BAC Information

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BAC

Clone NameB6Ng01-155P06
Chromosome10 (Build37)
Map Location 93,531,171 - 93,655,644
singlet/doubletdoublet
Overlap geneFgd6, Nr2c1
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
Downstream geneNdufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P06.bB6Ng01-155P06.g
ACCDH950588DH950589
length8261,164
definitionDH950588|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P06, 5' end.DH950589|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,531,171 - 93,531,996)(93,654,485 - 93,655,644)
sequence
gaattccaggacaaccagggctacacagagaaaccctgtctcaaaaaacc
aaaaaaaaaaaaaaaagaaaaaaaaaagaaaaaaaaagaaacatcagttt
ttggtatgctaataaactagattagacacctgctctattttattggtggc
agctttatgatcagtagaacggttttctgttggctttaacagaaaggttg
cagtctgcactgcaggaagtttattttaaggaatcattcctccaagcctt
ccaaacctggaaacatcaaggttgctgatatgaggtcgctattttagctc
agtacttgttttggtgtagacttttatagaattcttttcacttctaggct
agaaacagcagagacctgacctggctgcctcccagctaggctgggggtgg
ggagcaagatattggactgtgctcagcctggagttcctccaccatctact
gggggtgaaccggagccagaactggtccttatttacaggccagggagctc
cccaatgaggtagatggagcgtcatggagccgtcccacacagtctgctca
ccttggcgtaggcaggccaccagtttaatagttactctttggccccagct
actgacctctggtgctgtgttttttgaagccatcaactggctagcctttg
ttcttgagagttggtgatgtagctcagttgtacagtgcttgcctagcatg
tgtggcttgtccattactgagagacttaggccaaacaagccccctacaga
ccaaaggaaagacgcagtctatgtattctcgtattctgagagttaaaaaa
tttctgtgcttggggtgtgtgtgtgt
gaattccacataagccttttcctgaaatctctcaattagctccatgttct
ccaggcctgggtgatctaaggaatatgatataaaagaatataggtattcc
agttctgagtgttcatttaataattcatgggacagggaggcagaggacag
aggatcaaacagttcatttgacagagatgccccacatacagtgttttgtt
cctttattccataagtgcttgctgaatacaccaacagtgtcttgtagcca
gaaggaactcatcacatctaataaaaaccagaccactgtgtactactaat
attttttctcaaaagcagtgtaatggtttttgtttagctttttcttttct
cttctcttttctttcttttttttctctctctctctctctttccttttttt
ttttttaccattttgcattcaacaacataaaataacctaaaagactaaat
ttaaaagcacccataatccatgaaatatttgcatgttgtgtttgtcaagg
agccacccagatatggccaactttaaaagtatttatgaaattaagaatta
caaacatttttatatttctatcagaaattcataatgaaggaacatgacat
aatctacaaaacgttttgatagtcatatttcacaaaatagaaatatttaa
agtaataccatcaatttatagcttaacttttcaattttacccaaagaaaa
ataaaatcggcaagtttggttatgatcaaaatggatatacacgtgggctc
aagtgtgtctcattggtaaagctattgcctgtcctgtataagggcctatg
ctggatccccagtgccacaaagaaaataaaggaaatgagtaaaaatagaa
atacagatattggctcatgtgaagcacatggcctgccctctctcgagtcc
agccctgggcttgtgtgaaacattcaatagttgacaaggtttaattattc
ttacttatagcacctgagaggaagaagcaagctccctgggatattttatt
aggaccctaggacagaaagaattactggtggagtggaggccacgaccttc
taaggattgttgcattttcctttattcacaaactgggagttcgagagtcc
ttttacttgaagaaaactagaccctgaagaagccaggaggccattcttgg
ccatgtctgcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93531171_93531996
seq2: B6Ng01-155P06.b_44_869

seq1  GAATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50

seq1  AAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAGAAACATCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAGAAACATCAGTTT  100

seq1  TTGGTATGCTAATAAACTAGATTAGACACCTGCTCTATTTTATTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGCTAATAAACTAGATTAGACACCTGCTCTATTTTATTGGTGGC  150

seq1  AGCTTTATGATCAGTAGAACGGTTTTCTGTTGGCTTTAACAGAAAGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGATCAGTAGAACGGTTTTCTGTTGGCTTTAACAGAAAGGTTG  200

