BAC Information

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BAC

Clone NameB6Ng01-157A04
Chromosome10 (Build37)
Map Location 114,759,868 - 114,893,288
singlet/doubletdoublet
Overlap geneTmem19, Thap2, Ccdc131, Lgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A04.bB6Ng01-157A04.g
ACCDH951358DH951359
length1,0821,213
definitionDH951358|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A04, 5' end.DH951359|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,892,190 - 114,893,288)(114,759,868 - 114,761,113)
sequence
gaattcattttctcatgaaactaattctaaatcatgttcgcctcgtcccc
tacaggggtatctgtcaggaaggtgaaatgagatcacgtctgtaaagcct
tggctttccttgccgtaagacgttacttaaacagaaagcaatgcatctcc
acacctgtggggatgaagaggcgccttgggcagcgccccctccactccct
gccaaccttgcgagtttgcacaaagtccaacagaaaggcttctcattctt
agggcctgaatgacttgttgattccaacgtgtaattcagcagccagtctg
ctaagtttccttaccctgtccgcatacccatcagttgatggagctaacag
ccttggtgtttgtttgtctgtttgtttgtttgtttgttttaggtcacaca
acacaaatcgctctcttcctttggtttcagctcttcctgccccatcaact
ctaacctcttctgcttttactccttaaagctttaaaatttaaaaacatag
agtccattatctttcagacactccatcagcccctgggattacataataac
actaatgtccttcagggagtttattttcaagactggagattctcagccac
gagccacgtgttagaatgacacagaaggttttgacaaattactgacacca
gagcggggggagggggccaagttagccaagggcctggtgtgtaagcatga
cgatctgatcagagttcagacctccaacatccacattaaacaacaacaac
aataatgaagtgggatgtggcagctagcaccagtaatcttagtgttgtga
gacccaaataactagtgtttaataaacagccagcccagctgaatgggcga
gttctgggttcgtgagagacccttgtctcagagataaagaagggaagtga
ctgggcagaccaaacctatctatgacagctatgggtaaattcttggcatt
tatatttctacttagtctcttagcatacacagtgctcaaaggcgatcact
ccatcatatttccatacttttcacgtatctttgagatcatgtgtacacca
tacagagaggtactgattccagtctcaccaaa
gaattcctcccatgaagggagtactaagatctggaagtgtaagttgaata
aacccttccctccccaacttggttttcggtcacagtgtttcattgcagcg
atagaaatctgaactatgacacagggctagaaccacatctaacaaatgtt
tggacctatgagtcctgcaatgcagtgcttcatttgtacgcactatttaa
agacaatgagtggaggaccagtgtataaaagatgtgtattggacatgaga
tttcagaaactcgattgggcatacgggattttgacagataaaaatttctt
aaagcattccccattagatgcgcctagcaagggtgattaacaacaggcgg
cagcagctgcaaggaacacgaactccccataggaaacattgtttttcctt
tctttgtgcacctactcagcaacttgtgttgaccttgagactatttttct
ccccgtgtaggaggcaacaggtaaagaattagaacaaggtgtagtagagg
tgttcaatgtcaacccagaattcacatcctttggtcatccaaacagaatc
aagcacctgtctgtatctttcctttctggagcaagctcagaacctacagt
ttctagtctttttaaatctctgaggctcttcccggctcactagcaaaaat
aaataacctgcaagtgtgggcagtgaccacgagagggcaccagcagctcg
atgaaatttaccaggtaagggcaaatccttccaagactgttagctgtgtt
cttcaataaaaataaggttaccggcaaagattctcccctgagttttaaaa
acaggaatattctaagagacatggggaacgtaagaagggagaaactacag
ttcataaagtgacggatgttcactgcaaatgttccaagaaacttaaaact
attttctttttcgagaaagaattgtattcatgttagaattctcagatctt
gccatttctaatgaatatgtcaggagctaaaagagagacaagaagctatc
aaatgttgtttaataactgcttgtacttcagttcaagaccccatgacttg
gcttcttgacactgccttacaacacgacatcacaacactacactagtcca
cccaacccacggaataaaataattgattttttaaataccgagcatcactc
tggtatacttatgtatatagaaccgtttgaagtgcctaatcgtaccaaat
tattggataatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114892190_114893288
seq2: B6Ng01-157A04.b_45_1126 (reverse)

