BAC Information

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BAC

Clone NameB6Ng01-153D04
Chromosome10 (Build37)
Map Location 17,606,578 - 17,768,706
singlet/doubletdoublet
Overlap geneHeca, 3110003A17Rik
Upstream geneLOC100039576, LOC627511, Cited2, Txlnb, LOC665321
Downstream geneReps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D04.bB6Ng01-153D04.g
ACCDH948578DH948579
length1,163776
definitionDH948578|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D04, 5' end.DH948579|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,767,537 - 17,768,706)(17,606,578 - 17,607,365)
sequence
gaattccccagaaattgcccttaggagaagggagttgcctcacttacaag
tccaaggacagctgacacaagaactattcggagggcttaggagcctaacg
ttccctgaatagctttgggacattgggcttgatcaatcagttgattgtta
cagagtgtctctacctagctctggttgaactagacattgctatatagatc
aagctgacctcaaactcaccaagatctgcctgtgtctgcctcctaggtgc
tgggattcaaggtgtgtgccaccaggccatcttgtttagcaattttgaag
tgccacctcagctccagagatctcagggttgctggagacgtctgccactt
ctgcctcacagttttccctctgtccagttctgtgctttcttccttgttgc
tgttgttcctaacaatcaaggaacttcccatttccaagatcgctgtctca
agatttgtttcccaggaacctgacctaagttagtgacacacttctgcatt
cacttactgagttcctgctcgcaaccccttagacttattactgtaattat
tattacagcattgcaggactgaatattacataaacaaattatttcatcta
gctccactggagaagctgagctgctgctgcatcagactgatgctgggcta
taggtttgaaagccaagcaacagagctgcatccagctgctcagatgaaaa
gggcagagtcaggtcaggacagtgatagatgaaggatgaaatgtccagaa
gggtaaacaagacaggcaggtagactgtatcaacaagcagacactgagct
aaagtccccggggctgtcagatcctcggacccttgacacacactccagat
ggtttagaaaacaggctggcggggccatcacaatgatggtgagataggag
agcagttacggacaggccccagcaagagcaatagctgtctgtaacactca
cgattgtcagctgatgcgccacagatcaaagggcttctgctcgatgactt
tagataactgcgtgagtctctgagagagcttttcaaggagcaaagaaagt
accctttcaccacctatggtcctcctggactgagccattgatgatttttg
taaggtatattttggggggggggacgtctatccgatgggtttggggtgac
cctattccggaga
gaattccacttatttaaagacttctgatttcttttctttgatgcttaata
gtaagtcctgaaatcttcagatttatttttgttaattaaaaaattgtatg
taacccaaaacttagtgctaaagtacttgctccaacttcaaaattgaggc
aatgcaaaaaaaaaaaagtcaatttgagtattttaaacattattcttttt
aaataaaaagattcactttttaatttgaatgctaagcaattttgaatgag
ctttcttgtacagctcaggatgacttgctaatgatatttacttaaaattt
ttaaccaatttccatctatttgcctgtgaatttcatgaagttgttgtttt
taatagctgagtagtattccattgtgtaaatataccacattttctgtatc
cattcctctgttgagggacatctgggttgtttccagcttctggctattat
tattatgggctgctatgaacatagtggagcatgtgtccttattacatgtt
ggagcatcttctgggtatatgcccaggagtggtatagctgggtccaattt
tctgatgaatcacaagccagatttccagagtggttgtacaagcttgcaat
cccaccaataatgaggagttttctctttctccacatccttgcagcatctg
ctgtcacttgagttttgatcttagccattctcctgtgtgaggtggaatct
aaggctgttttgattgcatttccctgaagactaagatgttggtcatttct
tacgtgcttccagcatatgagtttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17767537_17768706
seq2: B6Ng01-153D04.b_43_1205 (reverse)

seq1  TCTCAGGAATAGGGTCACCCAACACACACTGTGATATGACTGTCCCCCCC  50
      |||| ||||||||||||||| | || || |  |||| |||   |||||||
seq2  TCTCCGGAATAGGGTCACCCCAAACCCA-TCGGATA-GACGTCCCCCCCC  48

seq1  CAAAAATATACTTTAAAAATAATACAACAAATGGCTACAGTACAGAGAGA  100
      | ||||||||| ||| ||| ||| || | ||||||| |||| ||| ||| 
seq2  CCAAAATATACCTTACAAA-AAT-CATC-AATGGCT-CAGTCCAG-GAGG  93

