BAC Information

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BAC

Clone NameB6Ng01-155G16
Chromosome10 (Build37)
Map Location 115,969,592 - 116,171,299
singlet/doubletdoublet
Overlap geneCnot2, LOC668080
Upstream geneLgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
Downstream geneEG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155G16.bB6Ng01-155G16.g
ACCDH950205DH950206
length1,269524
definitionDH950205|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G16, 5' end.DH950206|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,969,592 - 115,970,877)(116,170,770 - 116,171,299)
sequence
gaattccaagccgtgggagacagaagcaggaagttctgggattgatctag
gccagctttggatacatgaagcttaactcaaaaacagcaccccccccccc
tcaaaaaaaaaacccacaaattccaagccaaacaaaaccctttctctatg
gcaagcagaacaggttctgaggaaagtgctgggtgagaaaagcaggccct
ccagtgccaggtcaacagggcagagtacaggtaacgacagcacgaattcc
tcctgcctctgtgatctcagcaactagtctacactactcaaactccaaac
acttacttactctaagcatctacaacgtcaacagttttctctctgctgta
gtctactagcacaaggtactccaacagcatccaaacaggtatttatctat
ttgttcttcattctccttaaatctactttcctccatctaagcaatttaaa
tgaaaatttatgttcatgaatctgatcaaatttcttcaacaaataaataa
gctctgtaatcaatctctctgacctctcttcaaaaaagtcttccctccca
ccattacactatgggcaaaccttcagttgctcaaattcctttctacccca
gcctctgtacacgtggctggctgtcaagtgttcttgcccactgctcactc
actcttctttgaaattttaatgctaaattacaaggtctgctcttcttaat
cagtaaaaagaaagcacgttatctattataaccctaattgtaaaatgact
cttttctcagctctgattcaggaaaagccaggtggtgctcatatctaacc
cctagcattttagaggcagaggcagttggagctctaagtctgagcagcct
ggttggtttatacggcaagttgctgtatagctggggctacgcagtgaaga
cctgttgcaaacaagcaaagcttatttgtaccatcattacaatgcaaagc
tagcaaacagttagcatcccatattttttatcagaaaaactcaggactgg
aagtaagtaactgctctagactatgtatgcatttgataacgaaacacaca
ggcttgatctaatctattaagcatttatcgacccacatcaacataaatac
acttatcctttaaggtggttttctcataaaaaatttagggtgtcacatat
tatcacaccacaaaaaggttccttcctttgcgatgagaacacaaagagca
aggcaatgattacacggcaactacgagaacatggtgcaaacatggggcgt
attattcacccagagacaa
actgaatgtgtatcgcagaagcacttcccttgagctccattactgcaggt
cccatgctggatgctatccttgtgacatttggtcaacagagtgggtgatg
aaggatgttcaaccagattggactgcccatagtaacaggcgttcgggcca
gccactcatcgagaacaatatggccaaggaaggcatacggtacttaactt
tctcatgcgttgatgtttctcttttgggcaggagactgttcaccctggaa
agttgactgaaataggaatctctgacgagaagggagtgcctcatcagacg
tcaccctgagtcattttgttggcaggttaacgttatcagattggctctgg
ggcttggctaaatggagaaaagtcagattgtcaaagaatgcatctgggag
aagggaaggtgtgagcacttaactagaggctgggaaggaccgtttgtaag
ctttgtaagctgctggctggaagacactgagcagggtagccagtgatgag
aaagtgggtgggtggggagttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115969592_115970877
seq2: B6Ng01-155G16.b_43_1311

seq1  GAATTCCAAGCCGTGGGAGACAGAAGCAGGAAGTTCTGGGATTGATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCGTGGGAGACAGAAGCAGGAAGTTCTGGGATTGATCTAG  50

seq1  GCCAGCTTTGGATACATGAAGCTTAACTCAAAAACAGCACCCCCCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTTGGATACATGAAGCTTAACTCAAAAACAGCACCCCCCCCCCC  100

seq1  TCAAAAAAAAAACCCACAAATTCCAAGCCAAACAAAACCCTTTCTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAACCCACAAATTCCAAGCCAAACAAAACCCTTTCTCTATG  150