seq1  TTTGTGTGAGACTTGGGAATCAGTATTTTCTCTCTGTATGTGTGTACACA  50
      |||| ||||||||  ||||||||||    ||||||||||| |||||||||
seq2  TTTG-GTGAGACT--GGAATCAGTA---CCTCTCTGTATG-GTGTACACA  43

seq1  TGATTCTCAAAAGAATACGTGAAAAGTATGGAAATATTGATGGAGTGATC  100
      ||| |||||||   |||||||||||||||||||||| |||||||||||||
seq2  TGA-TCTCAAA--GATACGTGAAAAGTATGGAAATA-TGATGGAGTGATC  89

seq1  GCCTTTGAGCACTGTGTATGCTAAGGAGGACCTAAGTAGAAATATAAATG  150
      |||||||||||||||||||||||| |||   |||||||||||||||||||
seq2  GCCTTTGAGCACTGTGTATGCTAA-GAG--ACTAAGTAGAAATATAAATG  136

seq1  CCAAGAATTTACCCATAGCTGTCATAGATAGGTTTTGGTCTGCCCAGTCA  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAAGAATTTACCCATAGCTGTCATAGATAGG-TTTGGTCTGCCCAGTCA  185

seq1  CTTCCCTTCTTTATCTCCTGAGACAAGGGTCTCTCACCGAACCCAGAACT  250
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CTTCCCTTCTTTATCT-CTGAGACAAGGGTCTCTCA-CGAACCCAGAACT  233

seq1  CGCCCATTCAGCTGGGCTGGCTGTTTATTAAACACTAGTTATTTGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATTCAGCTGGGCTGGCTGTTTATTAAACACTAGTTATTTGGGTCT  283

seq1  CACAACACTAAGATTACTGGTGCTAGCTGCCACATCCCACTTCATTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTAAGATTACTGGTGCTAGCTGCCACATCCCACTTCATTATTG  333

seq1  TTGTTGTTGTTTAATGTGGATGTTGGAGGTCTGAACTCTGATCAGATCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTAATGTGGATGTTGGAGGTCTGAACTCTGATCAGATCGT  383

seq1  CATGCTTACACACCAGGCCCTTGGCTAACTTGGCCCCCTCCCCCCGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTACACACCAGGCCCTTGGCTAACTTGGCCCCCTCCCCCCGCTCT  433

seq1  GGTGTCAGTAATTTGTCAAAACCTTCTGTGTCATTCTAACACGTGGCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGTAATTTGTCAAAACCTTCTGTGTCATTCTAACACGTGGCTCG  483

seq1  TGGCTGAGAATCTCCAGTCTTGAAAATAAACTCCCTGAAGGACATTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGAATCTCCAGTCTTGAAAATAAACTCCCTGAAGGACATTAGTG  533

seq1  TTATTATGTAATCCCAGGGGCTGATGGAGTGTCTGAAAGATAATGGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTAATCCCAGGGGCTGATGGAGTGTCTGAAAGATAATGGACTC  583

seq1  TATGTTTTTAAATTTTAAAGCTTTAAGGAGTAAAAGCAGAAGAGGTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTAAATTTTAAAGCTTTAAGGAGTAAAAGCAGAAGAGGTTAGA  633

seq1  GTTGATGGGGCAGGAAGAGCTGAAACCAAAGGAAGAGAGCGATTTGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGGGCAGGAAGAGCTGAAACCAAAGGAAGAGAGCGATTTGTGTT  683

seq1  GTGTGACCTAAAACAAACAAACAAACAAACAGACAAACAAACACCAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCTAAAACAAACAAACAAACAAACAGACAAACAAACACCAAGGC  733

