BAC Information

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BAC

Clone NameB6Ng01-154F08
Chromosome10 (Build37)
Map Location 49,779,561 - 49,892,699
singlet/doubletdoublet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F08.bB6Ng01-154F08.g
ACCDH949406DH949407
length9521,131
definitionDH949406|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F08, 5' end.DH949407|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,779,561 - 49,780,325)(49,891,553 - 49,892,699)
sequence
gaattctacaaaaatttcaaaaataagccctgaaatataagtgacttgga
acatggagctaaaacaggaaatttatagtacaaaatgaatatatcagaat
agaggaaaagcataatgaaaaatttcatgaatatcaataggataaggtga
tattatgtatagcttcatgccaataaagttgaatattttgaagaaacaaa
taaagtcacataaatacgtgaaatagaaatattctctgacaagaagtaat
tttggctgacttaacagactttttttatttgatattttctttatatacat
ttcaaatattatctcctttcctggtttcccctctaaaagtcccctatccc
attcctcctccccctgctcaccaacccacccacttctgcttccctgcctt
ggcattcccctatactggggcatcgagccttcatatgaccaaaggcctct
cctcccactgatgtccaacaaggccatcctctgctacatatgcagctgga
gccataggtctcttcatgtgtactatttggttggtagtttagttcctggg
agctctgggggtactggttgattcataatgttgttcctcctatgaggctg
caaacctcttctgctccttgggtcctttctctagttcctccattagagac
ctttgctcagtccaatggttggctgagagcatccacctctgtatttgtca
ggcactggcagagcttctcaggagacagctatatcaggctcctgtcagca
aagcactggttggcatccacaatagtgtctgggttgggtgactctatatg
tgatgggatccccaagtgggtaagtcagtcgcttgatggtttctctttca
gtctctgctccacactttgtctctgtatctgctcccatgggtattttgtt
cccccttctaaaaggactgaagtattcacagtttgatcttcctctttttg
aa
gaattcaaatggctaattagaaggccaccattattattagaaatttagtt
ttaattaatgcttagtgaacttctttgaatggtttgttgttttctgattt
ctgggatatatgaatgttcacacttccatatttgtttagatgcctcataa
atatttaaatcataagtagtgattgatcactgttttttagttatcagcaa
atcataagctctaatttctaatcattttataccctcaaattataaaaaat
attttgcatctaaacaaataaatacatcccgcatttatgaaattaccaga
gccccaaatccaagaagttataaagataaaaaaacccatcaggtccagac
ctctcaaagctaatgccagtgaccttcctgactcttcaggataggcaagg
ctgaggaaacaaagctgtgatgcgtcctggtgggggaatctgaatgtggg
ttctagaaacttcttgctttctcttatgtccacataaaacttgttccaat
caaacaaagaataatatctagaatatgaaaataactattaaaggcaataa
taagaacaaccaatttatttcaagtgtgataatgtatttgaatatatgtt
tcacaaagagatattgatgacaaataagattgtacaattaatttattttt
aatttattattaatgtactgcaaatttatacttagattctactatatgat
cactagaatggttaagatgcaaacaagaaatgtggcaatagtaagtgtta
tcaaaaatagaagagttgagatatttttctgtttgcgtgctgtatattga
gtaaaagcacacaacataactgtgagttacaactttatccctgcagtttg
aactccagtacactgctgatcagagattcaaaataccgcaaacaccgtga
aaaacactaggacattgattgtgagtgaatggatgcttactatatcccac
cattccaaatttaaagaattcattcagagaagcatatatatagctatatg
tctttttttttgtatagtcaaactgggataactcaatgttcttcagctgg
ggggatggatgttccactaaaggtctatcgtaatggaaacagtttcagac
aacctggaatgactatagaagcatgttgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49779561_49780325
seq2: B6Ng01-154F08.b_44_810

seq1  GAATTCTACAAAAATTTCAAAAATAAG-AATGAAATATAAGTGACTTGGA  49
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  GAATTCTACAAAAATTTCAAAAATAAGCCCTGAAATATAAGTGACTTGGA  50

seq1  ACATGGAGCTAAAACAGGAAATTTATAGTACAAAATGAATATATCAGAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGCTAAAACAGGAAATTTATAGTACAAAATGAATATATCAGAAT  100