seq1  GCAAGCAGAACAGGTTCTGAGGAAAGTGCTGGGTGAGAAAAGCAGGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGAACAGGTTCTGAGGAAAGTGCTGGGTGAGAAAAGCAGGCCCT  200

seq1  CCAGTGCCAGGTCAACAGGGCAGAGTACAGGTAACGACAGCACGAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCAGGTCAACAGGGCAGAGTACAGGTAACGACAGCACGAATTCC  250

seq1  TCCTGCCTCTGTGATCTCAGCAACTAGTCTACACTACTCAAACTCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCTGTGATCTCAGCAACTAGTCTACACTACTCAAACTCCAAAC  300

seq1  ACTTACTTACTCTAAGCATCTACAACGTCAACAGTTTTCTCTCTGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTACTCTAAGCATCTACAACGTCAACAGTTTTCTCTCTGCTGTA  350

seq1  GTCTACTAGCACAAGGTACTCCAACAGCATCCAAACAGGTATTTATCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAGCACAAGGTACTCCAACAGCATCCAAACAGGTATTTATCTAT  400

seq1  TTGTTCTTCATTCTCCTTAAATCTACTTTCCTCCATCTAAGCAATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCATTCTCCTTAAATCTACTTTCCTCCATCTAAGCAATTTAAA  450

seq1  TGAAAATTTATGTTCATGAATCTGATCAAATTTCTTCAACAAATAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTATGTTCATGAATCTGATCAAATTTCTTCAACAAATAAATAA  500

seq1  GCTCTGTAATCAATCTCTCTGACCTCTCTTCAAAAAAGTCTTCCCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAATCAATCTCTCTGACCTCTCTTCAAAAAAGTCTTCCCTCCCA  550

seq1  CCATTACACTATGGGCAAACCTTCAGTTGCTCAAATTCCTTTCTACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACACTATGGGCAAACCTTCAGTTGCTCAAATTCCTTTCTACCCCA  600

seq1  GCCTCTGTACACGTGGCTGGCTGTCAAGTGTTCTTGCCCACTGCTCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTACACGTGGCTGGCTGTCAAGTGTTCTTGCCCACTGCTCACTC  650

seq1  ACTCTTCTTTGAAATTTTAATGCTAAATTACAAGGTCTGCTCTTCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTTGAAATTTTAATGCTAAATTACAAGGTCTGCTCTTCTTAAT  700

seq1  CAGTAAAAAGAAAGCACGTTATCTATTATAACCCTAATTGTAAAATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAAGAAAGCACGTTATCTATTATAACCCTAATTGTAAAATGACT  750

seq1  CTTTTCTCAGCTCTGATTCAGGAAAAGCCAGGTGGTGCTCATATCTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAGCTCTGATTCAGGAAAAGCCAGGTGGTGCTCATATCTAACC  800

seq1  CCTAGCATTTTAGAGGCAGAGGCAGTTGGAGCTCTAAGTCTGAGCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATTTTAGAGGCAGAGGCAGTTGGAGCTCTAAGTCTGAGCAGCCT  850

seq1  GGTTGGTTTATACGGCAAGTTGCTGTATAGCTGGGGCTACGCAGTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTATACGGCAAGTTGCTGTATAGCTGGGGCTACGCAGTGAAGA  900

seq1  CCTGTTGCAAACAAGCAAAGCTTATTTGTACCATCATTACAATGCAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCAAACAAGCAAAGCTTATTTGTACCATCATTACAATGCAAAGC  950

seq1  TAGCAAACAGTTAGCATCCCATATTTTTTATCAAGAAAAACTCAGGACTG  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCAAACAGTTAGCATCCCATATTTTTTATC-AGAAAAACTCAGGACTG  999

seq1  GAAGTTAAGTAACCTGCTCTAGACTATGTATGCATTTGATAACGACACAC  1050
      |||| ||||||| |||||||||||||||||||||||||||||||| ||||
seq2  GAAG-TAAGTAA-CTGCTCTAGACTATGTATGCATTTGATAACGAAACAC  1047

