BAC Information

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BAC

Clone NameB6Ng01-152J05
Chromosome10 (Build37)
Map Location 74,891,574 - 75,066,102
singlet/doubletdoublet
Overlap geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707
Downstream geneSusd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152J05.bB6Ng01-152J05.g
ACCDH948116DH948117
length1,158950
definitionDH948116|Mus musculus domesticus DNA, BAC clone: B6Ng01-152J05, 5' end.DH948117|Mus musculus domesticus DNA, BAC clone: B6Ng01-152J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,891,574 - 74,892,741)(75,065,157 - 75,066,102)
sequence
gaattctgggagagggggctgttctgattggtaaatgccaattcacaagt
ggcgggacgccaatggagagtgtttgaaggaggaaaaatgaactctacat
aatatcaggctactaaatctggatttgaacttgacttttcaagagtcaag
aatagtccagaatatactgcctctgatccttagctccccacccctcatcc
ttgctttgggggcttaggttgctctcgggcaggtcaacaaggtgagacac
catctacagggctacaaggaaaccaaagagctgctgtttctaagtagcag
ctggaggtggggtaggacagacacgctcctcacctgtttaccctggggtt
aatcattagctccctgctgatgtcacctgtctaggtacagcaggatctgc
tcagggtccactgtgtacacaccctggttgctgtctaactcagccagttt
tgaaattcacgagagaaagccgagagctctaggagccgatctgtttgcca
cccaccttgccctctaccctcccctcaagacccagaagtggtaccctcgg
gcatcaagcggggaacaagggatggatgaaaaaggtttccatttgcttgt
cctgcgagggatccgtaatccgaggcaggatgctcactctgctgcataga
gggtgtgagttctactctcaaatttattcttagacagtaggtcaagtccc
agaccaactcaagcaacattcagtttccaaaaaggagaagttgctctagg
tgcggctgggtctttttcacctctagcaatctgcacaaggatgtgtggtt
ggtaaggactcctcctaacatttgacctgaccactacctttcctcctgac
atgattgaacccttaccataggttatcctggaagtcatgtgatagaccac
aaagcagactgtggattaaatccttagccattgtgctttcccctgggtct
gctttgtattatgcctggggttttgtgtgtgccccaacccacgaactctg
gaacttaaaatagagtcccacccaaatgtaatttaggtcaccagcgatgc
ccccttctgctgagtctaagaaagcagaagtgtcccctccctccacccag
agcttcttttggaattttttcagtcccacattctcacagcgaggaaacct
ggccaccc
gaattccaggacagccaggacagagaaaccctgtctcggaacaaacaaac
aaacaaacccttcccaaaatttgaccatactccagtgagtacatttacaa
tacaaatttggcttgatttttttctttatttattcttttttgtggggagg
aggtgtgagaggacagtggggagcaggcatgggaggaccgggaagtttga
ttggggtgcatgctgtgaaattcccaatcaatcaataagaatattctgtt
ggtgggcgtggggggaagaacccttgccaaggccttacctgtgcccaatg
gcaggacgtttttacactggttcaacaggccttggtcatagctggctggc
actgtctcccgtgcattgatgatctctaccttgcctggagttgagatggg
gggagagatggccccaatttgttctaggtcttggtttccatctctctgct
aacccttggaacgctacctaccaccagggcttcacacaacagagactaag
gtagggtaaagggtcccaagagtacccgggaagaagcatgcaagaaacga
gtgccccatgacagacagaagccttttctccccagggcgcatcccgtgag
ggcccacctgtttgatgcatttgtagatgggtgaagacaacccctccgcc
cagacccatgctctgagggttaacaacaccagtacagaccagggcagcga
tggcggcatccacatgtgagccccgctgctggaggatggctctaaaggga
catgacatagaatcagagatctgtctttcctacttcatctcttcctgggc
ttatctgactggcactctctggtaacagcaactgattgattggtctttcc
ggttggtaccaatccccaagggaagttgaagaagacacacaggtgccccc
taatatccagctaccctattgtctgccatccacctggtagatattaaagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_74891574_74892741
seq2: B6Ng01-152J05.b_45_1202

seq1  GAATTCTGGGAGAGGGGGCTGTTCTGATTGGTAAATGCCAATTCACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAGGGGGCTGTTCTGATTGGTAAATGCCAATTCACAAGT  50

seq1  GGCGGGACGCCAATGGAGAGTGTTTGAAGGAGGAAAAATGAACTCTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGACGCCAATGGAGAGTGTTTGAAGGAGGAAAAATGAACTCTACAT  100

seq1  AATATCAGGCTACTAAATCTGGATTTGAACTTGACTTTTCAAGAGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGGCTACTAAATCTGGATTTGAACTTGACTTTTCAAGAGTCAAG  150

seq1  AATAGTCCAGAATATACTGCCTCTGATCCTTAGCTCCCCACCCCTCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCAGAATATACTGCCTCTGATCCTTAGCTCCCCACCCCTCATCC  200