seq1  AGAGGAAAAGCATAATGAAAAATTTCATGAATATCAATAGGATAAGGTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAAGCATAATGAAAAATTTCATGAATATCAATAGGATAAGGTGA  150

seq1  TATTATGTATAGCTTCATGCCAATAAAGTTGAATATTTTGAAGAAACAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTATAGCTTCATGCCAATAAAGTTGAATATTTTGAAGAAACAAA  200

seq1  TAAAGTCACATAAATACGTGAAATAGAAATATTCTCTGACAAGAAGTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCACATAAATACGTGAAATAGAAATATTCTCTGACAAGAAGTAAT  250

seq1  TTTGGCTGACTTAACAGACTTTTTTTATTTGATATTTTCTTTATATACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGACTTAACAGACTTTTTTTATTTGATATTTTCTTTATATACAT  300

seq1  TTCAAATATTATCTCCTTTCCTGGTTTCCCCTCTAAAAGTCCCCTATCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATTATCTCCTTTCCTGGTTTCCCCTCTAAAAGTCCCCTATCCC  350

seq1  ATTCCTCCTCCCCCTGCTCACCAACCCACCCACTTCTGCTTCCCTGCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCTCCCCCTGCTCACCAACCCACCCACTTCTGCTTCCCTGCCTT  400

seq1  GGCATTCCCCTATACTGGGGCATCGAGCCTTCATATGACCAAAGGCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCCCTATACTGGGGCATCGAGCCTTCATATGACCAAAGGCCTCT  450

seq1  CCTCCCACTGATGTCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTGATGTCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGA  500

seq1  GCCATAGGTCTCTTCATGTGTACTATTTGGTTGGTAGTTTAGTTCCTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGTCTCTTCATGTGTACTATTTGGTTGGTAGTTTAGTTCCTGGG  550

seq1  AGCTCTGGGGGTACTGGTTGATTCATAATGTTGTTCCTCCTATGAGGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGGGTACTGGTTGATTCATAATGTTGTTCCTCCTATGAGGCTG  600

seq1  CAAACCTCTTCTGCTCCTTGGGTCCTTTCTCTAGTTCCTCCATTAGAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCTTCTGCTCCTTGGGTCCTTTCTCTAGTTCCTCCATTAGAGAC  650

seq1  CTTTGCTCAGTCCAATGGTTGGCTGAGAGCATCCACCTCTGTATTTGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCAGTCCAATGGTTGGCTGAGAGCATCCACCTCTGTATTTGTCA  700

seq1  GGCACTGGCAGAGCTTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGC-  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCACTGGCAGAGCTTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCA  750

seq1  AAGCACTGGTTGGCATC  765
      |||||||||||||||||
seq2  AAGCACTGGTTGGCATC  767

seq1: chr10_49891553_49892699
seq2: B6Ng01-154F08.g_67_1197 (reverse)

seq1  TCGCTACATGCTTCTATAGTCCATTTCCCAGTTTGTCTGAGAACTGTTTC  50
      |||| ||||||||||||||| ||||  |||| |||||||| |||||||||
seq2  TCGCAACATGCTTCTATAGT-CATT--CCAGGTTGTCTGA-AACTGTTTC  46

seq1  ATTTTACGGATAGA-CTGTAGTTTGGACATCCAT-CCCCCAGCTGAAGAA  98
         |||| |||||| || ||| | | |||||||| |||||||||||||||
seq2  -CATTAC-GATAGACCTTTAG-TGGAACATCCATCCCCCCAGCTGAAGAA  93

seq1  CATTTGAGTTATCCCAGTTTTGACTAT-TACAAAAAAAGACATTATAGCT  147
      || |||||||||||||| |||||||||  | ||||||||||| |||||||
seq2  CA-TTGAGTTATCCCAG-TTTGACTATACAAAAAAAAAGACA-TATAGCT  140

seq1  ATTATTATATGCTTTCTCTTGAATGAATTCTTTAAAATTTGGAATGGTGG  197
      ||   ||||||| ||||| |||||||||||||| ||||||||||||||||
seq2  AT--ATATATGC-TTCTC-TGAATGAATTCTTT-AAATTTGGAATGGTGG  185

