BAC Information

Click to search

BAC

Clone NameB6Ng01-155E07
Chromosome10 (Build37)
Map Location 124,898,766 - 125,045,439
singlet/doubletdoublet
Overlap geneLOC100042992, LOC668317, LOC100042994
Upstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
Downstream geneLrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155E07.bB6Ng01-155E07.g
ACCDH950100DH950101
length8221,128
definitionDH950100|Mus musculus domesticus DNA, BAC clone: B6Ng01-155E07, 5' end.DH950101|Mus musculus domesticus DNA, BAC clone: B6Ng01-155E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,898,766 - 124,900,017)(125,044,291 - 125,045,439)
sequence
gaattcattttctgaaaatagtgttaaacataaataacaaactgcaaatc
atcgtttttagtatgctagttttgtgcaagagaaagggggggtaaataat
gaaagttacatgttttacttatactggaagggatacttgaggaaccagaa
gaaacagatattggtcaattacaaaatgtgggagagacacagaaaaggtg
aaaagaacatggtttgttttctaattttacttctgatacatgctgatttc
ggaagaattcagagatacctgagttagaggaaggaggagctgaaagaatt
ctgaaacaaagaaatctaactgtgcttcagctgagtaaaattcactcatc
aatggagagagaggagacccttgtcaagaatatatgagtagaatgtttta
tgatgttggagcagcatccaaagacacccacaacaaattttgcagtcttt
ctttttagaactaggtgtcctagtttgcttcctattgctgtgataaacac
catgtccaaaagtggtgtgaaagaaagtcaaggtggaggtacggaggcag
aaacttaagcaggggccacggcagaacacaggttagcagtgtgctttcca
aggttggttcagcttaccttcccatacattccaggatcacctggccaggg
gtggcaccacacactgtgagctggtctcctccacatcaatcattaagaaa
atgccccacagacttacctgcagaccagtcaggtagaggcaatttttcag
tgagggtttcttcttcccaggtgactaaaaggaatgaatgtcatattatg
ggagatggaggtggggggtggg
gaattcatttccttctcataattagtatttcctgagtgttttctttcttt
cacatttgaattttaatgacacagtaaagaataatggggagatcacttga
tggagtcaaagattgcatttaattctagtgcgtgttaattggctttatta
aaaattagcattttaaaatttccaattctcttcctaacatatgaaatgtc
actcactttctcgcatcgtaattaaatttgcataggagtaaattttattt
gcctctgttgaggaaacatggaagagctgcctgcacaacaaacatggata
tttctgagtctgcacgttgacaatacaatattcattaatttaaatcacta
caacagcagtacacaggctgcagttgtaattaccattgcttagtaacagt
gtgtctcaggatgacaaggggattaactgaataattattacatgtgcctc
agcttgaaatactctcccagggcagttctggtccctgggtaagagttgct
ggaatagacgaagacatttgagccgaatgctgacgctgctccacagccat
tggagtcatctgtcccagaccaacactgctccacgattaatcacccgata
atcagattctcaggttggtggcaggatgctagaacctgcataggaagcgt
tcaggaaacagttttcaggatggaatttctgtggagggtttagacaccac
acaattaacaggcaacactgcatagcccatgctttacgttgtggcttcct
tagacgcgattgcctctgagtttcccctggtacaccccttcactgaggct
cttcctggttcttgctgtcttctctcctagagcaccattgttctgcagcc
tcctcctctcggatcagtcttccagatcagtaacaaatggcaggaggcgg
cttcgatcacagtattcatttctcatagattttaggacatcagtgatgat
tgccatgacattatatgctatctgcttaaacattttctaaaagctatatt
tatgtgtgcagatattttggctttttttttatggtactcctacatcacca
cttgtctacgaaggctagaagtaggcttagagttcctgtaacgaatatag
gtggttggctgccctgcgggtcctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124898766_124900017
seq2: B6Ng01-155E07.b_46_867

seq1  GAATTCATTTTCTGAAAATAGTGTTAAACATAAATAACAAACTGCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTGAAAATAGTGTTAAACATAAATAACAAACTGCAAATC  50

seq1  ATCGTTTTTAGTATGCTAGTTTTGTGCAAGAGAAAGGGGGGGTAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTTTAGTATGCTAGTTTTGTGCAAGAGAAAGGGGGGGTAAATAAT  100

seq1  GAAAGTTACATGTTTTACTTATACTGGAAGGGATACTTGAGGAACCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTACATGTTTTACTTATACTGGAAGGGATACTTGAGGAACCAGAA  150

seq1  GAAACAGATATTGGTCAATTACAAAATGTGGGAGAGACACAGAAAAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGATATTGGTCAATTACAAAATGTGGGAGAGACACAGAAAAGGTG  200

seq1  AAAAGAACATGGTTTGTTTTCTAATTTTACTTCTGATACATGCTGATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACATGGTTTGTTTTCTAATTTTACTTCTGATACATGCTGATTTC  250