seq1  TTGCTTTGGGGGCTTAGGTTGCTCTCGGGCAGGTCAACAAGGTGAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGGGGCTTAGGTTGCTCTCGGGCAGGTCAACAAGGTGAGACAC  250

seq1  CATCTACAGGGCTACAAGGAAACCAAAGAGCTGCTGTTTCTAAGTAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACAGGGCTACAAGGAAACCAAAGAGCTGCTGTTTCTAAGTAGCAG  300

seq1  CTGGAGGTGGGGTAGGACAGACACGCTCCTCACCTGTTTACCCTGGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTGGGGTAGGACAGACACGCTCCTCACCTGTTTACCCTGGGGTT  350

seq1  AATCATTAGCTCCCTGCTGATGTCACCTGTCTAGGTACAGCAGGATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAGCTCCCTGCTGATGTCACCTGTCTAGGTACAGCAGGATCTGC  400

seq1  TCAGGGTCCACTGTGTACACACCCTGGTTGCTGTCTAACTCAGCCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCACTGTGTACACACCCTGGTTGCTGTCTAACTCAGCCAGTTT  450

seq1  TGAAATTCACGAGAGAAAGCCGAGAGCTCTAGGAGCCGATCTGTTTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCACGAGAGAAAGCCGAGAGCTCTAGGAGCCGATCTGTTTGCCA  500

seq1  CCCACCTTGCCCTCTACCCTCCCCTCAAGACCCAGAAGTGGTACCCTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTGCCCTCTACCCTCCCCTCAAGACCCAGAAGTGGTACCCTCGG  550

seq1  GCATCAAGCGGGGAACAAGGGATGGATGAAAAAGGTTTCCATTTGCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAGCGGGGAACAAGGGATGGATGAAAAAGGTTTCCATTTGCTTGT  600

seq1  CCTGCGAGGGATCCGTAATCCGAGGCAGGATGCTCACTCTGCTGCATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGAGGGATCCGTAATCCGAGGCAGGATGCTCACTCTGCTGCATAGA  650

seq1  GGGTGTGAGTTCTACTCTCAAATTTATTCTTAGACAGTAGGTCAAGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGTTCTACTCTCAAATTTATTCTTAGACAGTAGGTCAAGTCCC  700

seq1  AGACCAACTCAAGCAACATTCAGTTTCCAAAAAGGAGAAGTTGCTCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACTCAAGCAACATTCAGTTTCCAAAAAGGAGAAGTTGCTCTAGG  750

seq1  TGCGGCTGGGTCTTTTTCACCTCTAGCAATCTGCACAAGGATGTGTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTGGGTCTTTTTCACCTCTAGCAATCTGCACAAGGATGTGTGGTT  800

seq1  GGTAAGGACTCCTCCTAACA-TTGACCTGACCACAACCTTTCCTCCTGAC  849
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GGTAAGGACTCCTCCTAACATTTGACCTGACCACTACCTTTCCTCCTGAC  850

seq1  ATGATTGAACCCTTACCATAGGTTATCCTGGAAGTCATGTGATAGACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAACCCTTACCATAGGTTATCCTGGAAGTCATGTGATAGACCAC  900

seq1  AAAGCAGACTGTGGATTAAATCCTTAGGCCATTGTGCTTTTCCCTTGGGT  949
      |||||||||||||||||||||||||| |||||||||| |||||| |||||
seq2  AAAGCAGACTGTGGATTAAATCCTTA-GCCATTGTGC-TTTCCCCTGGGT  948

seq1  CTGCTTTGTTATTATGCCTGGGGTTTTGTGTTGTGCCCCAACACACCGAA  999
      |||||||| ||||||||||||||||||||| ||||||||||| |||   |
seq2  CTGCTTTG-TATTATGCCTGGGGTTTTGTG-TGTGCCCCAACCCAC--GA  994

seq1  ACTCTGGAACTTAAAATAGAGTCACACCCAAATGTTAATTTTAGGTCACC  1049
      ||||||||||||||||||||||| |||||||||||  | |||||||||||
seq2  ACTCTGGAACTTAAAATAGAGTCCCACCCAAATGT--AATTTAGGTCACC  1042

seq1  AGCGATGCTCACTTCTGCTGAGTCTAAGGAAAGCAGAAGTGTTTCCACTC  1099
      |||||||| | |||||||||||||||| |||||||||||||  ||| |||
seq2  AGCGATGCCCCCTTCTGCTGAGTCTAA-GAAAGCAGAAGTG--TCCCCTC  1089

seq1  CAACAA--CAGAGC-TCTTTTGTAATTTTTTTTTCAGT-CCACTTACT-A  1144
      |  | |  |||||| ||||||| ||   |||||||||| |||| | || |
seq2  CCTCCACCCAGAGCTTCTTTTGGAA---TTTTTTCAGTCCCACATTCTCA  1136

seq1  CATGGAGGGAAACCTGGGCCACCC  1168
      ||  || |||||||| ||||||||
seq2  CAGCGA-GGAAACCT-GGCCACCC  1158

seq1: chr10_75065157_75066102
seq2: B6Ng01-152J05.g_68_1017 (reverse)

