BAC Information

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BAC

Clone NameB6Ng01-154H06
Chromosome10 (Build37)
Map Location 88,206,053 - 88,207,165
singlet/doubletsinglet
Overlap geneArl1
Upstream geneENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433
Downstream geneUtp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H06.bB6Ng01-154H06.g
ACCDH949492DH949493
length1,1051,084
definitionDH949492|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H06, 5' end.DH949493|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttactcagatacagttctattaaagaatgtatactcttaggggg
aaccctcctatttttaaattagtggttgcatcttgtttgtataaacacta
atatttagctcagactctttcccccttaaaatgaattaaggctttccaaa
gattagtcttagcaaagtagattagaaatacagtgtataatcttcatttg
cttaactgactagtttattttgttggctcactttactgacttatgttatt
ttacagtacttatacttgtcaaaagaattttgtgtatgttgatctgaact
ttgtacaggaactctgtaaggaaggtggggttctgctatgttgctttgcc
aggccctatacagtgaggtagggtagggttcagagtcaggcttgtgggtc
agaaacttgtgtcctaaattatactatctccggatataccaacactggga
acatagacacctaggtgtggtggcacacacttgtagtcctagtacttagg
agacagaggtgggaagacccaagagttcagctttgtggtgaatctgaggc
cagcctgggctgcttgagactatgtctcaaaacaaaacaaaaaaacaacc
aaccaatcaaaaaaattatgctcaagtagttatggatttcaaagtaatgt
ttatataaacttgtctatgctagtaaaatgataagggatacggtccacac
tatcccaaatggctgtttgatgaattcacaacacaatacaaaaccttcac
atgaaaagaaataaaaagcaattttaataagcagtaacgagatgtcttta
gtgtcttccattcatttaccttcgttaataagatgtctttactatcttcc
attcattaccttggtatgaaattggctaaaaataaaaatctttactggtt
ctgtagcaaaaatatcctagttttaaagattaggtatactgtgtaggttt
taagattggtgttctaaaggaattttctgacagtaatctaccacagtgag
cagcatggtccatatgtgtactacgctgtggctctttcagtaaatggaca
ctggcattaaaaaatggcattgggactggagagatggctcaagagaccga
ctgat
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatctttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tccacctcacaccagtcagaatggctaagaccaaaaattcaggtgactgc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcgagcttgcacaaccactctggaaatcagtctagaggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactggtaataaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagccccgaagc
ttagaatacccaagatacaagatacaatttgcaaaacacatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgctcctccttagaattggga
acaaaacacccatggaaggagttacaaagacaaagtttggacctgagata
aaaggatggaccatctagagactgccatacctggggatccatcccataat
cagcctccaaaagctgacaccattgcatacactagcaagattttgctgaa
ggaccctgatatagctgtctcttgtgagctatgccgggacctagcaaaca
cagaagtggatgctcacagtcagttatgggatggatcacagggtcccaat
ggaggagctagagaaagtaccaagagctaggggtctgcaaccctataggt
gaacaacatatgaactaacagtatccctggagctcggttcctagctgcat
atgtcaagaagatggttagtcgaataccgagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88206053_88207165
seq2: B6Ng01-154H06.b_49_1153

seq1  GAATTCTTACTCAGATACAGTTCTATTAAAGAATGTATACTCTTAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCAGATACAGTTCTATTAAAGAATGTATACTCTTAGGGGG  50

seq1  AACCCTCCTATTTTTAAATTAGTGGTTGCATCTTGTTTGTATAAACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTATTTTTAAATTAGTGGTTGCATCTTGTTTGTATAAACACTA  100

seq1  ATATTTAGCTCAGACTCTTTCCCCCTTAAAATGAATTAAGGCTTTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGCTCAGACTCTTTCCCCCTTAAAATGAATTAAGGCTTTCCAAA  150

seq1  GATTAGTCTTAGCAAAGTAGATTAGAAATACAGTGTATAATCTTCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTCTTAGCAAAGTAGATTAGAAATACAGTGTATAATCTTCATTTG  200

seq1  CTTAACTGACTAGTTTATTTTGTTGGCTCACTTTACTGACTTATGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGACTAGTTTATTTTGTTGGCTCACTTTACTGACTTATGTTATT  250