seq1  GGAAGAATTCAGAGATACCTGAGTTAGAGGAAGGAGGAGCTGAAAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTCAGAGATACCTGAGTTAGAGGAAGGAGGAGCTGAAAGAATT  300

seq1  CTGAAACAAAGAAATCTAACTGTGCTTCAGCTGAGTAAAATTCACTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAAAGAAATCTAACTGTGCTTCAGCTGAGTAAAATTCACTCATC  350

seq1  AATGGAGAGAGAGGAGACCCTTGTCAAGAATATATGAGTAGAATGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGAGAGGAGACCCTTGTCAAGAATATATGAGTAGAATGTTTTA  400

seq1  TGATGTTGGAGCAGCATCCAAAGACACCCACAACAAATTTTGCAGTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGAGCAGCATCCAAAGACACCCACAACAAATTTTGCAGTCTTT  450

seq1  CTTTTTAGAACTAGGTGTCCTAGTTTGCTTCCTATTGCTGTGATAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGAACTAGGTGTCCTAGTTTGCTTCCTATTGCTGTGATAAACAC  500

seq1  CATGTCCAAAAGTGGTGTGAAAGAAAGTCAAGGTGGAGGTACGGAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAAAAGTGGTGTGAAAGAAAGTCAAGGTGGAGGTACGGAGGCAG  550

seq1  AAACTTAAGCAGGGGCCACGGCAGAACACAGGTTAGCAGTGTGCTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAGCAGGGGCCACGGCAGAACACAGGTTAGCAGTGTGCTTTCCA  600

seq1  AGGTTGGTTCAGCTTACCTTCCCATACATTCCAGGATCACCTGGCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTTCAGCTTACCTTCCCATACATTCCAGGATCACCTGGCCAGGG  650

seq1  GTGGCACCACACACTGTGAGCTGGTCTCCTCCACATCAATCATTAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCACACACTGTGAGCTGGTCTCCTCCACATCAATCATTAAGAAA  700

seq1  ATGCCCCACAGACTTACCTGCAGACCAGTCAGGTAGAGGCAATTTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCACAGACTTACCTGCAGACCAGTCAGGTAGAGGCAATTTTTCAG  750

seq1  TGAGGGTTTCTTCTTCCCAGGTGACTAAAAGGAATGAATGTCATATTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTCTTCTTCCCAGGTGACTAAAAGGAATGAATGTCATATTATG  800

seq1  GGAGATGGAGGT-GGGGGTGGGACTGGGAAGAAGCAAGATGAACTGAAGA  849
      |||||||||||| |||||||||                            
seq2  GGAGATGGAGGTGGGGGGTGGG----------------------------  822

seq1  CACCTGGTTATATAAAAAAAGGAATGAAGGAAGGGAGGAGGGAAGGAAGG  899
                                                        
seq2  --------------------------------------------------  822

seq1  AAGAGGAGGAGGAGGAGGAAGAAGAAAAAGAAGGAAGAGGAAGGAGCAGG  949
                                                        
seq2  --------------------------------------------------  822

seq1  AGGTGGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAAGAAGAGAA  999
                                                        
seq2  --------------------------------------------------  822

seq1  AGAAGAAAGGTTTAAGTGTCTTCAGTGGACAATTTGAGTACAAAGAAGTC  1049
                                                        
seq2  --------------------------------------------------  822

seq1  CATACCACAACTAATATGATTATTGAAGGAACATTAATCCCTACACAAAT  1099
                                                        
seq2  --------------------------------------------------  822

seq1  ACTATTAGGTATATAAATATTTCTAACCTACAGCAAAGAGATTTAAAGGA  1149
                                                        
seq2  --------------------------------------------------  822

seq1  AAATGCTAGGTAGAAAGGAGTTATTCTGTACACATCACAGCTTCAGTAGG  1199
                                                        
seq2  --------------------------------------------------  822

seq1  TTTCCAGAAGGAACACAGTAGAGGCTAAACTCCTGTACAGATTCATGTGT  1249
                                                        
seq2  --------------------------------------------------  822

seq1  GGG  1252
         
seq2  ---  822

seq1: chr10_125044291_125045439
seq2: B6Ng01-155E07.g_67_1194 (reverse)

seq1  TCCCAGCACCCGCAGGGCAGCCCACACCAACTATAAATCTGTTCCAGGGA  50
      |||||| |||||||||||||||   |||| ||||  ||  ||| |||| |
seq2  TCCCAGGACCCGCAGGGCAGCC--AACCACCTAT--ATTCGTTACAGGAA  46

seq1  CTCTTAAGCCTACTTCTAGCCTCTGTAGGAACCAGGTGCTGATGTAGGGA  100
      ||| ||||||||||||||||||  ||||    || ||| ||||||| |||
seq2  CTC-TAAGCCTACTTCTAGCCTTCGTAG---ACAAGTGGTGATGTA-GGA  91