seq1  ACAATA-GTGGTGAAAGGGTAACTTCTTTGCTCCTGAGAAAGCTCTCTCA  149
      || ||| ||||||||||||||  ||||||||||||   ||||||||||||
seq2  ACCATAGGTGGTGAAAGGGTACTTTCTTTGCTCCTTGAAAAGCTCTCTCA  143

seq1  GAGACTCACGCAGTTATCTAAAGGTCATCGAGCAGAAGGCCTTTGATCTG  199
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GAGACTCACGCAGTTATCTAAA-GTCATCGAGCAGAAGCCCTTTGATCTG  192

seq1  TGGCGCATCAGCTGAC-ATCGTGAGTGTTTACAGACAGCTATTGCTCTTG  248
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  TGGCGCATCAGCTGACAATCGTGAGTG-TTACAGACAGCTATTGCTCTTG  241

seq1  CTGGGGCCTGTCCTTAACTGCTTCTCCTATCTCACCATCATTGTGATGGC  298
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CTGGGGCCTGTCCGTAACTGC-TCTCCTATCTCACCATCATTGTGATGGC  290

seq1  CCCGCCAGCCTGTTTTCTAAACCATCTGGAGTGTGTGTCAAGGGTCCGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAGCCTGTTTTCTAAACCATCTGGAGTGTGTGTCAAGGGTCCGAG  340

seq1  GATCTGACAGCCCCGGGGACTTTAGCTCAGTGTCTGCTTGTTGATACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACAGCCCCGGGGACTTTAGCTCAGTGTCTGCTTGTTGATACAGT  390

seq1  CTACCTGCCTGTCTTGTTTACCCTTCTGGACATTTCATCCTTCATCTATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCCTGTCTTGTTTACCCTTCTGGACATTTCATCCTTCATCTATC  440

seq1  ACTGTCCTGACCTGACTCTGCCC-TTTCATCTGAGCAGCTGGATGCAGCT  497
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGTCCTGACCTGACTCTGCCCTTTTCATCTGAGCAGCTGGATGCAGCT  490

seq1  CTGTTGCTTGGCTTTCAAACCTATAGCCCAGCATCAGTCTGATGCAGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTTGGCTTTCAAACCTATAGCCCAGCATCAGTCTGATGCAGCAG  540

seq1  CAGCTCAGCTTCTCCAGTGGAGCTAGATGAAATAATTTGTTTATGTAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCTTCTCCAGTGGAGCTAGATGAAATAATTTGTTTATGTAATA  590

seq1  TTCAGTCCTGCAATGCTGTAATAATAATTACAGTAATAAGTCTAAGGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCTGCAATGCTGTAATAATAATTACAGTAATAAGTCTAAGGGGT  640

seq1  TGCGAGCAGGAACTCAGTAAGTGAATGCAGAAGTGTGTCACTAACTTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCAGGAACTCAGTAAGTGAATGCAGAAGTGTGTCACTAACTTAGG  690

seq1  TCAGGTTCCTGGGAAACAAATCTTGAGACAGCGATCTTGGAAATGGGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCCTGGGAAACAAATCTTGAGACAGCGATCTTGGAAATGGGAAG  740

seq1  TTCCTTGATTGTTAGGAACAACAGCAACAAGGAAGAAAGCACAGAACTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGATTGTTAGGAACAACAGCAACAAGGAAGAAAGCACAGAACTGG  790

seq1  ACAGAGGGAAAACTGTGAGGCAGAAGTGGCAGACGTCTCCAGCAACCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGAAAACTGTGAGGCAGAAGTGGCAGACGTCTCCAGCAACCCTG  840

seq1  AGATCTCTGGAGCTGAGGTGGCACTTCAAAATTGCTAAACAAGATGGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGGAGCTGAGGTGGCACTTCAAAATTGCTAAACAAGATGGCCT  890

seq1  GGTGGCACACACCTTGAATCCCAGCACCTAGGAGGCAGACACAGGCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACACACCTTGAATCCCAGCACCTAGGAGGCAGACACAGGCAGAT  940

seq1  CTTGGTGAGTTTGAGGTCAGCTTGATCTATATAGCAATGTCTAGTTCAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGAGTTTGAGGTCAGCTTGATCTATATAGCAATGTCTAGTTCAAC  990