seq1  ACAGGCTTTGATCCTAATCTATTAAGCATTTAGTCGACCCACAATCAAAC  1100
      |||||| ||||| ||||||||||||||||||| ||||||||| ||| |||
seq2  ACAGGC-TTGAT-CTAATCTATTAAGCATTTA-TCGACCCAC-ATC-AAC  1092

seq1  ATAAATACAACTTATCCTTTATAGTGTGTTTTCTTCATAAAATATTAAGG  1150
      |||||||| ||||||||||||  ||| |||||| |||||||| ||| |||
seq2  ATAAATAC-ACTTATCCTTTAAGGTG-GTTTTC-TCATAAAAAATTTAGG  1139

seq1  GTGTCAACATAATTATCAACAACAAAAAAAGG-TCCTTCCTTTGCGATGA  1199
      ||||| |||| |||||| ||| || ||||||| |||||||||||||||||
seq2  GTGTC-ACAT-ATTATC-ACACCACAAAAAGGTTCCTTCCTTTGCGATGA  1186

seq1  GCAACAAAGAAAGCAAGGCAGCTATGATCACACGG-TACTACAGAGACCA  1248
      | |||| | | |||||||||   ||||| ||||||  ||||| |||| ||
seq2  G-AACACAAAGAGCAAGGCA---ATGATTACACGGCAACTAC-GAGAACA  1231

seq1  CTGTGCAAAACCAT-GGGCTGATTATACA-CCAGAGACAA  1286
        |||||||  ||| ||||  ||||| || ||||||||||
seq2  TGGTGCAAA--CATGGGGCGTATTATTCACCCAGAGACAA  1269

seq1: chr10_116170770_116171299
seq2: B6Ng01-155G16.g_66_595 (reverse)

seq1  TGTAACTCCCCACCCACCCACTTTCTCATCACTGGCTACCCTGCTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCCCACCCACCCACTTTCTCATCACTGGCTACCCTGCTCAGTG  50

seq1  TCTTCCAGCCAGCAGCTTACAAAGCTTACAAACGGTCCTTCCCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCCAGCAGCTTACAAAGCTTACAAACGGTCCTTCCCAGCCTCT  100

seq1  AGTTAAGTGCTCACACCTTCCCTTCTCCCAGATGCATTCTTTGACAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTGCTCACACCTTCCCTTCTCCCAGATGCATTCTTTGACAATCT  150

seq1  GACTTTTCTCCATTTAGCCAAGCCCCAGAGCCAATCTGATAACGTTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTCTCCATTTAGCCAAGCCCCAGAGCCAATCTGATAACGTTAACC  200

seq1  TGCCAACAAAATGACTCAGGGTGACGTCTGATGAGGCACTCCCTTCTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAAAATGACTCAGGGTGACGTCTGATGAGGCACTCCCTTCTCGT  250

seq1  CAGAGATTCCTATTTCAGTCAACTTTCCAGGGTGAACAGTCTCCTGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCCTATTTCAGTCAACTTTCCAGGGTGAACAGTCTCCTGCCCA  300

seq1  AAAGAGAAACATCAACGCATGAGAAAGTTAAGTACCGTATGCCTTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAACATCAACGCATGAGAAAGTTAAGTACCGTATGCCTTCCTTG  350

seq1  GCCATATTGTTCTCGATGAGTGGCTGGCCCGAACGCCTGTTACTATGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTGTTCTCGATGAGTGGCTGGCCCGAACGCCTGTTACTATGGGC  400

seq1  AGTCCAATCTGGTTGAACATCCTTCATCACCCACTCTGTTGACCAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATCTGGTTGAACATCCTTCATCACCCACTCTGTTGACCAAATGT  450

seq1  CACAAGGATAGCATCCAGCATGGGACCTGCAGTAATGGAGCTCAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGATAGCATCCAGCATGGGACCTGCAGTAATGGAGCTCAAGGGAA  500

seq1  GTGCTTCTGCGATACACATTCAGTGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  GTGCTTCTGCGATACACATTCAGTGAATTC  530