BAC Information

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BAC

Clone NameB6Ng01-156P23
Chromosome10 (Build37)
Map Location 31,560,611 - 31,561,729
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneHey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156P23.bB6Ng01-156P23.g
ACCDH951348DH951349
length1,1741,100
definitionDH951348|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P23, 5' end.DH951349|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctttgtacccatttttaatgaggttatttgaattt
ctggagtccagcttcttgagctctttgtatatattgggtatttgtcccct
atcagatttaagtttagtaaaagtcctttcccaaactgttggtggccttt
ttgtcatattgacagtatcttttgccttacagaagctttgcaattttatg
aggtcccatttgttgattctagattttaaaacacaagccattgctgttct
gttcaggaatttttcccttgtgctgatattttcgaggctttcccccactt
tctcctctataaatttcagtgtctctggttttatgtggaggtctttgatc
cacttagacttgagcttggtacaaggagataagaatggatcaatttgcat
tcttctacatattaactgccacttacgcaagcaccatttgttgaaagggc
tgtctttttaccacaggatggttttaactcccttgtcaaagatcaagtga
ccataggtgtgtgggttcgtttctgggtcttcaattctattccattgatc
tacctgtctgtccctgtaccactaccatgcagtttttatcacaattgctc
tgtagtacagctttaggtcaggcatggtgattccactaaatgttcttgta
ttgttgagtatagtttttgctatcctaggttttttgttattccagatgaa
ttggcaaattgccctttctaacttagtgaggaattgagttgaaattttga
tggggattgcattgaatctgtcgattgtttttggcagaatagccatttta
ttatattaatcctgccaatccatgagcatgggagatctttccatcttctg
agatctttcctcaatttctttcttcagagtcttgaagttcttgtatacag
atcgttcacatccttagttaaagtcacaccaaggtatttatattttgtga
ctattgtgaagggtatgtttccctaattcttctcatcctgttacctttgt
gtaagaaggccaatgaatttgtgagtatttatatcagctactgcactcga
agctgttatcaggtttagagttcttctgggggaaatttaggtcatcaaat
aatcaactgccaaagaattttgaatctgtgcttcttaatttggatcccac
tggacttcctctggtgcgcagaat
gaattccttgacagagaatgtacaaatagacccagagtcaaagactggcc
aagtggtatttgaataagtgtttaacagaccttctaggaactacttggaa
acagtctgaattggggagcttaccattttctactacaaacactttgcctg
tggctaatttgaagcaagttctatgatgtcaactgacattaataaaattt
agaaattggctctcatggggtggtttgagctagtttcactattacaacac
gtccatgttcagaatatatgtggaagaagtagctccatcacaaaagacaa
gcatgtgactacaaaggcatgacactgaattctcatagacaaattcataa
gaagaagaaagtttagggttttttttatcatgtatgtgcacttatgtgca
catctacttttaaagttacaactatagtccggggaaaataaattttttgc
ttctcctaacatgtcattactttcactttattaatattaacaaaaccatt
attttcctttttttgagattgagttttatgttccttggtctggtctcacc
ttcactatatagctgaggatgactatgaacttctaatcttcctgccttca
cttctcaagaactgggattagagatgtgtaactccatgcagggtttatac
tgtgttgggaatcaaacctatggattcatgaagcaacacaaacatagtgc
cagatgagctaaaattctagcctaacaaaagtattactttaagtaaataa
actttatgaggctattattatgggctaaaaggcattgcagaaattaattt
atttgatttcctctcaacaatccattataattatactaactttatatgtg
aggagtaagaaattgacatgtatatgcatatcactcttggtatttggcag
tcaatatttagagaaagggttcttagactcaaaatctattgcctaaagaa
atagagagcaaactaacaggtggatgaccacagtgcagtgcagcctggtt
tcactgatatgtacagcagggactcttgtgttaagaatcttatcttgcaa
tgagcacaagtcagctttcatgtcattacatgttaaatcttgcctataca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31560611_31561729
seq2: B6Ng01-156P23.g_69_1168

seq1  GAATTCCTTGACAGAGAATGTACAAATAGACCCAGAGTCAAAGACTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACAGAGAATGTACAAATAGACCCAGAGTCAAAGACTGGCC  50

seq1  AAGTGGTATTTGAATAAGTGTTTAACAGACCTTCTAGGAACTACTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATTTGAATAAGTGTTTAACAGACCTTCTAGGAACTACTTGGAA  100

seq1  ACAGTCTGAATTGGGGAGCTTACCATTTTCTACTACAAACACTTTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGAATTGGGGAGCTTACCATTTTCTACTACAAACACTTTGCCTG  150