seq1  CAGTCTGCACTGCAGGAAGTTTATTTTAAGGAATCATTCCTCCAAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCACTGCAGGAAGTTTATTTTAAGGAATCATTCCTCCAAGCCTT  250

seq1  CCAAACCTGGAAACATCAAGGTTGCTGATATGAGGTCGCTATTTTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTGGAAACATCAAGGTTGCTGATATGAGGTCGCTATTTTAGCTC  300

seq1  AGTACTTGTTTTGGTGTAGACTTTTATAGAATTCTTTTCACTTCTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTTTTGGTGTAGACTTTTATAGAATTCTTTTCACTTCTAGGCT  350

seq1  AGAAACAGCAGAGACCTGACCTGGCTGCCTCCCAGCTAGGCTGGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCAGAGACCTGACCTGGCTGCCTCCCAGCTAGGCTGGGGGTGG  400

seq1  GGAGCAAGATATTGGACTGTGCTCAGCCTGGAGTTCCTCCACCATCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGATATTGGACTGTGCTCAGCCTGGAGTTCCTCCACCATCTACT  450

seq1  GGGGGTGAACCGGAGCCAGAACTGGTCCTTATTTACAGGCCAGGGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAACCGGAGCCAGAACTGGTCCTTATTTACAGGCCAGGGAGCTC  500

seq1  CCCAATGAGGTAGATGGAGCGTCATGGAGCCGTCCCACACAGTCTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGAGGTAGATGGAGCGTCATGGAGCCGTCCCACACAGTCTGCTCA  550

seq1  CCTTGGCGTAGGCAGGCCACCAGTTTAATAGTTACTCTTTGGCCCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCGTAGGCAGGCCACCAGTTTAATAGTTACTCTTTGGCCCCAGCT  600

seq1  ACTGACCTCTGGTGCTGTGTTTTTTGAAGCCATCAACTGGCTAGCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCTGGTGCTGTGTTTTTTGAAGCCATCAACTGGCTAGCCTTTG  650

seq1  TTCTTGAGAGTTGGTGATGTAGCTCAGTTGTACAGTGCTTGCCTAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAGTTGGTGATGTAGCTCAGTTGTACAGTGCTTGCCTAGCATG  700

seq1  TGTGGCTTGTCCATTACTGAGAGACTTAGGCCAAACAAGCCCCCTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGTCCATTACTGAGAGACTTAGGCCAAACAAGCCCCCTACAGA  750

seq1  CCAAAGGAAAGACGCAGTCTATGTATTCTCGTATTCTGAGAGTTAAAAGA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCAAAGGAAAGACGCAGTCTATGTATTCTCGTATTCTGAGAGTTAAAAAA  800

seq1  TTTCTGTGCTTGGGGTGTGTGTGTGT  826
      ||||||||||||||||||||||||||
seq2  TTTCTGTGCTTGGGGTGTGTGTGTGT  826

seq1: chr10_93654485_93655644
seq2: B6Ng01-155P06.g_70_1233 (reverse)

seq1  AGCTGCAGACATGG-CAAGATGGGCCTCTTGCTTTCCTTCCAGCGTCTAG  49
      |||||||||||||| |||||  |||||| ||  |||  | ||| ||||||
seq2  AGCTGCAGACATGGCCAAGAATGGCCTCCTGGCTTC--TTCAGGGTCTAG  48

seq1  TTTTCTGTCAGTAAAGGGGC-CTCGAACT-CCAGTTTGTGAAT-AGGGGA  96
      ||||||   |||||| || | |||||||| ||||||||||||| | || |
seq2  TTTTCTTCAAGTAAAAGGACTCTCGAACTCCCAGTTTGTGAATAAAGGAA  98

seq1  AATGC-ACAGTCCTT-GAGGGTCTGTGCCTCCACTCCA-CAGGTATTCTT  143
      ||||| ||| ||||| || ||||   |||||||||||| |||  ||||||
seq2  AATGCAACAATCCTTAGAAGGTCGTGGCCTCCACTCCACCAGTAATTCTT  148

seq1  TCTGTTCCTATGTGTCCTAATAAAATTATCCAAGCGAGCCTGCTTCTTCC  193
      |||| ||||| | |||||||||||| ||||| || |||| ||||||||||
seq2  TCTG-TCCTA-GGGTCCTAATAAAA-TATCCCAGGGAGCTTGCTTCTTCC  195

