BAC Information

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BAC

Clone NameB6Ng01-154I24
Chromosome6 (Build37)10 (Build37)
Map Location 8,223,321 - 8,223,714100,445,206 - 100,446,142
singlet/doubletsingletsinglet
Overlap geneLOC100036521
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3
Downstream geneLOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154I24.bB6Ng01-154I24.g
ACCDH949573DH949574
length9901,102
definitionDH949573|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I24, 5' end.DH949574|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,223,321 - 8,223,714)(100,445,206 - 100,446,142)
sequence
gaattcactttgcagaccaggctggccacaaacacaaaaatctgcctgcc
tctgccccccaagtgcatggattaaaggcatgagccaccatgcccagctc
tggtaattttcagtttcactcatgtcccttgtttccctgtccctggtctg
tccagtgcctctctcttcccttgtaatataagcaaatctctgttcttaac
ttttgaaaaaaatttacactaatatgcttttttcaatgatgattatagaa
gacgttggatcattgtctctttttttaactttttaaatatttatttaatt
ttttggctaatatccacatattagtgagcacataccatgcatgccccttt
gggtctgagttatctcattcaggatgatattttctagttcaatcatttgc
ctacaaaactcaggatgttctcattcttttttttttaattttgttttttt
tattaggtatttattttatttacatttccaatgcgatcccaaaagtccca
cacacactccccacccaattcttggccctggtattcctctgtactgaggc
agataaagtttgcacgaccagtgggcctctctttccactgatggctgacc
aggcctacttctgatacatatgcagctagagacacgagctctggagggtt
ctgggtagttcatattgttgttccacctatagggttgcagatccctttag
ctccttggttactttctctagctcctccattggaggccctgtgatccatc
caatagctgactgtgagcatccacttctgtgtttgctatgccccaacata
gactcacaagagacagctatatctgggtcctttcagcaaaatcttgctag
tgtatgcaatggtgtcagcgtttggaggctgattatgggatggatcccag
aatatggcggtcttcttttaggtagttgaagatcactttctgtttttttt
ctaggatgtggtttccgtcctttaatgttttttttgttgt
gaattcaaaaagttagacttcagagaatcaaataaccctcctaaaaatgg
gctacagagctaaacatagaattctcaactgaggaatattgaatggctga
gaagcacctaaagaaaggttcaacattcatagtcaccagggaaatgcaaa
tcaaaacaagcctgagactccaccagtcagaatggctaagatcaacaaaa
ctcaggtgacagcagatgcgggtgaggatgtggagaaagatgaacattcc
tccattgttggtggatttgcaaactgaaacaaccattctggaaatcagtc
ttgtggttacttagaaaattggacatagtactatctgagaactcagctat
acccctcctgggcctatatccaaaagatttgccaacatatcacaaggaca
cactatgttcatagaagccttatttataatagtcagaagctggaaagaac
acagatggccttcaacagaggaagggatatagaaattgtggtacatttaa
acaatggagtactactcagctattaaaaataatgacttcatgaaattcgc
aggcaaatgaatggaactaaaaatatcatcctgagtgaggtaacctaatc
acaaaagaaaatgcattgtatgcactcactgataagtagatattagccca
aacctcagaatacccaagaatggaacagaatttttttaaaaaaagaatac
cagtcagaaggattaaaggaatatactaaaggcatatctgcattccagtc
aaatcacacagtcctagcaggtcttggatataatcagagcagccatctta
tgttgctggattaaaatttctcctcattagagtctgcacgtaatatatat
atatatatatatatatatatatatatattacagagagagagagagaagag
taaacaaaataatctatacaagtagtaggaacagaatggaagtttgacat
tggggaacattacagaaaaccacaccaagataaaagttaacatattgcaa
taagattacatcatattaaaaattatctaatattaatgatagcagactga
aaaataacatacctatttggatatttcaaatcatagaacctgaaaaataa
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8223321_8223714
seq2: B6Ng01-154I24.b_557_960 (reverse)

seq1  AGACTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCAAACGCTGAC  50
      |||| ||||||| | |||||||||||||||||||||||||||||||||||
seq2  AGACCGCCATATTCTGGGATCCATCCCATAATCAGCCTCCAAACGCTGAC  50

seq1  ACCATTGCATACACTAGCAAGATTTTGCTAAAAGGACCCTGATATAGCTG  100
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTG  100

seq1  TCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCA  150
      ||||||||||| |||||  ||||| |||||||||||||||||||||||||
seq2  TCTCTTGTGAGTCTATGTTGGGGCATAGCAAACACAGAAGTGGATGCTCA  150

seq1  CAGTCAGCTATTGGATGGATCACAGGGCCCCCAGTGGAGGAGCTAGAGAA  200
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  CAGTCAGCTATTGGATGGATCACAGGGCCTCCAATGGAGGAGCTAGAGAA  200

seq1  AGTATCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATT  250
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTAACCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAAT  250