seq1  TGGCTAATTTGAAGCAAGTTCTATGATGTCAACTGACATTAATAAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATTTGAAGCAAGTTCTATGATGTCAACTGACATTAATAAAATTT  200

seq1  AGAAATTGGCTCTCATGGGGTGGTTTGAGCTAGTTTCACTATTACAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGGCTCTCATGGGGTGGTTTGAGCTAGTTTCACTATTACAACAC  250

seq1  GTCCATGTTCAGAATATATGTGGAAGAAGTAGCTCCATCACAAAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTTCAGAATATATGTGGAAGAAGTAGCTCCATCACAAAAGACAA  300

seq1  GCATGTGACTACAAAGGCATGACACTGAATTCTCATAGACAAATTCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACTACAAAGGCATGACACTGAATTCTCATAGACAAATTCATAA  350

seq1  GAAGAAGAAAGTTTAGGGTTTTTTTTATCATGTATGTGCACTTATGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAGTTTAGGGTTTTTTTTATCATGTATGTGCACTTATGTGCA  400

seq1  CATCTACTTTTAAAGTTACAACTATAGTCCGGGGAAAATAAATTTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTTTTAAAGTTACAACTATAGTCCGGGGAAAATAAATTTTTTGC  450

seq1  TTCTCCTAACATGTCATTACTTTCACTTTATTAATATTAACAAAACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAACATGTCATTACTTTCACTTTATTAATATTAACAAAACCATT  500

seq1  ATTTTCCTTTTTTTGAGATTGAGTTTTATGTTCCTTGGTCTGGTCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTTTTTGAGATTGAGTTTTATGTTCCTTGGTCTGGTCTCACC  550

seq1  TTCACTATATAGCTGAGGATGACTATGAACTTCTAATCTTCCTGCCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATATAGCTGAGGATGACTATGAACTTCTAATCTTCCTGCCTTCA  600

seq1  CTTCTCAAGAACTGGGATTAGAGATGTGTAACTCCATGCAGGGTTTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGAACTGGGATTAGAGATGTGTAACTCCATGCAGGGTTTATAC  650

seq1  TGTGTTGGGAATCAAACCTATGGATTCATGAAGCAACACAAACATAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGGAATCAAACCTATGGATTCATGAAGCAACACAAACATAGTGC  700

seq1  CAGATGAGCTAAAATTCTAGCCTAACAAAAGTATTACTTTAAGTAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGCTAAAATTCTAGCCTAACAAAAGTATTACTTTAAGTAAATAA  750

seq1  ACTTTATGAGGCTATTATTATGGGCTAAAAGGCATTGCAGAAATTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGAGGCTATTATTATGGGCTAAAAGGCATTGCAGAAATTAATTT  800

seq1  ATTTGATTTCCTCTCAACAATCCATTATAATTATACTAACTTTATATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTCCTCTCAACAATCCATTATAATTATACTAACTTTATATGTG  850

seq1  AGGAGTAAGAAATTGACATGTTATATGCATATCACTCTTGGTATTTGGCA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGAGTAAGAAATTGACATG-TATATGCATATCACTCTTGGTATTTGGCA  899

seq1  GTCAATATTTAGAGAAAGGGTTCTTAGACTCAAAATCTATTGCCTAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTTAGAGAAAGGGTTCTTAGACTCAAAATCTATTGCCTAAAGA  949

seq1  AATAGGAGAGCAAACTAACAGGTGGATTGACCACAGTTGCAAGTGGCAGC  1000
      |||| ||||||||||||||||||||| ||||||||| ||| ||| |||||
seq2  AATA-GAGAGCAAACTAACAGGTGGA-TGACCACAG-TGC-AGT-GCAGC  994

seq1  CTGGTTTCACTGAATATGTACAGCAAGGGAACTCTTGTGTTATAGATCTT  1050
      |||||||||||| ||||||||||||  || ||||||||||||   |||||
seq2  CTGGTTTCACTG-ATATGTACAGCA--GGGACTCTTGTGTTAAGAATCTT  1041

seq1  ATCCTTTGCAAATGAGGCACAAATTCAGCTTTTTCATGTCAATTACATGT  1100
      |||  |||| ||||| |||| || |||||  ||||||||| |||||||||
seq2  ATC--TTGC-AATGA-GCAC-AAGTCAGC--TTTCATGTC-ATTACATGT  1083

seq1  TTAAAATCTTGCTTATACA  1119
      |  ||||||||| ||||||
seq2  T--AAATCTTGCCTATACA  1100