seq1  GTACCCATAAAAAAAAAGGCAAAATATCTGCACACATTAAATAATAGCTT  150
      ||| |||||||||||||| ||||||||||||||||| ||||| ||||| |
seq2  GTA-CCATAAAAAAAAAGCCAAAATATCTGCACACA-TAAAT-ATAGC-T  137

seq1  TTTAGAAAAATGTTTAAGGCAGATAGCATAATAATGTCATGGCAATCAAT  200
      ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||
seq2  TTTAG-AAAATGTTTAA-GCAGATAGCAT-ATAATGTCATGGCAATC-AT  183

seq1  CACTGATTGTCCTAAAATCTATGGAGAAAATGAATACTGTTGATCGAAGC  250
      |||||| ||||||||||||||| ||| |||||||||||| ||||||||||
seq2  CACTGA-TGTCCTAAAATCTAT-GAG-AAATGAATACTG-TGATCGAAGC  229

seq1  CGCCTCCTGCCATTTGTTACTGATCTGGAAGACTGATCCGAGAGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCTGCCATTTGTTACTGATCTGGAAGACTGATCCGAGAGGAGGAG  279

seq1  GCTGCAGAACAATGGTGCTCTAGGAGAGAAGACAGCAAGAACCAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAACAATGGTGCTCTAGGAGAGAAGACAGCAAGAACCAGGAAGA  329

seq1  GCCTCAGTGAAGGGGTGTACCAGGGGAAACTCAGAGGCAATCGCGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTGAAGGGGTGTACCAGGGGAAACTCAGAGGCAATCGCGTCTAA  379

seq1  GGAAGCCACAACGTAAAGCATGGGCTATGCAGTGTTGCCTGTTAATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCACAACGTAAAGCATGGGCTATGCAGTGTTGCCTGTTAATTGTG  429

seq1  TGGTGTCTAAACCCTCCACAGAAATTCCATCCTGAAAACTGTTTCCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTAAACCCTCCACAGAAATTCCATCCTGAAAACTGTTTCCTGAA  479

seq1  CGCTTCCTATGCAGGTTCTAGCATCCTGCCACCAACCTGAGAATCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTATGCAGGTTCTAGCATCCTGCCACCAACCTGAGAATCTGATT  529

seq1  ATCGGGTGATTAATCGTGGAGCAGTGTTGGTCTGGGACAGATGACTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGTGATTAATCGTGGAGCAGTGTTGGTCTGGGACAGATGACTCCAA  579

seq1  TGGCTGTGGAGCAGCGTCAGCATTCGGCTCAAATGTCTTCGTCTATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGAGCAGCGTCAGCATTCGGCTCAAATGTCTTCGTCTATTCCA  629

seq1  GCAACTCTTACCCAGGGACCAGAACTGCCCTGGGAGAGTATTTCAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTACCCAGGGACCAGAACTGCCCTGGGAGAGTATTTCAAGCTG  679

seq1  AGGCACATGTAATAATTATTCAGTTAATCCCCTTGTCATCCTGAGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGTAATAATTATTCAGTTAATCCCCTTGTCATCCTGAGACACA  729

seq1  CTGTTACTAAGCAATGGTAATTACAACTGCAGCCTGTGTACTGCTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTAAGCAATGGTAATTACAACTGCAGCCTGTGTACTGCTGTTGT  779

seq1  AGTGATTTAAATTAATGAATATTGTATTGTCAACGTGCAGACTCAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAAATTAATGAATATTGTATTGTCAACGTGCAGACTCAGAAAT  829

seq1  ATCCATGTTTGTTGTGCAGGCAGCTCTTCCATGTTTCCTCAACAGAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTTTGTTGTGCAGGCAGCTCTTCCATGTTTCCTCAACAGAGGCA  879

seq1  AATAAAATTTACTCCTATGCAAATTTAATTACGATGCGAGAAAGTGAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTACTCCTATGCAAATTTAATTACGATGCGAGAAAGTGAGTG  929

seq1  ACATTTCATATGTTAGGAAGAGAATTGGAAATTTTAAAATGCTAATTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATATGTTAGGAAGAGAATTGGAAATTTTAAAATGCTAATTTTT  979

seq1  AATAAAGCCAATTAACACGCACTAGAATTAAATGCAATCTTTGACTCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCAATTAACACGCACTAGAATTAAATGCAATCTTTGACTCCAT  1029

seq1  CAAGTGATCTCCCCATTATTCTTTACTGTGTCATTAAAATTCAAATGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATCTCCCCATTATTCTTTACTGTGTCATTAAAATTCAAATGTGA  1079

seq1  AAGAAAGAAAACACTCAGGAAATACTAATTATGAGAAGGAAATGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAACACTCAGGAAATACTAATTATGAGAAGGAAATGAATTC  1128