seq1  TGTTAGCTCCATCAACTGATGGGTATGCGGACAGGGTAAGGAAACTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTCCATCAACTGATGGGTATGCGGACAGGGTAAGGAAACTTAGC  783

seq1  AGACTGGCTGCTGAATTACACGTTGGAATCAACAAGTCATTCAGGCCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTGCTGAATTACACGTTGGAATCAACAAGTCATTCAGGCCCTA  833

seq1  AGAATGAGAAGCCTTTCTGTTGGACTTTGTGCAAACTCGCAAGGTTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAAGCCTTTCTGTTGGACTTTGTGCAAACTCGCAAGGTTGGCA  883

seq1  GGGAGTGGAGGGGGCGCTGCCCAAGGCGCCTCTTCATCCCCACAGGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGAGGGGGCGCTGCCCAAGGCGCCTCTTCATCCCCACAGGTGTG  933

seq1  GAGATGCATTGCTTTCTGTTTAAGTAACGTCTTACGGCAAGGAAAGCCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCATTGCTTTCTGTTTAAGTAACGTCTTACGGCAAGGAAAGCCAA  983

seq1  GGCTTTACAGACGTGATCTCATTTCACCTTCCTGACAGATACCCCTGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACAGACGTGATCTCATTTCACCTTCCTGACAGATACCCCTGTAG  1033

seq1  GGGACGAGGCGAACATGATTTAGAATTAGTTTCATGAGAAAATGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGAGGCGAACATGATTTAGAATTAGTTTCATGAGAAAATGAATTC  1082

seq1: chr10_114759868_114761113
seq2: B6Ng01-157A04.g_69_1281

seq1  GAATTCCTCCCATGAAGGGAGTACTAAGATCTGGAAGTGTAAGTTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCATGAAGGGAGTACTAAGATCTGGAAGTGTAAGTTGAATA  50

seq1  AACCCTTCCCTCCCCAACTTGGTTTTCGGTCACAGTGTTTCATTGCAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCCCTCCCCAACTTGGTTTTCGGTCACAGTGTTTCATTGCAGCG  100

seq1  ATAGAAATCTGAACTATGACACAGGGCTAGAACCACATCTAACAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCTGAACTATGACACAGGGCTAGAACCACATCTAACAAATGTT  150

seq1  TGGACCTATGAGTCCTGCAATGCAGTGCTTCATTTGTACGCACTATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTATGAGTCCTGCAATGCAGTGCTTCATTTGTACGCACTATTTAA  200

seq1  AGACAATGAGTGGAGGACCAGTGTATAAAAGATGTGTATTGGACATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAGTGGAGGACCAGTGTATAAAAGATGTGTATTGGACATGAGA  250

seq1  TTTCAGAAACTCGATTGGGCATACGGGATTTTGACAGATAAAAATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAACTCGATTGGGCATACGGGATTTTGACAGATAAAAATTTCTT  300

seq1  AAAGCATTCCCCATTAGATGCGCCTAGCAAGGGTGATTAACAACAGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCCCCATTAGATGCGCCTAGCAAGGGTGATTAACAACAGGCGG  350

seq1  CAGCAGCTGCAAGGAACACGAACTCCCCATAGGAAACATTGTTTTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGCAAGGAACACGAACTCCCCATAGGAAACATTGTTTTTCCTT  400

seq1  TCTTTGTGCACCTACTCAGCAACTTGTGTTGACCTTGAGACTATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGCACCTACTCAGCAACTTGTGTTGACCTTGAGACTATTTTTCT  450

seq1  CCCCGTGTAGGAGGCAACAGGTAAAGAATTAGAACAAGGTGTAGTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGTAGGAGGCAACAGGTAAAGAATTAGAACAAGGTGTAGTAGAGG  500

seq1  TGTTCAATGTCAACCCAGAATTCACATCCTTTGGTCATCCAAACAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATGTCAACCCAGAATTCACATCCTTTGGTCATCCAAACAGAATC  550

