BAC Information

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BAC

Clone NameB6Ng01-156I19
Chromosome10 (Build37)
Map Location 40,922,924 - 41,124,491
singlet/doubletdoublet
Overlap geneA530089I17Rik, LOC633979
Upstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
Downstream geneZbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156I19.bB6Ng01-156I19.g
ACCDH951024DH951025
length1,1411,078
definitionDH951024|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I19, 5' end.DH951025|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,922,924 - 40,924,129)(41,123,405 - 41,124,491)
sequence
gaattctacatccagatcagcaggcagcaagaagagagaacaagacactc
gcctggcttgagcatctgaaacctcaaagcccacaccctgagacacactt
cctccaacaaggccacacctcctaatagtgtcactccctatgggcctagg
gtggccactttcatgctcacatcacgtgccaacttccaataggtacctgt
attcttagatcctcctattctgagctcatcagagtccccagtgctctgca
caaaccctggcaccccagtcttcctgggttatgagatttgtagaataccc
ggctgtgtatgttctgaggtgagtgccgtccatgggtgatgccatttggg
tgtatcctgtgttaaaaggctttggggaggtgaccgtatcatgagggctc
tgacataatctctgactgacccactgatggatttgtcataatttggtgac
attactggaaagaagtggaatgcaggaggtgtagcccaactggaggaagc
ttctgaggggcagttcttgtcctgggctcatcccctgctacttctgcctc
ctgcctgctgtaagggaaacagcctcgccccgcttacaaggctttggttt
gccacaacccagaaataatggaaccagccacacatggactaataattctg
aaatcgtgaccccctaaatcgatctaccctctttttgaatggtttccatc
agatacatgttacagaaatcactagtgacaaacatcactacttttgctac
cctactattttctgctttttgtgtgaacatttggagatagagttttaaaa
ttattgtatttgtgctagcaagatggctcagtgagtataggtgtgggctt
cgaagcctgacaacctggatttgatccctagaacccccatgttgggagag
ggctgatgccccaagttgtcctctcaccttcacacaagcatagtagtatg
acatacacgtatgcatgcacacatgcgcgagcgcgcgcacacacacacac
tcacatacactcacatcaaataaacagaaaacaaaaactctatcagaaca
catttatttttaaaggtatatttttcactcatatccaaaagggacaacct
aaaatacaagaacttgtgtccttagtggctctggcagcctt
gaattcagggacatatgagatatgtgggtagacctaaacaactctgtgga
gaaagatagctacagattttaaaatgtttagtaagtctcaaattgagtta
ataacaggcaaatcataggtaagtgcattgtaatcaatttttggaaaaaa
gatgcaactgagagcaggtacaaatgagagcaggtgcagctcaagagcag
gtgcagctaaagagcaggtgcagctgagagagagcaggtgcagctagaga
gcaggtgagtctgagagcaggtgcagctgagagcaggtgcagttgggagc
aggtgcctgtaccctgtttcactctcttttgacttctggttcacccaggg
cacctagtgattttgttgatctactctcctggcttttccagggtcttccc
ttcctgtggctcccaacttaatagaagagacccacatgccagagaaggcc
cagaggcagagccagtgggcaagagagcagagattctagagcgatctgga
acctggtttagagaaatctctttaatcacattctggggcagagtttccac
aagatggcaatgtttcccgtaggatccatggaaacagttactgggctgct
gaagccaacctgtgggttactaaggttttctttgctgctaaaaacggctt
tgtctgcaagtgttcctgagttggttttaagagagtaagtcaggtatgct
gccaatccaccctccctgcccttgcccccacagtgcacagtgggggaagc
tggggtcatcatctaatgtgaagagtttgaagtgaatacaaactatttcc
gcaatgcagacaataagtgcattgtgggcaatggttatctacacacagac
ctttttcagtagcctcttcatccttatttgaaaatgtgaagggtcagtgg
gcgcttaccattgcctgaagactactttctggtgtgtggtcccaactaat
ctcagagtgtcccctcttctgttgactagcttgcaggaccacaaaagctt
ctttcttctggagccattgaaagctgtcagggattgaaggctatcaagct
atgcagagtgctctgccctcaattcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40922924_40924129
seq2: B6Ng01-156I19.b_46_1186

seq1  GAATTCTACATCCAGATCAGCAGGCAGCAAGAAGAGAGAACAAGACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCCAGATCAGCAGGCAGCAAGAAGAGAGAACAAGACACTC  50

seq1  GCCTGGCTTGAGCATCTGAAACCTCAAAGCCCACACCCTGAGACACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTTGAGCATCTGAAACCTCAAAGCCCACACCCTGAGACACACTT  100

seq1  CCTCCAACAAGGCCACACCTCCTAATAGTGTCACTCCCTATGGGCCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAAGGCCACACCTCCTAATAGTGTCACTCCCTATGGGCCTAGG  150

seq1  GTGGCCACTTTCATGCTCACATCACGTGCCAACTTCCAATAGGTACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTTTCATGCTCACATCACGTGCCAACTTCCAATAGGTACCTGT  200

