BAC Information

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BAC

Clone NameB6Ng01-157E19
Chromosome10 (Build37)
Map Location 12,609,801 - 12,809,051
singlet/doubletdoublet
Overlap geneStx11, Sf3b5
Upstream geneUtrn, LOC665172
Downstream genePlagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157E19.bB6Ng01-157E19.g
ACCDH951573DH951574
length9351,063
definitionDH951573|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E19, 5' end.DH951574|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,609,801 - 12,610,741)(12,807,965 - 12,809,051)
sequence
gaattcccctcacccccttctgtttttctgagacaggttatctctgtgta
gccctggctgtcctggaactcactctgtagaccaggctggcctcaaactc
agagatctgcccgcctctgcctcccaagtgctgggattaaaggtgtgcgc
caccactgtcctaccgctaaaccttaacgtcctctccttttttgtttttc
ttagtgtgtgtggaagtgagtgttgccaagatggctttgaactcattctg
tagccaacacaagtcttcagctaccagttcttctgcctcagcccccttat
aactgggatgacaggtccatgccaccaaatccagtcattgctgattttaa
aatgtgaaaaaaaaagtataaaattgttgattattacaccgtgtcattgg
gtcataactgtgtcttctttatttataaaggtagcatcgaggtgtgttct
tcaagctggtagaagcaagaactgtaaattaggcaatgtttatcttgggg
tggctgtggggtgagtaatatttaagaagtggatgagtaatttacagacc
atcagattcatccatttaaagtattcagcttagtggctgttactaaatat
acagagccgtgaaaacatttccacaatccagtattaggacatttctatca
atacaaattgatccttcatgctctgtcctcctgcctccagctccaggcaa
ccactgatccactttctgtctacacagactgcctgctttctggcatttca
tttaagtggagtcatatagaatcttcacaccattgtccatgtttactgtt
gtctgacttttttttttaagtcatttattttatgtgtatggatattttgc
ctgtaggtgtctttatgcatcacatgcatgcagtgccacagaggcagaga
ggctattgggtccctgggacctggattataactat
gaattctttaggtttcaaggcatggaggcctggaaggaagcgtgcacatg
gaaacagctaagattaggaatacagcttgtttaggcaactcagccctcgc
tggtaaagcccagactcctcgactgaaccaggccctccccgtgaactcgg
actggagttgtcagcagaatgtaggaccccaggaggtggactgaatagca
gaattaagtgttccagttcctggacacttcataaagatggtcctgactga
cttccaatgtggcagatttttgagacttctcaaggcttagactaatagtt
tttttcaacgtgtctccaaggggcaggaagatgggatggatataagcata
ttgtacacacatgacatttgaatacatcttagctctgctatcaattctca
aattggacactgtaagaatgccgtttgggacaggttatgagaatctgtaa
tcccagcactcagaaggcaaaaacaggagggtggaaaagttcaaggccga
tctatacttgagacagccacagtgagaccctgtttgaaaaaagaaaagaa
aaataagagaagaggtttttttgttttgtttttttattctttccttggtt
attttatatgctgttttctttcccttgggtggtctaattttgactttctc
atgcttccctaaaatatgcttatacaggaatctctcattaatgataagtc
ataggaaacccctttttttctgttaagctattttcagagttttttctaaa
tgtgaacgggtttccctgttagctgtgtcagctaagctttccctcagaaa
cacacatccccaaagggttttaggacacaggttgtaaataaatcctcaca
ggtagaaaccagggaagagatggtgaatcactaagatgggtgggttgggt
actgcacagctcctgccggatgcttctgtgctacatgctgctagagtgtc
atcaaatctatatgtaaaaaataataaactgaaacaagcacagctgacat
tttctcaggagctctctcagtttgaacctccacagattggaaagcactct
cgtgtaactgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12609801_12610741
seq2: B6Ng01-157E19.b_45_979

seq1  GAATTCCCCTCACCCCCTTCTGTTTTTCTGAGACAGGTTATCTCTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCACCCCCTTCTGTTTTTCTGAGACAGGTTATCTCTGTGTA  50