seq1  TTACAGTACTTATACTTGTCAAAAGAATTTTGTGTATGTTGATCTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTACTTATACTTGTCAAAAGAATTTTGTGTATGTTGATCTGAACT  300

seq1  TTGTACAGGAACTCTGTAAGGAAGGTGGGGTTCTGCTATGTTGCTTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGGAACTCTGTAAGGAAGGTGGGGTTCTGCTATGTTGCTTTGCC  350

seq1  AGGCCCTATACAGTGAGGTAGGGTAGGGTTCAGAGTCAGGCTTGTGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTATACAGTGAGGTAGGGTAGGGTTCAGAGTCAGGCTTGTGGGTC  400

seq1  AGAAACTTGTGTCCTAAATTATACTATCTCCGGATATACCAACACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGTGTCCTAAATTATACTATCTCCGGATATACCAACACTGGGA  450

seq1  ACATAGACACCTAGGTGTGGTGGCACACACTTGTAGTCCTAGTACTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACACCTAGGTGTGGTGGCACACACTTGTAGTCCTAGTACTTAGG  500

seq1  AGACAGAGGTGGGAAGACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGTGGGAAGACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGC  550

seq1  CAGCCTGGGCTGCTTGAGACTATGTCTCAAAACAAAACAAAAAAACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGCTGCTTGAGACTATGTCTCAAAACAAAACAAAAAAACAACC  600

seq1  AACCAATCAAAAAAATTATGCTCAAGTAGTTATGGATTTCAAAGTAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCAAAAAAATTATGCTCAAGTAGTTATGGATTTCAAAGTAATGT  650

seq1  TTATATAAACTTGTCTATGCTAGTAAAATGATAAGGGATACGGTCCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAACTTGTCTATGCTAGTAAAATGATAAGGGATACGGTCCACAC  700

seq1  TATCCCAAATGGCTGTTTGATGAATTCACAACACAATACAAAACCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAATGGCTGTTTGATGAATTCACAACACAATACAAAACCTTCAC  750

seq1  ATGAAAAGAAATAAAAAGCAATTTTAATAAGCAGTAACGAGATGTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAAATAAAAAGCAATTTTAATAAGCAGTAACGAGATGTCTTTA  800

seq1  GTGTCTTCCATTCATTTACCTTCGTTAATAAGATGTCTTTACTATCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCCATTCATTTACCTTCGTTAATAAGATGTCTTTACTATCTTCC  850

seq1  ATTCATTTACCTTGGTATGAAATTGGCTAAAAATAAAAATC-TTACTGGT  899
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCA-TTACCTTGGTATGAAATTGGCTAAAAATAAAAATCTTTACTGGT  899

seq1  TCTGTAGCAAAAATATTCCTAGTTTTAAAGATTAGGTATACTGTGTAGGT  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCAAAAATA-TCCTAGTTTTAAAGATTAGGTATACTGTGTAGGT  948

seq1  TTTAAGATT-GTGTTCT-AAGGAATTTTCTGAACAGTAATCTACCACAGT  997
      ||||||||| ||||||| ||||||||||||| ||||||||||||||||||
seq2  TTTAAGATTGGTGTTCTAAAGGAATTTTCTG-ACAGTAATCTACCACAGT  997

seq1  GAGCAGCATGGTCCATATGTGTTACTAACGCTGTGGCTCTTTCAGTAAAT  1047
      ||||||||||||||||||||| |||| |||||||||||||||||||||| 
seq2  GAGCAGCATGGTCCATATGTG-TACT-ACGCTGTGGCTCTTTCAGTAAA-  1044

seq1  TGGACAACTGGCATTTAAAAATATGGCATTGGGACTGGAGAGATGGCTCA  1097
      ||||| |||||||||  |||| ||||||||||||||||||||||||||| 
seq2  TGGAC-ACTGGCATT--AAAAAATGGCATTGGGACTGGAGAGATGGCTC-  1090

seq1  AAGAGCACCGACTGAT  1113
      ||||| ||||||||||
seq2  AAGAG-ACCGACTGAT  1105