seq1  ATTCTTAGATCCTCCTATTCTGAGCTCATCAGAGTCCCCAGTGCTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGATCCTCCTATTCTGAGCTCATCAGAGTCCCCAGTGCTCTGCA  250

seq1  CAAACCCTGGCACCCCAGTCTTCCTGGGTTATGAGATTTGTAGAATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTGGCACCCCAGTCTTCCTGGGTTATGAGATTTGTAGAATACCC  300

seq1  GGCTGTGTATGTTCTGAGGTGAGTGCCGTCCATGGGTGATGCCATTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTATGTTCTGAGGTGAGTGCCGTCCATGGGTGATGCCATTTGGG  350

seq1  TGTATCCTGTGTTAAAAGGCTTTGGGGAGGTGACCGTATCATGAGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGTGTTAAAAGGCTTTGGGGAGGTGACCGTATCATGAGGGCTC  400

seq1  TGACATAATCTCTGACTGACCCACTGATGGATTTGTCATAATTTGGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAATCTCTGACTGACCCACTGATGGATTTGTCATAATTTGGTGAC  450

seq1  ATTACTGGAAAGAAGTGGAATGCAGGAGGTGTAGCCCAACTGGAGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGGAAAGAAGTGGAATGCAGGAGGTGTAGCCCAACTGGAGGAAGC  500

seq1  TTCTGAGGGGCAGTTCTTGTCCTGGGCTCATCCCCTGCTACTTCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGGGCAGTTCTTGTCCTGGGCTCATCCCCTGCTACTTCTGCCTC  550

seq1  CTGCCTGCTGTAAGGGAAACAGCCTCGCCCCGCTTACAAGGCTTTGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTGTAAGGGAAACAGCCTCGCCCCGCTTACAAGGCTTTGGTTT  600

seq1  GCCACAACCCAGAAATAATGGAACCAGCCACACATGGACTAATAATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACCCAGAAATAATGGAACCAGCCACACATGGACTAATAATTCTG  650

seq1  AAATCGTGACCCCCTAAATCGATCTACCCTCTTTTTGAATGGTTTCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTGACCCCCTAAATCGATCTACCCTCTTTTTGAATGGTTTCCATC  700

seq1  AGATACATGTTACAGAAATCACTAGTGACAAACATCACTACTTTTGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATGTTACAGAAATCACTAGTGACAAACATCACTACTTTTGCTAC  750

seq1  CCTACTA-TTTCCGC-TTTTGTGTGAACATTTGGAGATAGAGTTTTAAAA  798
      ||||||| |||| || ||||||||||||||||||||||||||||||||||
seq2  CCTACTATTTTCTGCTTTTTGTGTGAACATTTGGAGATAGAGTTTTAAAA  800

seq1  TTATTGTATTTGTGCTAGCAAGATGGCTCAGTGAGTATAGGTGTGGGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATTTGTGCTAGCAAGATGGCTCAGTGAGTATAGGTGTGGGCTT  850

seq1  CGAAGCCTGACAACCTGGATTTGATCCCTAGAACCCCCATGTTGGGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCTGACAACCTGGATTTGATCCCTAGAACCCCCATGTTGGGAGAG  900

seq1  GGCTGATGCCCCAAGTTGTCCTCCCACCTTCACACAAGCATAGTAGTATG  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCTGATGCCCCAAGTTGTCCTCTCACCTTCACACAAGCATAGTAGTATG  950

seq1  CACATACACGTATGCATGCACACATGCGCGAGCGCGCGCACACACACACA  998
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACATACACGTATGCATGCACACATGCGCGAGCGCGCGCACACACACACA  999

seq1  CACACACACACACACATCAAATAAACAGAAAACAAAAAC-CTATCAG-AC  1046
      | |||| |||| ||||||||||||||||||||||||||| ||||||| ||
seq2  CTCACATACACTCACATCAAATAAACAGAAAACAAAAACTCTATCAGAAC  1049

seq1  ACATTTA-TCTTAAAAGTATATTTTTCACTCATATTCCAAATGGACAAC-  1094
      ||||||| | ||||| ||||||||||||||||||| | ||| ||||||| 
seq2  ACATTTATTTTTAAAGGTATATTTTTCACTCATATCCAAAAGGGACAACC  1099

seq1  -TAAATACAAG-ACTTGTG-CCTATGTGGCTCTGCCAGCCTCACTGCTGA  1141
        ||||||||| ||||||| |||  ||||||||| ||||||         
seq2  TAAAATACAAGAACTTGTGTCCTTAGTGGCTCTGGCAGCCTT--------  1141

seq1  CTGGCACTGCCATGCCCTCTCTGCTCCCTCAGAAGATCACTCCCACTTCT  1191
                                                        
seq2  --------------------------------------------------  1141

seq1  CCTCTGGCAGTCCTT  1206
                     
seq2  ---------------  1141

seq1: chr10_41123405_41124491
seq2: B6Ng01-156I19.g_68_1145 (reverse)

seq1  TGTG-ACTGAGGGCAGAGCACTCTGCAT-GCTTGATAGCCTTCAGATCCT  48
      |||| | ||||||||||||||||||||| |||||||||||||||   |||
seq2  TGTGAATTGAGGGCAGAGCACTCTGCATAGCTTGATAGCCTTCAATCCCT  50