seq1  GCTTTATAATCTACCGGTTGTGATGGCAGACCAATGGGTAGCTGGATTTG  50
      ||||||  ||||||| | || |||||||||| |  |||||||||||| | 
seq2  GCTTTAATATCTACCAGGTG-GATGGCAGACAATAGGGTAGCTGGATATT  49

seq1  AGGGGGCAGCTTGGTGTGTCTTCT--CACCTCCCTTGGGGTTTGGTGCCA  98
      |||||||| ||  |||||||||||   || |||||||||| ||||| |||
seq2  AGGGGGCACCT--GTGTGTCTTCTTCAACTTCCCTTGGGGATTGGTACCA  97

seq1  GCC-GACAGACC-ATCAATCTGTTGCTGTTTCCCAGCGAGTGCCAGTCAG  146
       || || ||||| ||||||| ||||||| || |||| |||||||||||||
seq2  ACCGGAAAGACCAATCAATCAGTTGCTG-TTACCAGAGAGTGCCAGTCAG  146

seq1  TTGAGCCCAGGAAGAGATGAAGTAGGGAAGACAGATCTCTGATTCTGTGT  196
       | ||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  ATAAGCCCAGGAAGAGATGAAGTAGGAAAGACAGATCTCTGATTCTATGT  196

seq1  CATGTCCC-TTAGAGCCATCCTCCAGCAGCGGGGCTCACCTGTGGATGCC  245
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CATGTCCCTTTAGAGCCATCCTCCAGCAGCGGGGCTCACATGTGGATGCC  246

seq1  GCCATCGCTGCCCTGGTCTGTACTGGTGTTGTTAACCCTCAGAGCATGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGCTGCCCTGGTCTGTACTGGTGTTGTTAACCCTCAGAGCATGGG  296

seq1  TCTGGGCGGAGGGGTTGTCTTCA-CCATCTAC-AATGCATC-AACAGGTG  342
      ||||||||||||||||||||||| |||||||| |||||||| ||||||||
seq2  TCTGGGCGGAGGGGTTGTCTTCACCCATCTACAAATGCATCAAACAGGTG  346

seq1  GGCCCTCACGGGATGCGCCCTGGGGAGAAAAGGCTTCTGTCTGTCATGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCACGGGATGCGCCCTGGGGAGAAAAGGCTTCTGTCTGTCATGGG  396

seq1  GCACTCGTTTCTTGCATGCTTCTTCCCGGGTACTCTTGGGACCCTTTACC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGTTTCTTGCATGCTTCTTCCCGGGTACTCTTGGGACCCTTTACC  446

seq1  CTACCTTAGTCTCTGTTGTGTGAAGCCCTGGTGGTAGGTAGCGTTCCAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTAGTCTCTGTTGTGTGAAGCCCTGGTGGTAGGTAGCGTTCCAAG  496

seq1  GGTTAGCAGAGAGATGGAAACCAAGACCTAGAACAAATTGGGGCCATCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAGAGAGATGGAAACCAAGACCTAGAACAAATTGGGGCCATCTC  546

seq1  TCCCCCCATCTCAACTCCAGGCAAGGTAGAGATCATCAATGCACGGGAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCATCTCAACTCCAGGCAAGGTAGAGATCATCAATGCACGGGAGA  596

seq1  CAGTGCCAGCCAGCTATGACCAAGGCCTGTTGAACCAGTGTAAAAACGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAGCCAGCTATGACCAAGGCCTGTTGAACCAGTGTAAAAACGTC  646

seq1  CTGCCATTGGGCACAGGTAAGGCCTTGGCAAGGGTTCTTCCCCCCACGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTGGGCACAGGTAAGGCCTTGGCAAGGGTTCTTCCCCCCACGCC  696

seq1  CACCAACAGAATATTCTTATTGATTGATTGGGAATTTCACAGCATGCACC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAGAATATTCTTATTGATTGATTGGGAATTTCACAGCATGCACC  746

seq1  CCAATCAAACTTCCCGGTCCTCCCATGCCTGCTCCCCACTGTCCTCTCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAACTTCCCGGTCCTCCCATGCCTGCTCCCCACTGTCCTCTCAC  796

seq1  ACCTCCTCCCCACAAAAAAGAATAAATAAAGAAAAAAATCAAGCCAAATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCCCCACAAAAAAGAATAAATAAAGAAAAAAATCAAGCCAAATT  846

seq1  TGTATTGTAAATGTACTCACTGGAGTATGGTCAAATTTTGGGAAGGGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTAAATGTACTCACTGGAGTATGGTCAAATTTTGGGAAGGGTTT  896

seq1  GTTTGTTTGTTTGTTCCGAGACAGGGTTTCTCTGTCCTGGCTGTCCTGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTCCGAGACAGGGTTTCTCTGTCCTGGCTGTCCTGGA  946

seq1  ATTC  946
      ||||
seq2  ATTC  950