seq1  ATGAACTAACCAGTACC--CCGGAGCTCTTGACTCTAGCTGCATATATAT  298
      |||||||| |||| |||  || |||||| || |||||||||||||| |||
seq2  ATGAACTACCCAGAACCCTCCAGAGCTCGTGTCTCTAGCTGCATATGTAT  300

seq1  CAAAAGATGGCC--------------TGGAAAGAGAGGCCCATTGGACTT  334
      || |||  ||||              |||||||||||||||| ||| | |
seq2  CAGAAGTAGGCCTGGTCAGCCATCAGTGGAAAGAGAGGCCCACTGGTCGT  350

seq1  GCAATCTTTGTATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGA  384
      |||| |||| | |||| |||||||| ||||  ||||||||||      ||
seq2  GCAAACTTTATCTGCCTCAGTACAGAGGAATACCAGGGCCAA------GA  394

seq1  AGTGGGTGGG  394
      | ||||||||
seq2  ATTGGGTGGG  404

seq1: chr10_100445206_100446142
seq2: B6Ng01-154I24.g_235_1167

seq1  CCACCAGTCAGAATGGCTAAGATCAACAAAACTCAGGTGACAGCAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTCAGAATGGCTAAGATCAACAAAACTCAGGTGACAGCAGATGC  50

seq1  GGGTGAGGATGTGGAGAAAGATGAACATTCCTCCATTGTTGGTGGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGATGTGGAGAAAGATGAACATTCCTCCATTGTTGGTGGATTTG  100

seq1  CAAACTGAAACAACCATTCTGGAAATCAGTCTTGTGGTTACTTAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAAACAACCATTCTGGAAATCAGTCTTGTGGTTACTTAGAAAAT  150

seq1  TGGACATAGTACTATCTGAGAACTCAGCTATACCCCTCCTGGGCCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAGTACTATCTGAGAACTCAGCTATACCCCTCCTGGGCCTATAT  200

seq1  CCAAAAGATTTGCCAACATATCACAAGGACACACTATGTTCATAGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGATTTGCCAACATATCACAAGGACACACTATGTTCATAGAAGCC  250

seq1  TTATTTATAATAGTCAGAAGCTGGAAAGAACACAGATGGCCTTCAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAATAGTCAGAAGCTGGAAAGAACACAGATGGCCTTCAACAGA  300

seq1  GGAAGGGATATAGAAATTGTGGTACATTTAAACAATGGAGTACTACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGATATAGAAATTGTGGTACATTTAAACAATGGAGTACTACTCAG  350

seq1  CTATTAAAAATAATGACTTCATGAAATTCGCAGGCAAATGAATGGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAATAATGACTTCATGAAATTCGCAGGCAAATGAATGGAACTA  400

seq1  AAAATATCATCCTGAGTGAGGTAACCTAATCACAAAAGAAAATGCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCATCCTGAGTGAGGTAACCTAATCACAAAAGAAAATGCATTGT  450

seq1  ATGCACTCACTGATAAGTAGATATTAGCCCAAACCTCAGAATACCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCACTGATAAGTAGATATTAGCCCAAACCTCAGAATACCCAAGA  500

seq1  ATGGAACAGAATTTTTTTAAAAAAAGAATACCAGTCAGAAGGATTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAGAATTTTTTTAAAAAAAGAATACCAGTCAGAAGGATTAAAGG  550

seq1  AATATACTAAAGGCATATCTGCATTCCAGTCAAATCACACAGTCCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTAAAGGCATATCTGCATTCCAGTCAAATCACACAGTCCTAGCA  600

seq1  GGTCTTGGATATAATCAGAGCAGCCATCTTATGTTGCTGGATTAAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGATATAATCAGAGCAGCCATCTTATGTTGCTGGATTAAAATTT  650

seq1  CTCCTCATTAGAGTCTGCACGTAATATATATATATATATATATATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATTAGAGTCTGCACGTAATATATATATATATATATATATATATA  700

seq1  TATATATATTACAGAGAGAGAGAGAGAAGAGTAAAACAAAATAATCTATA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATATATATTACAGAGAGAGAGAGAGAAGAGT-AAACAAAATAATCTATA  749

seq1  CAAGTAGTAGGAACAGAATGGAAGTCTGACATTGGGGAACATTACAGAAA  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAGTAGTAGGAACAGAATGGAAGTTTGACATTGGGGAACATTACAGAAA  799

seq1  ACCACACCAAGATAAAAGTTAACATATGCAAATAAGATTACATCATATTA  850
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  ACCACACCAAGATAAAAGTTAACATATTGCAATAAGATTACATCATATTA  849

seq1  AAAATTATCTAAATATTAAATGATTAGCAGACTGAAAAATAACATACCTA  900
      |||||||||| |||||| ||||| ||||||||||||||||||||||||||
seq2  AAAATTATCT-AATATT-AATGA-TAGCAGACTGAAAAATAACATACCTA  896

seq1  TTTGGATAATATCAAATCATAG-ACCTGATAAATAATA  937
      ||||||| || ||||||||||| |||||| ||||||||
seq2  TTTGGAT-ATTTCAAATCATAGAACCTGAAAAATAATA  933