BAC Information

Click to search

BAC

Clone NameB6Ng01-154E16
Chromosome10 (Build37)
Map Location 60,018,339 - 60,191,154
singlet/doubletdoublet
Overlap geneCdh23, Slc29a3
Upstream geneLOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, 4632428N05Rik
Downstream geneUnc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E16.bB6Ng01-154E16.g
ACCDH949376DH949377
length158901
definitionDH949376|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E16, 5' end.DH949377|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,018,339 - 60,018,496)(60,190,257 - 60,191,154)
sequence
attaccatcggtgttattacaagaaatgacaaataaatctgtaacagtgg
gacccttcaaataataatcacgaatcattaggtctgtgctccgctcgctt
ccttgatactggcttgcagatatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg
gaattcctgtcgtctttaggtgatccatactgccacctgtcagggggtaa
catatacctactaccccttcactgcaccaccctgtatgtacggcgactta
ggaggttggaatgacatcctatttttcctggtcatagatgtgccatagtg
gagccacattcctgatcttttcccttggtggccatggaaccagaagctgg
cccagttctggggtcatccggttcagggaaaagaccctcttgggaccttg
gagtgtatgacctccagtcacagcagacagtggccaatcagtggccttgc
ataaaggaaaacagctcactcactcaggtgcctatgcaggtcacttggct
actgaagccaaagggcacgatttattcctagagggatctcctcagactgt
ctgcactcgaaacctgggctacctctgggtgcttagctaccgactttgta
gccccctgggccaggctccaggctgctaggcatggggagggtggttagaa
gggggctgggcagggaagtagtttcacaggtttcctagtagactatgggc
tgtaggcaatatttgagggccttagggaaacggttctccagcctcgctgg
ttgccagctgccaaggacagtttagggcgaagctgttttttatttaatgt
ggaagattgaaaagtctccttccttccctccctcctggagcaccctggct
tctctcactggctcattcataatcgccaaattgttttattatgttaaatc
tgcagcttttataaatacagatgagccagatttacatttccagagtcttg
gggaagaaatcagtctcctggggttctggactctctgtgggcaagggaga
ggattgtggatggtccgagccctcctccgcatcatctggccaagtggcct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_60018339_60018496
seq2: B6Ng01-154E16.b_52_209

seq1  ATTACCATCGGTGTTATTACAAGAAATGACAAATAAATCTGTAACAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATCGGTGTTATTACAAGAAATGACAAATAAATCTGTAACAGTGG  50

seq1  GACCCTTCAAATAATAATCACGAATCATTAGGTCTGTGCTCCGCTCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCAAATAATAATCACGAATCATTAGGTCTGTGCTCCGCTCGCTT  100

seq1  CCTTGATACTGGCTTGCAGATATGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATACTGGCTTGCAGATATGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTG  158
      ||||||||
seq2  TGTGTGTG  158

seq1: chr10_60190257_60191154
seq2: B6Ng01-154E16.g_67_967 (reverse)

seq1  GAGGCCACATGGCCCTGATGATGCTGGAGGAGGGCTCGGGCCATCCACAC  50
      |||||||| ||| || |||||||| |||||||||||||| ||||||||| 
seq2  GAGGCCACTTGG-CCAGATGATGC-GGAGGAGGGCTCGGACCATCCACAA  48

seq1  TCCTCTCCCTTG-CCACTGAGAGTCCAGGACCCCAGGGGACTGATTTCTT  99
      |||||||||||| |||| |||||||||| |||||||| ||||||||||||
seq2  TCCTCTCCCTTGCCCACAGAGAGTCCAGAACCCCAGGAGACTGATTTCTT  98

seq1  -CCCAAGACTCTGG-AATGTAAATCTGGCTCATCTGTATTTAT-AAAGCT  146
       ||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  CCCCAAGACTCTGGAAATGTAAATCTGGCTCATCTGTATTTATAAAAGCT  148

seq1  GCAGATTTAACATAATAAAAC-ACTTGGCGATTATGAATGAGCCAGTGAG  195
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  GCAGATTTAACATAATAAAACAATTTGGCGATTATGAATGAGCCAGTGAG  198

seq1  AGAAGCCAGGGTGCTCCAGGAGGGAGGGAAGGAAGGAGACTTTTCAATCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAGGGTGCTCCAGGAGGGAGGGAAGGAAGGAGACTTTTCAATCT  248

seq1  TCCACATTAAATAAAAAACAGCTTCGCCCTAAACTGTCCTTGGCAGCTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTAAATAAAAAACAGCTTCGCCCTAAACTGTCCTTGGCAGCTGG  298

seq1  CAACCAGCGAGGCTGGAGAACCGTTTCCCTAAGGCCCTCAAATATTGCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCGAGGCTGGAGAACCGTTTCCCTAAGGCCCTCAAATATTGCCT  348

seq1  ACAGCCCATAGTCTACTAGGAAACCTGTGAAACTACTTCCCTGCCCAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCATAGTCTACTAGGAAACCTGTGAAACTACTTCCCTGCCCAGCC  398

seq1  CCCTTCTAACCACCCTCCCCATGCCTAGCAGCCTGGAGCCTGGCCCAGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTAACCACCCTCCCCATGCCTAGCAGCCTGGAGCCTGGCCCAGGG  448

seq1  GGCTACAAAGTCGGTAGCTAAGCACCCAGAGGTAGCCCAGGTTTCGAGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAAAGTCGGTAGCTAAGCACCCAGAGGTAGCCCAGGTTTCGAGTG  498

seq1  CAGACAGTCTGAGGAGATCCCTCTAGGAATAAATCGTGCCCTTTGGCTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCTGAGGAGATCCCTCTAGGAATAAATCGTGCCCTTTGGCTTC  548

seq1  AGTAGCCAAGTGACCTGCATAGGCACCTGAGTGAGTGAGCTGTTTTCCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCAAGTGACCTGCATAGGCACCTGAGTGAGTGAGCTGTTTTCCTT  598

seq1  TATGCAAGGCCACTGATTGGCCACTGTCTGCTGTGACTGGAGGTCATACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGGCCACTGATTGGCCACTGTCTGCTGTGACTGGAGGTCATACA  648

seq1  CTCCAAGGTCCCAAGAGGGTCTTTTCCCTGAACCGGATGACCCCAGAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGTCCCAAGAGGGTCTTTTCCCTGAACCGGATGACCCCAGAACT  698

seq1  GGGCCAGCTTCTGGTTCCATGGCCACCAAGGGAAAAGATCAGGAATGTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCTTCTGGTTCCATGGCCACCAAGGGAAAAGATCAGGAATGTGG  748

seq1  CTCCACTATGGCACATCTATGACCAGGAAAAATAGGATGTCATTCCAACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTATGGCACATCTATGACCAGGAAAAATAGGATGTCATTCCAACC  798

seq1  TCCTAAGTCGCCGTACATACAGGGTGGTGCAGTGAAGGGGTAGTAGGTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTCGCCGTACATACAGGGTGGTGCAGTGAAGGGGTAGTAGGTAT  848

seq1  ATGTTACCCCCTGACAGGTGGCAGTATGGATCACCTAAAGACGACAGGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCCCCTGACAGGTGGCAGTATGGATCACCTAAAGACGACAGGAA  898

seq1  TTC  898
      |||
seq2  TTC  901