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  100

seq1  AGAGATCTGCCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGCCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGC  150

seq1  CACCACTGTCCTACCGCTAAACCTTAACGTCCTCTCCTTTTTTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGTCCTACCGCTAAACCTTAACGTCCTCTCCTTTTTTGTTTTTC  200

seq1  TTAGTGTGTGTGGAAGTGAGTGTTGCCAAGATGGCTTTGAACTCATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTGTGGAAGTGAGTGTTGCCAAGATGGCTTTGAACTCATTCTG  250

seq1  TAGCCAACACAAGTCTTCAGCTACCAGTTCTTCTGCCTCAGCCCCCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACACAAGTCTTCAGCTACCAGTTCTTCTGCCTCAGCCCCCTTAT  300

seq1  AACTGGGATGACAGGTCCATGCCACCAAATCCAGTCATTGCTGATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGATGACAGGTCCATGCCACCAAATCCAGTCATTGCTGATTTTAA  350

seq1  AATGTGAAAAAAAAAGTATAAAATTGTTGATTATTACACCGTGTCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAAAAAAAAGTATAAAATTGTTGATTATTACACCGTGTCATTGG  400

seq1  GTCATAACTGTGTCTTCTTTATTTATAAAGGTAGCATCGAGGTGTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACTGTGTCTTCTTTATTTATAAAGGTAGCATCGAGGTGTGTTCT  450

seq1  TCAAGCTGGTAGAAGCAAGAACTGTAAATTAGGCAATGTTTATCTTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGTAGAAGCAAGAACTGTAAATTAGGCAATGTTTATCTTGGGG  500

seq1  TGGCTGTGGGGTGAGTAATATTTAAGAAGTGGATGAGTAATTTACAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGGGTGAGTAATATTTAAGAAGTGGATGAGTAATTTACAGACC  550

seq1  ATCAGATTCATCCATTTAAAGTATTCAGCTTAGTGGCTGTTACTAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTCATCCATTTAAAGTATTCAGCTTAGTGGCTGTTACTAAATAT  600

seq1  ACAGAGCCGTGAAAACATTTCCACAATCCAGTATTAGGACATTTCTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCGTGAAAACATTTCCACAATCCAGTATTAGGACATTTCTATCA  650

seq1  ATACAAATTGATCCTTCATGCTCTGTCCTCCTGCCTCCAGCTCCAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATTGATCCTTCATGCTCTGTCCTCCTGCCTCCAGCTCCAGGCAA  700

seq1  CCACTGATCCACTTTCTGTCTACACAGACTGCCTGCTTTCTGGCATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATCCACTTTCTGTCTACACAGACTGCCTGCTTTCTGGCATTTCA  750

seq1  TTTAAGTGGAGTCATATAGAATCTTCACACCATTGTCCATGTTTACTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGGAGTCATATAGAATCTTCACACCATTGTCCATGTTTACTGTT  800

seq1  GTCTGACTTTTTTTTTTAAGTCATTTTATTTTATGTGTATGGATATTTTG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCTGACTTTTTTTTTTAAGTCA-TTTATTTTATGTGTATGGATATTTTG  849

seq1  CCTGTAGGTGTCTTTATGCATCACATGCATGCAGTGCCCACAGAGGCCAG  900
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CCTGTAGGTGTCTTTATGCATCACATGCATGCAGTG-CCACAGAGG-CAG  897

seq1  AAGAGGCTATTGGGTCCCTGGGACCTGGAGTTATAAACTAT  941
       |||||||||||||||||||||||||||| |||| ||||||
seq2  -AGAGGCTATTGGGTCCCTGGGACCTGGA-TTAT-AACTAT  935

seq1: chr10_12807965_12809051
seq2: B6Ng01-157E19.g_67_1129 (reverse)

seq1  GTTCAGTTTTACCACGAGAGGTGCTTTTCACATCTGTGGTGTTTCAAAAC  50
      ||||||||    ||||||| ||||||| || |||||||| | ||| ||||
seq2  GTTCAGTT---ACACGAGA-GTGCTTTCCA-ATCTGTGGAGGTTC-AAAC  44

seq1  TGAGAGGGTTTCTTGAGAAAATGTCAGGTGTTGTTGCTTTTGTTTCAGTT  100
      |||||| |  || |||||||||||||| ||    |||  |||||||||  
seq2  TGAGAGAG-CTCCTGAGAAAATGTCAGCTG----TGC--TTGTTTCAG--  85

seq1  TTTATTTATTTTTTTACATATAGATTTGATGACACTTCTAGCAGCCATGT  150
      ||||||   |||||||||||||||||||||||||| |||||||| |||||
seq2  TTTATT--ATTTTTTACATATAGATTTGATGACAC-TCTAGCAG-CATGT  131

