BAC Information

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BAC

Clone NameB6Ng01-156K04
Chromosome10 (Build37)
Map Location 9,520,360 - 9,521,191
singlet/doubletsinglet
Overlap geneStxbp5
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156K04.g
ACCDH951087
length855
definitionDH951087|Mus musculus domesticus DNA, BAC clone: B6Ng01-156K04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacaactggttcttagtgggtgactgattcac
cacctgagcctaaaatcagcgactctctgagttttgaggctcctttggtg
gatacatgctgtacaccgtaagagacatgataagccaattaggtgattct
tctggttgttctgacatgaaataatatttaacagtccatttataatgcat
tatgaggttagacttgatatggcttattagtcttggaaaggtatcaacta
atttttttattgtgtgtgcccgatgctcacacatacaggcaaagaggaca
agttgccggagtactttcctgctatcatccagaaccaaacctccgtcatc
atcacctttaattgctgggccatctcagagctgaggaaggcataaatctt
agactgattttaatgctctgtaacaaagaaggtatccaaaattcactgaa
taaatgaataagcaagaggttgaatcatatatatgataaatcacagcatc
tctacattcaacggacctaaatgaatgcattaggaacatcactgtgaaag
gttagtttcagatgaatatctggtaaatctgatgtgactgtaggaatcca
tacattaaaaaccactcagcagacatgttttaaacatccaaacctcacaa
ataaagtataacgtcatgctcaacttgcactgactaagtctatgatacta
gacaccggggaaggaaggagtttatgccaatctcagactagagaaaatat
agatggaacactcaccatgcatgtatcagcgaattccatgtgaaacaaaa
tatgtaagcagaagaccaatttatttgtatgtgaaattatgtatatttac
ccatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9520360_9521191
seq2: B6Ng01-156K04.g_88_916

seq1  ACAACTGGTTCTTAGTGGGTGACTGATTCACCACCTAAGCCTAAGCAGAG  50
      |||||||||||||||||||||||||||||||||||| |||||||    ||
seq2  ACAACTGGTTCTTAGTGGGTGACTGATTCACCACCTGAGCCTAAAATCAG  50

seq1  CGACTCTCTGAGTTTTGAGGCTCATTTGGTGGATAGATGCTGTACACAGT  100
      ||||||||||||||||||||||| ||||||||||| ||||||||||| ||
seq2  CGACTCTCTGAGTTTTGAGGCTCCTTTGGTGGATACATGCTGTACACCGT  100

seq1  AGGAGACATGGTAAGCCAATTAGAACATTCTTCTGGTTGTTCTGACATGA  150
      | |||||||| ||||||||||||   ||||||||||||||||||||||||
seq2  AAGAGACATGATAAGCCAATTAGGTGATTCTTCTGGTTGTTCTGACATGA  150

seq1  AATAATATTTTACAGTAGATTTAGAATACATTATGAGGTTAGACTTGATA  200
      |||||||||| |||||  ||||| ||| ||||||||||||||||||||||
seq2  AATAATATTTAACAGTCCATTTATAATGCATTATGAGGTTAGACTTGATA  200

seq1  TGGCTTATTAGTCTTGGAAAGGTATCAACTAATTTTTTTATTGTGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATTAGTCTTGGAAAGGTATCAACTAATTTTTTTATTGTGTGTGC  250

seq1  AAGATGCTCACACATACAGGCAAAGAGGACAAGTTGCAGGAGTTCTTTCC  300
        ||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CCGATGCTCACACATACAGGCAAAGAGGACAAGTTGCCGGAGTACTTTCC  300

seq1  TGCTATCATCCAGAGCCAAACCTAGGTCATCAGCACCTTTAATTGCTGGG  350
      |||||||||||||| ||||||||  ||||||| |||||||||||||||||
seq2  TGCTATCATCCAGAACCAAACCTCCGTCATCATCACCTTTAATTGCTGGG  350

seq1  CCATCTCAGCAGCTGAGGAAGGCATAAATCTTAGACTGATTTTAATGCTC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAG-AGCTGAGGAAGGCATAAATCTTAGACTGATTTTAATGCTC  399

seq1  TGTAACAAAGAAGGTATCCAAAATTCACTGAATAAATGAATAAGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAAGAAGGTATCCAAAATTCACTGAATAAATGAATAAGCAAGAG  449

seq1  GTTGAATCAAAGAGATGAGAAATCACAGCAACTCTACATTCAACGGACCT  500
      ||||||||| | | |||| ||||||||||| |||||||||||||||||||
seq2  GTTGAATCATATATATGATAAATCACAGCATCTCTACATTCAACGGACCT  499

seq1  AAATGAATGCATTAGGAACATCACTGTGAAAGGTTAGTTTCAGAGGAATA  550
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATGAATGCATTAGGAACATCACTGTGAAAGGTTAGTTTCAGATGAATA  549

seq1  TCTGGTAAATCTGAGGTGACTGTAGGAATCCATACATTAAAAACCACTCA  600
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAATCTGATGTGACTGTAGGAATCCATACATTAAAAACCACTCA  599

seq1  GCAGACAGGTTTTAAACAACCAAACCTCACAAATAAAGTATAACGTCATG  650
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGACATGTTTTAAACATCCAAACCTCACAAATAAAGTATAACGTCATG  649

seq1  CTAAACTTGTACTGACTAAGTCTATGATACTAGAAAAGGGGGAAGGAAGG  700
      || |||||| |||||||||||||||||||||||| |  ||||||||||||
seq2  CTCAACTTGCACTGACTAAGTCTATGATACTAGACACCGGGGAAGGAAGG  699

seq1  AGTTTATGGCAATCACAGACTAAGGAAAATATAGATGCAACACTCACCAT  750
      |||||||| ||||| |||||||  ||||||||||||| ||||||||||||
seq2  AGTTTATGCCAATCTCAGACTAGAGAAAATATAGATGGAACACTCACCAT  749

seq1  GCATGTATCAGCAAACTTCATGTGAAACAAAAATATGTAAGCAAGAAGAC  800
      |||||||||||| || | |||||||||| ||||||||||||| |||||||
seq2  GCATGTATCAGCGAATTCCATGTGAAAC-AAAATATGTAAGC-AGAAGAC  797

seq1  CAATTTATTTGTATGTGTAAGTATGTATATTT  832
      ||||||||||||||||| || |||||||||||
seq2  CAATTTATTTGTATGTGAAATTATGTATATTT  829