BAC Information

Click to search

BAC

Clone NameB6Ng01-154L04
Chromosome10 (Build37)
Map Location 104,053,546 - 104,054,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154L04.bB6Ng01-154L04.g
ACCDH949673DH949674
length1,150949
definitionDH949673|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L04, 5' end.DH949674|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatagcgaatggctgagaagcacctgaaaaaata
ttaggtatccttaatcatcagggaaatgcagatcaaaacaaccctgagat
tccatctcacaccaggtagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtgaagaaagtggaacactcctccattgttggtg
ggattgcaagcttttacaaccactctggaaatcagtctggcagttgctca
gaaaattggacttggtactaccggaggatcccgcaataccgcttctgggc
ctatatccagaagatgttccaactagtaagaaagacacatgctccactat
gttcatggtagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaaatcctaggcaa
atggatggacctggggggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaactcatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggaagtacaaagacaaaatttggagctgtgacg
aaaggatgggccatctagtgattgctctatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggaaccagatatagctttctcttgggaaactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagggcccca
atggaggagctagagaaagtacccaaggagctaaagtgatctgcaaccct
ataggtcgacacatatgactacagtacccagagctcttgactctagctga
taagtatcaaagatggctagtcagcatcacttaaagagagtcaatgactc
aacttatatgctcagatcagggaatacaggccaaaaaggaatggttggaa


gaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagt
agatgctggcgtggatgtggagaaagaggaacactcctccattgttgatg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctactgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatgcagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggagagttaggtgcatcatctctgaatgaacacagacccagaagtcct
ctattgtatagtgttgggtgcctcatatcagctgtctgtttggtggtcca
gtgtttgaaagatatcaggaatccagattaattaagactgctggttctcc
tacagaagtgcccttctcctcagcttcttttttgtttgttgttttggaat
tttattacaattctaggtatgttgctcagtcacttcacagattcccagga
tccagaccttaaatatacaagaaaacaaacaccgaacactacctttagaa
gccatagtgtataactgcaaactgggggtaggacaaacttcagtaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053546_104054363
seq2: B6Ng01-154L04.g_69_673 (reverse)

seq1  TCCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCG  50
      ||||| |||| ||||||||||||||||||||||||||||||||||| | |
seq2  TCCTAGGTTT-TGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTG  49

seq1  AGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCC  100
      ||||||||||||| || |||||| ||||||||||||| | ||||||||||
seq2  AGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCC  99

seq1  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATT  150
      ||||||||| ||||||||||||||||||||||||||||||||||      
seq2  ATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGC------  143

seq1  TACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAA  200
                                                        
seq2  --------------------------------------------------  143

seq1  TAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAA  250
                                                        
seq2  --------------------------------------------------  143

seq1  TTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAA  300
                                                        
seq2  --------------------------------------------------  143

seq1  TAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTA  350
              | ||||                             |||    
seq2  --------TGAGTA-----------------------------GTA----  152

seq1  CATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCT  400
                     |||||||||||| ||||||||||||||||| ||| 
seq2  ---------------CTCCATTGTGTAGATGTACCACATTTTCTGCATCC  187

seq1  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATA  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATA  237

seq1  AATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGG  500
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGG  287

seq1  GGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTA  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCATCTTCTGGATATATGCCCAGTAGAGGTATTGCTGGATCCTCCGGTA  337

seq1  GTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGT  600
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGT  387

seq1  TGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  650
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTACAAGCCTGCAATCCCATCAACAATGGAGGAGTGTTCCTCTTTCTCC  437

seq1  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  700
      |||||| ||||||||||| ||||||||||||||||||||||||| |||||
seq2  ACATCCACGCCAGCATCTACTGTCACCTGAATTTTTGATCTTAGACATTC  487

seq1  TGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  537

seq1  ATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGATTAAGGATGTTGAACATTTTTTCAGATGCTTCTCTGCCATTCGGTA  587

seq1  TTCCTCAGGTGAGAATTC  818
      ||||||||||||||||||
seq2  TTCCTCAGGTGAGAATTC  605


| Home | SequenceCutter | Blast | Download |