seq1  GAATATAGTAAGCATCCATTCCACCTCACAATCAATGTCCTAGTGTTTTT  247
      | |||||||||||||||||||   ||||||||||||||||||||| ||||
seq2  G-ATATAGTAAGCATCCATTC--ACTCACAATCAATGTCCTAGTG-TTTT  231

seq1  TCACGGTGTTTGCGGTATTTTGAATCTCTGATCAGCAGTGTACTGGAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTGTTTGCGGTATTTTGAATCTCTGATCAGCAGTGTACTGGAGTT  281

seq1  CAAACTGCAGGGATAAAGTTGTAACTCACAGTTATGTTGTGTGCTTTTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCAGGGATAAAGTTGTAACTCACAGTTATGTTGTGTGCTTTTAC  331

seq1  TCAATATACAGCACGCAAACAGAAAAATATCTCAACTCTTCTATTTTTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATACAGCACGCAAACAGAAAAATATCTCAACTCTTCTATTTTTGA  381

seq1  TAACACTTACTATTGCCACATTTCTTGTTTGCATCTTAACCATTCTAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTACTATTGCCACATTTCTTGTTTGCATCTTAACCATTCTAGTG  431

seq1  ATCATATAGTAGAATCTAAGTATAAATTTGCAGTACATTAATAATAAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATAGTAGAATCTAAGTATAAATTTGCAGTACATTAATAATAAATT  481

seq1  AAAAATAAATTAATTGTACAATCTTATTTGTCATCAATATCTCTTTGTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATTAATTGTACAATCTTATTTGTCATCAATATCTCTTTGTGA  531

seq1  AACATATATTCAAATACATTATCACACTTGAAATAAATTGGTTGTTCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATTCAAATACATTATCACACTTGAAATAAATTGGTTGTTCTTA  581

seq1  TTATTGCCTTTAATAGTTATTTTCATATTCTAGATATTATTCTTTGTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCTTTAATAGTTATTTTCATATTCTAGATATTATTCTTTGTTTG  631

seq1  ATTGGAACAAGTTTTATGTGGACATAAGAGAAAGCAAGAAGTTTCTAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACAAGTTTTATGTGGACATAAGAGAAAGCAAGAAGTTTCTAGAA  681

seq1  CCCACATTCAGATTCCCCCACCAGGACGCATCACAGCTTTGTTTCCTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTCAGATTCCCCCACCAGGACGCATCACAGCTTTGTTTCCTCAG  731

seq1  CCTTGCCTATCCTGAAGAGTCAGGAAGGTCACTGGCATTAGCTTTGAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTATCCTGAAGAGTCAGGAAGGTCACTGGCATTAGCTTTGAGAG  781

seq1  GTCTGGACCTGATGGGTTTTTTTATCTTTATAACTTCTTGGATTTGGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACCTGATGGGTTTTTTTATCTTTATAACTTCTTGGATTTGGGGC  831

seq1  TCTGGTAATTTCATAAATGCGGGATGTATTTATTTGTTTAGATGCAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAATTTCATAAATGCGGGATGTATTTATTTGTTTAGATGCAAAAT  881

seq1  ATTTTTTATAATTTGAGGGTATAAAATGATTAGAAATTAGAGCTTATGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATAATTTGAGGGTATAAAATGATTAGAAATTAGAGCTTATGAT  931

seq1  TTGCTGATAACTAAAAAACAGTGATCAATCACTACTTATGATTTAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATAACTAAAAAACAGTGATCAATCACTACTTATGATTTAAATAT  981

seq1  TTATGAGGCATCTAAACAAATATGGAAGTGTGAACATTCATATATCCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGCATCTAAACAAATATGGAAGTGTGAACATTCATATATCCCAG  1031

seq1  AAATCAGAAAACAACAAACCATTCAAAGAAGTTCACTAAGCATTAATTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAAACAACAAACCATTCAAAGAAGTTCACTAAGCATTAATTAA  1081

seq1  AACTAAATTTCTAATAATAATGGTGGCCTTCTAATTAGCCATTTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTTCTAATAATAATGGTGGCCTTCTAATTAGCCATTTGAATTC  1131