seq1  CAGAGCTAGGTAGAGACACTCTGTAACAATCAACTGATTGATCAAGCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGGTAGAGACACTCTGTAACAATCAACTGATTGATCAAGCCCA  1040

seq1  ATGTCCCAAAGCTATTCAGGGAACGTTAGGCTCCTAAGCCCTCCGAATAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAAAGCTATTCAGGGAACGTTAGGCTCCTAAGCCCTCCGAATAG  1090

seq1  TTCTTGTGTCAGCTGTCCTTGGACTTGTAAGTGAGGCAACTCCCTTCTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTCAGCTGTCCTTGGACTTGTAAGTGAGGCAACTCCCTTCTCC  1140

seq1  TAAGGGCAATTTCTGGGGAATTC  1170
      |||||||||||||||||||||||
seq2  TAAGGGCAATTTCTGGGGAATTC  1163

seq1: chr10_17606578_17607365
seq2: B6Ng01-153D04.g_70_845

seq1  GAATTCCACTTATTTAAAGACTTCTGATTTCTTTTCTTTGATGCTTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTATTTAAAGACTTCTGATTTCTTTTCTTTGATGCTTAATA  50

seq1  GTAAGTCCTGAAATCTTCAGATTTATTTTTGTTAATTAAAAAATTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCTGAAATCTTCAGATTTATTTTTGTTAATTAAAAAATTGTATG  100

seq1  TAACCCAAAACTTAGTGCTAAAGTACTTGCTCCAACTTCAAAATTGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAAAACTTAGTGCTAAAGTACTTGCTCCAACTTCAAAATTGAGGC  150

seq1  AATGCAAAAAAAAAAAAGTCAATTTGAGTATTTTAAACATTATTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAAAAAAAAAGTCAATTTGAGTATTTTAAACATTATTCTTTTT  200

seq1  AAATAAAAAGATTCACTTTTTAATTTGAATGCTAAGCAATTTTGAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGATTCACTTTTTAATTTGAATGCTAAGCAATTTTGAATGAG  250

seq1  CTTTCTTGTACAGCTCAGGATGACTTGCTAATGATATTTACTTAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTACAGCTCAGGATGACTTGCTAATGATATTTACTTAAAATTT  300

seq1  TTAACCAATTTCCATCTATTTGCCTGTGAATTTCATGAAGTTGTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAATTTCCATCTATTTGCCTGTGAATTTCATGAAGTTGTTGTTTT  350

seq1  TAATAGCTGAGTAGTATTCCATTGTGTAAATATACCACATTTTCTGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTGAGTAGTATTCCATTGTGTAAATATACCACATTTTCTGTATC  400

seq1  CATTCCTCTGTTGAGGGACATCTGGGTTGTTTCCAGCTTCTGGCTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTGTTGAGGGACATCTGGGTTGTTTCCAGCTTCTGGCTATTAT  450

seq1  TATTATGGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACATGTT  500

seq1  GGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATAGCTGGGTCCAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATAGCTGGGTCCAATTT  550

seq1  TCTGATGAATCACAAGCCAGATTTCCAGAGTGGTTGTACAAGCTTGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAATCACAAGCCAGATTTCCAGAGTGGTTGTACAAGCTTGCAAT  600

seq1  CCCACCAATAATGGAGGAGTTTTCCTCTTTCTCCACATCCTTGCCAGCAT  650
      |||||||||||| |||||||||| ||||||||||||||||||| ||||||
seq2  CCCACCAATAAT-GAGGAGTTTT-CTCTTTCTCCACATCCTTG-CAGCAT  647

seq1  CTGCTGTCACTTGAGTTTTTGATCTTAGCCATTCTTCCTGGTGTGAGGTG  700
      ||||||||||||||| |||||||||||||||||| |||| ||||||||||
seq2  CTGCTGTCACTTGAG-TTTTGATCTTAGCCATTC-TCCT-GTGTGAGGTG  694

seq1  GAATCTCAGGGCTGTTTTGATTTGCATTTCCCTGATGACTAAGGATGTTG  750
      |||||| | ||||||||||| |||||||||||||| |||||| |||||||
seq2  GAATCT-AAGGCTGTTTTGA-TTGCATTTCCCTGAAGACTAA-GATGTTG  741

seq1  TACATTTCTTTACGTGCTTTTCAGCCATTTGAGTTTCC  788
        |||||| |||||||| || ||| ||| |||||||||
seq2  GTCATTTC-TTACGTGC-TTCCAG-CATATGAGTTTCC  776