seq1  AGCACAGAAGCCATCCGGCAGGAGCTGTGCAGTACCCCAACCCCACCCAT  200
      |||||||||| ||||||||||||||||||||||||||  | |||||||||
seq2  AGCACAGAAG-CATCCGGCAGGAGCTGTGCAGTACCC--AACCCACCCAT  178

seq1  CTTAGTGATTCACCATCTTCTTCCCTGGTTTCTACCTTGTGAGGATTTAT  250
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  CTTAGTGATTCACCATC-TCTTCCCTGGTTTCTACC-TGTGAGGATTTAT  226

seq1  TTACAACCTGTGTCCTAAAACCCTTTGGGGATGTGTGTTTCTGAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCTGTGTCCTAAAACCCTTTGGGGATGTGTGTTTCTGAGGGAAA  276

seq1  GCTTAGCTGACACAGCTAACAGGGAAACCCGTTCACATTTAGAAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTGACACAGCTAACAGGGAAACCCGTTCACATTTAGAAAAAACT  326

seq1  CTGAAAATAGCTTAACAGAAAAAAAGGGGTTTCCTATGACTTATCATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAGCTTAACAGAAAAAAAGGGGTTTCCTATGACTTATCATTAA  376

seq1  TGAGAGATTCCTGTATAAGCATATTTTAGGGAAGCATGAGAAAGTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATTCCTGTATAAGCATATTTTAGGGAAGCATGAGAAAGTCAAAA  426

seq1  TTAGACCACCCAAGGGAAAGAAAACAGCATATAAAATAACCAAGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCACCCAAGGGAAAGAAAACAGCATATAAAATAACCAAGGAAAGA  476

seq1  ATAAAAAAACAAAACAAAAAAACCTCTTCTCTTATTTTTCTTTTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAACAAAACAAAAAAACCTCTTCTCTTATTTTTCTTTTCTTTTT  526

seq1  TCAAACAGGGTCTCACTGTGGCTGTCTCAAGTATAGATCGGCCTTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGGGTCTCACTGTGGCTGTCTCAAGTATAGATCGGCCTTGAACT  576

seq1  TTTCCACCCTCCTGTTTTTGCCTTCTGAGTGCTGGGATTACAGATTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCCTCCTGTTTTTGCCTTCTGAGTGCTGGGATTACAGATTCTCA  626

seq1  TAACCTGTCCCAAACGGCATTCTTACAGTGTCCAATTTGAGAATTGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTCCCAAACGGCATTCTTACAGTGTCCAATTTGAGAATTGATAG  676

seq1  CAGAGCTAAGATGTATTCAAATGTCATGTGTGTACAATATGCTTATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAAGATGTATTCAAATGTCATGTGTGTACAATATGCTTATATCC  726

seq1  ATCCCATCTTCCTGCCCCTTGGAGACACGTTGAAAAAAACTATTAGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCTTCCTGCCCCTTGGAGACACGTTGAAAAAAACTATTAGTCTA  776

seq1  AGCCTTGAGAAGTCTCAAAAATCTGCCACATTGGAAGTCAGTCAGGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAGAAGTCTCAAAAATCTGCCACATTGGAAGTCAGTCAGGACCA  826

seq1  TCTTTATGAAGTGTCCAGGAACTGGAACACTTAATTCTGCTATTCAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGAAGTGTCCAGGAACTGGAACACTTAATTCTGCTATTCAGTCC  876

seq1  ACCTCCTGGGGTCCTACATTCTGCTGACAACTCCAGTCCGAGTTCACGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGGGGTCCTACATTCTGCTGACAACTCCAGTCCGAGTTCACGGG  926

seq1  GAGGGCCTGGTTCAGTCGAGGAGTCTGGGCTTTACCAGCGAGGGCTGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTGGTTCAGTCGAGGAGTCTGGGCTTTACCAGCGAGGGCTGAGT  976

seq1  TGCCTAAACAAGCTGTATTCCTAATCTTAGCTGTTTCCATGTGCACGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAACAAGCTGTATTCCTAATCTTAGCTGTTTCCATGTGCACGCTT  1026

seq1  CCTTCCAGGCCTCCATGCCTTGAAACCTAAAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGCCTCCATGCCTTGAAACCTAAAGAATTC  1063