seq1  AAGCACCTGTCTGTATCTTTCCTTTCTGGAGCAAGCTCAGAACCTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTGTCTGTATCTTTCCTTTCTGGAGCAAGCTCAGAACCTACAGT  600

seq1  TTCTAGTCTTTTTAAATCTCTGAGGCTCTTCCCGGCTCACTAGCAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTTTTTAAATCTCTGAGGCTCTTCCCGGCTCACTAGCAAAAAT  650

seq1  AAATAACCTGCAAGTGTGGGCAGTGACCACGAGAGGGCACCAGCAGCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCTGCAAGTGTGGGCAGTGACCACGAGAGGGCACCAGCAGCTCG  700

seq1  ATGAAATTTACCAGGTAAGGGCAAATCCTTCCAAGACTGTTAGCTGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTACCAGGTAAGGGCAAATCCTTCCAAGACTGTTAGCTGTGTT  750

seq1  CTTCAATAAAAATAAGGTTACCGGCAAAGATTCTCCCCTGAGTTTTAAAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCAATAAAAATAAGGTTACCGGCAAAGATTCTCCCCTGAGTTTT-AAA  799

seq1  AACAGGAATATTCTAAGAGACATGGGGAACGTAAGAAGGGAGAAACTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATATTCTAAGAGACATGGGGAACGTAAGAAGGGAGAAACTACA  849

seq1  GTTCATAAGGTGACGGATGTTCACTGCAAATGTTCCAAGAAACTTAAAAC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAGTGACGGATGTTCACTGCAAATGTTCCAAGAAACTTAAAAC  899

seq1  TA-TTTCTTCTCGAAGAAAGAATTGTATTCAATGTTAGAATTCTCAGATC  949
      || |||||| |   |||||||||||||||| |||||||||||||||||||
seq2  TATTTTCTTTTTCGAGAAAGAATTGTATTC-ATGTTAGAATTCTCAGATC  948

seq1  TTGCCAATTTCTAATGAAATATGTCAGGAGCTAAAAAGAGAAGACAAAGA  999
      ||||| |||||||||| ||||||||||||||| ||||||| ||||||   
seq2  TTGCC-ATTTCTAATG-AATATGTCAGGAGCT-AAAAGAG-AGACAA--G  992

seq1  AAGCTATCAAAATGTTTGTTTTAAATAACTGCTTGTAACTCCAGTTCCAA  1049
      |||||||| ||||| ||||||  ||||||||||||| ||| ||||| |||
seq2  AAGCTATC-AAATG-TTGTTT--AATAACTGCTTGT-ACTTCAGTT-CAA  1036

seq1  GACACCCATTGACCTTGGCTTCCTTGGACACCTGCGCTTACAAACACACA  1099
      ||| |||| ||| |||||||||  | |||| |||| ||||||     |||
seq2  GAC-CCCA-TGA-CTTGGCTTC--TTGACA-CTGC-CTTACA-----ACA  1074

seq1  CACACACACACACACACACACACACACACACACAAACACACAGAATAAAA  1149
      |  |||  |||| ||||  ||||     ||| | ||| ||| ||||||||
seq2  C-GACA-TCACA-ACAC-TACACTAGTCCAC-CCAACCCACGGAATAAAA  1119

seq1  TAAATTGATTTTTAAATAACCAGAGCATCAAAACTATCTGGT-TA--TAT  1196
      | ||||||||||| ||  ||| ||||||||      |||||| ||  |||
seq2  T-AATTGATTTTTTAAATACC-GAGCATCA-----CTCTGGTATACTTAT  1162

seq1  -TAGATAGAAAC-ATTGGATTGCCTATTCTGTAACCAAATTATTGG-TAA  1243
       || |||||| |  ||| | |||||| || || ||||||||||||| |||
seq2  GTATATAGAACCGTTTGAAGTGCCTAATC-GT-ACCAAATTATTGGATAA  1210

seq1  TAG  1246
      |||
seq2  TAG  1213