seq1  TCTCA-GTGCTATGAGTAAG-ATAATTAAACCTTGTGCACTATTGAATGT  241
      ||||| ||||||| |||||| |||||||||||||||  ||||||||||||
seq2  TCTCAGGTGCTATAAGTAAGAATAATTAAACCTTGTCAACTATTGAATGT  245

seq1  TTCACACAAGCCCAGGGCTGGGACTCGGGAGAGGGCAGGCCATGTGCTTC  291
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TTCACACAAGCCCAGGGCT-GGACTCGAGAGAGGGCAGGCCATGTGCTTC  294

seq1  ACATGAGCCAATAATCTGTATTTCTATTTTTACTCATTTCCTTTATTTTC  341
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCCAAT-ATCTGTATTTCTATTTTTACTCATTTCCTTTATTTTC  343

seq1  TTTGTGGCACTGGGGATCCAGCATAGGCCCTTATACAGGACAGGCAATAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCACTGGGGATCCAGCATAGGCCCTTATACAGGACAGGCAATAG  393

seq1  CTTTACCAATGAGACACACTTGAGCCCACGTGTATATCCA-TTTGATCAT  440
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTACCAATGAGACACACTTGAGCCCACGTGTATATCCATTTTGATCAT  443

seq1  AACC-AACTTGCCGATTTTATTTTTCTTTGGGTAAAATTGAAAAGTTAAG  489
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTTGCCGATTTTATTTTTCTTTGGGTAAAATTGAAAAGTTAAG  493

seq1  CTATAAATTGATGGTATTACTTTAAATATTTCTATTTTGTGAAATATGAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTGATGGTATTACTTTAAATATTTCTATTTTGTGAAATATGAC  543

seq1  TATCAAAACGTTTTGTAGATTATGTCATGTTCCTTCATTATGAATTTCTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACGTTTTGTAGATTATGTCATGTTCCTTCATTATGAATTTCTG  593

seq1  ATAGAAATATAAAAATGTTTGTAATTCTTAATTTCATAAATACTTTTAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATATAAAAATGTTTGTAATTCTTAATTTCATAAATACTTTTAAA  643

seq1  GTTGGCCATATCTGGGTGGCTCCTTGACAAACACAACATGCAAATATTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCATATCTGGGTGGCTCCTTGACAAACACAACATGCAAATATTTC  693

seq1  ATGGATTATGGGTGCTTTTAAATTTAGTCTTTTAGGTTATTTTATGTTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTATGGGTGCTTTTAAATTTAGTCTTTTAGGTTATTTTATGTTGT  743

seq1  TGAATGCAAAATGGTAAAAAAAAAAAAAGGAAAGAGAGAGAGAGAGAGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAAAATGGTAAAAAAAAAAAAAGGAAAGAGAGAGAGAGAGAGAA  793

seq1  AAAAAAGAAAGAAAAGAGAAGAGAAAAGAAAAAGCTAAACAAAAACCATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGAAAAGAGAAGAGAAAAGAAAAAGCTAAACAAAAACCATT  843

seq1  ACACTGCTTTTGAGAAAAAATATTAGTAGTACACAGTGGTCTGGTTTTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTTTGAGAAAAAATATTAGTAGTACACAGTGGTCTGGTTTTTA  893

seq1  TTAGATGTGATGAGTTCCTTCTGGCTACAAGACACTGTTGGTGTATTCAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGATGAGTTCCTTCTGGCTACAAGACACTGTTGGTGTATTCAG  943

seq1  CAAGCACTTATGGAATAAAGGAACAAAACACTGTATGTGGGGCATCTCTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTTATGGAATAAAGGAACAAAACACTGTATGTGGGGCATCTCTG  993

seq1  TCAAATGAACTGTTTGATCCTCTGTCCTCTGCCTCCCTGTCCCATGAATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAACTGTTTGATCCTCTGTCCTCTGCCTCCCTGTCCCATGAATT  1043

seq1  ATTAAATGAACACTCAGAACTGGAATACCTATATTCTTTTATATCATATT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAACACTCAGAACTGGAATACCTATATTCTTTTATATCATATT  1093

seq1  CCTTAGATCACCCAGGCCTGGAGAACATGGAGCTAATTGAGAGATTTCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATCACCCAGGCCTGGAGAACATGGAGCTAATTGAGAGATTTCAG  1143

seq1  GAAAAGGCTTATGTGGAATTC  1160
      |||||||||||||||||||||
seq2  GAAAAGGCTTATGTGGAATTC  1164