seq1  GGGCCAGCCTTTCAATGGGCTCCAG-AGAGAGAGGCTTTTGTTGGTCCTT  97
        | ||| |||||||| |||||||| ||| ||| ||||||| ||||||| 
seq2  --GACAG-CTTTCAAT-GGCTCCAGAAGAAAGAAGCTTTTG-TGGTCCT-  94

seq1  GGCAAGCTTGTCAACAGGAGAGGGGACACCTCTGAGATTAGTTGGGACCC  147
       ||||||| |||||||| |||||||||| |||||||||||||||||||| 
seq2  -GCAAGCTAGTCAACAGAAGAGGGGACA-CTCTGAGATTAGTTGGGACC-  141

seq1  AACACACCAGAAAGTAGTCTTCAGGCAATGGTAAGCGCCCACTGACCCTT  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACACACCAGAAAGTAGTCTTCAGGCAATGGTAAGCGCCCACTGACCCTT  190

seq1  CACATTTTCAAATAAGGATGGAGAGGCTACTGGAAAAGGTCTGTGTGTAG  247
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  CACATTTTCAAATAAGGATGAAGAGGCTACTGAAAAAGGTCTGTGTGTAG  240

seq1  ATAACCATTGCCCACAATGCACTTAATTGTCTGCATTGCGGAAATAGTTT  297
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  ATAACCATTGCCCACAATGCACTT-ATTGTCTGCATTGCGGAAATAG-TT  288

seq1  TGTATTCACTTCAAACTCTTCACATTAGGTGATGACCCCAGCTTCCCCCA  347
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTATTCACTTCAAACTCTTCACATTAGATGATGACCCCAGCTTCCCCCA  338

seq1  CTGTGCACTGTGGGGGCAAGGGCAGGGAGGGTGGATTGGCAGCATACCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACTGTGGGGGCAAGGGCAGGGAGGGTGGATTGGCAGCATACCTG  388

seq1  ACTTACTCTCTTAAAACCAACTCAGGAACACTTGCAGACAAAGCCGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCTCTTAAAACCAACTCAGGAACACTTGCAGACAAAGCCGTTTT  438

seq1  TAGCAGCAAAGAAAACCTTAGTAACCCACAGGTTGGCTTCAGCAGCCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAAAGAAAACCTTAGTAACCCACAGGTTGGCTTCAGCAGCCCAG  488

seq1  TAACTGTTTCCATGGATCCTACGGGAAACATTGCCATCTTGTGGAAACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTCCATGGATCCTACGGGAAACATTGCCATCTTGTGGAAACTC  538

seq1  TGCCCCAGAATGTGATTAAAGAGATTTCTCTAAACCAGGTTCCAGATCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGAATGTGATTAAAGAGATTTCTCTAAACCAGGTTCCAGATCGC  588

seq1  TCTAGAATCTCTGCTCTCTTGCCCACTGGCTCTGCCTCTGGGCCTTCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCTCTGCTCTCTTGCCCACTGGCTCTGCCTCTGGGCCTTCTCT  638

seq1  GGCATGTGGGTCTCTTCTATTAAGTTGGGAGCCACAGGAAGGGAAGACCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGGGTCTCTTCTATTAAGTTGGGAGCCACAGGAAGGGAAGACCC  688

seq1  TGGAAAAGCCAGGAGAGTAGATCAACAAAATCACTAGGTGCCCTGGGTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGCCAGGAGAGTAGATCAACAAAATCACTAGGTGCCCTGGGTGA  738

seq1  ACCAGAAGTCAAAAGAGAGTGAAACAGGGTACAGGCACCTGCTCCCAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGTCAAAAGAGAGTGAAACAGGGTACAGGCACCTGCTCCCAACT  788

seq1  GCACCTGCTCTCAGCTGCACCTGCTCTCAGACTCACCTGCTCTCTAGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGCTCTCAGCTGCACCTGCTCTCAGACTCACCTGCTCTCTAGCTG  838

seq1  CACCTGCTCTCTCTCAGCTGCACCTGCTCTTTAGCTGCACCTGCTCTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCTCTCTCAGCTGCACCTGCTCTTTAGCTGCACCTGCTCTTGA  888

seq1  GCTGCACCTGCTCTCATTTGTACCTGCTCTCAGTTGCATCTTTTTTCCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTGCTCTCATTTGTACCTGCTCTCAGTTGCATCTTTTTTCCAA  938

seq1  AAATTGATTACAATGCACTTACCTATGATTTGCCTGTTATTAACTCAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTACAATGCACTTACCTATGATTTGCCTGTTATTAACTCAATT  988

seq1  TGAGACTTACTAAACATTTTAAAATCTGTAGCTATCTTTCTCCACAGAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTACTAAACATTTTAAAATCTGTAGCTATCTTTCTCCACAGAGT  1038

seq1  TGTTTAGGTCTACCCACATATCTCATATGTCCCTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGTCTACCCACATATCTCATATGTCCCTGAATTC  1078