BAC Information

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BAC

Clone NameB6Ng01-157J21
Chromosome10 (Build37)
Map Location 117,739,009 - 117,876,816
singlet/doubletdoublet
Overlap geneLOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216
Upstream geneCpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb
Downstream geneIfng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157J21.bB6Ng01-157J21.g
ACCDH951800DH951801
length846814
definitionDH951800|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J21, 5' end.DH951801|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,739,009 - 117,739,852)(117,876,004 - 117,876,816)
sequence
gaattctccatttgaaagggctgtcaggatgtgttggattaggggggttc
atattataatttacttcatgtaactttggattaagtacccataatctaga
gaatacagaacatagaaaaacaataacatctaaaaggacttggaaagaga
tgatatcaacctcttctttttttccccttagcccaactatgtctctgtaa
tatggaagtaaaaataaaaacagggttaccctgcgctcagtggggcagaa
ataagaacaggcagcagtgaaagaaagaatattgcatctcagctagagaa
aagcaggcttggagacaacagactgaagtggcaggcattaggacccagag
gagccacaccccagcctccagcctaagcagccagactctgcctgctggcc
acagcttgtctagcaatgtacacttcaggtttgggttttgtgttctcccg
agacttggcctcagcagctacacactgacatgagcttaggggcctaccca
gcccagagtactagctcccactggttgctgtctagtgttgatggcaggag
actggggaaaatcttagtcacctttagaaaccagtaaacataccacgcaa
aacaatgtgtcgactttgtttgtttgtttgttttttttaaatccacaatt
gaggtctgatattaggacccaagtgataaaggaaatgcagtgactttatc
atggcctgcctggatcccatgagcatccaggagggtgaaaaccaaaagga
ttcaaaaaagaacagagacagagagagagagagagagagagagagagaga
gagagagagagagagagagagaaaaaaagagagagagagagagaga
gaattcttcccggcattcctagtggctcaattaaaacttgatggttattt
ggcaatgtcagatgtttaacaacgctatgcagcttgttcgtgcagttcct
ttggccatgtgccccctttccctcatctgagcatctcagagtggtaccca
gttatcttgacccagatgcaaaccatcctctgttttggttctcccccaag
cctccagcttcaaatcagactttatcctctgggcagggctagcactttgt
ttctatgcttcatgggttctcaatttccccagtctcatatacgaggtaac
tatgcatgccccctacccccatcccagtgcccactaatttccttaaaacc
agaaagtgtttcattgcttctgtgacacaatttatttccctcaaatacat
aagcataaagatttatacacaaacaacacacacacacacacaaatattca
tttgaatgtttacctaagaatctctgttttgacagtcaggaacatctctt
ggttggtagagtgcttgtataaaaaccctgacttaaaataggcatgaaat
acagatggaaacagaggtaagatgatcatgagtgcgaggtcaccttctgc
tgctggagacttgaaggccagtttaagaatcatgagaatctgtcttaaaa
aaaaaatctagcagggtcgtggtaactcatacctttaatcccagcactca
ggtgacagaagccagcaatctctgtgaatttgaggttatcctggtctaca
gagtgagttccaggataaccagagctacacagtgaaaccctttctggggg
gggggggggaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117739009_117739852
seq2: B6Ng01-157J21.b_48_893

seq1  GAATTCTCCATTTGAAAGGGCTGTCAGGATGTGTTGGATTAGGGGGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTTGAAAGGGCTGTCAGGATGTGTTGGATTAGGGGGGTTC  50

seq1  ATATTATAATTTACTTCATGTAACTTTGGATTAAGTACCCATAATCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAATTTACTTCATGTAACTTTGGATTAAGTACCCATAATCTAGA  100

seq1  GAATACAGAACATAGAAAAACAATAACATCTAAAAGGACTTGGAAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAACATAGAAAAACAATAACATCTAAAAGGACTTGGAAAGAGA  150

seq1  TGATATCAACCTCTTCTTTTTTTCCCCTTAGCCCAACTATGTCTCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCAACCTCTTCTTTTTTTCCCCTTAGCCCAACTATGTCTCTGTAA  200

seq1  TATGGAAGTAAAAATAAAAACAGGGTTACCCTGCGCTCAGTGGGGCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTAAAAATAAAAACAGGGTTACCCTGCGCTCAGTGGGGCAGAA  250

seq1  ATAAGAACAGGCAGCAGTGAAAGAAAGAATATTGCATCTCAGCTAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACAGGCAGCAGTGAAAGAAAGAATATTGCATCTCAGCTAGAGAA  300

seq1  AAGCAGGCTTGGAGACAACAGACTGAAGTGGCAGGCATTAGGACCCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTTGGAGACAACAGACTGAAGTGGCAGGCATTAGGACCCAGAG  350

seq1  GAGCCACACCCCAGCCTCCAGCCTAAGCAGCCAGACTCTGCCTGCTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACACCCCAGCCTCCAGCCTAAGCAGCCAGACTCTGCCTGCTGGCC  400

seq1  ACAGCTTGTCTAGCAATGTACACTTCAGGTTTGGGTTTTGTGTTCTCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGTCTAGCAATGTACACTTCAGGTTTGGGTTTTGTGTTCTCCCG  450

seq1  AGACTTGGCCTCAGCAGCTACACACTGACATGAGCTTAGGGGCCTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCCTCAGCAGCTACACACTGACATGAGCTTAGGGGCCTACCCA  500

seq1  GCCCAGAGTACTAGCTCCCACTGGTTGCTGTCTAGTGTTGATGGCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGTACTAGCTCCCACTGGTTGCTGTCTAGTGTTGATGGCAGGAG  550

seq1  ACTGGGGAAAATCTTAGTCACCTTTAGAAACCAGTAAACATACCACGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAAATCTTAGTCACCTTTAGAAACCAGTAAACATACCACGCAA  600

seq1  AACAATGTGTCGACTTTGTTTGTTTGTTTGTTTTTTTTAAATCCACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTCGACTTTGTTTGTTTGTTTGTTTTTTTTAAATCCACAATT  650

seq1  GAGGTCTGATATTAGGACCCAAGTGATAAAGGAAATGCAGTGACTTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGATATTAGGACCCAAGTGATAAAGGAAATGCAGTGACTTTATC  700

seq1  ATGGCCTGCCTGGATCCCATGAGCATCCAGGAGGGTGAAAACCAAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGCCTGGATCCCATGAGCATCCAGGAGGGTGAAAACCAAAAGGA  750

seq1  TTCAAAAAAGAACAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAGAACAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  800

seq1  GAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGA--  844
      |||||||||||||||||||||| ||| |||||||||||||||||  
seq2  GAGAGAGAGAGAGAGAGAGAGAAAAAAAGAGAGAGAGAGAGAGAGA  846

seq1: chr10_117876004_117876816
seq2: B6Ng01-157J21.g_68_881 (reverse)

seq1  AGATT-CCCCCCCCCCCCCAGAAAGGGTTTCACTGTGTAGCTCTGGTTAT  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCCCCCCCCCCCCAGAAAGGGTTTCACTGTGTAGCTCTGGTTAT  50

seq1  CCTGGAACTCACTCTGTAGACCAGGATAACCTCAAATTCACAGAGATTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGATAACCTCAAATTCACAGAGATTGC  100

seq1  TGGCTTCTGTCACCTGAGTGCTGGGATTAAAGGTATGAGTTACCACGACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGTCACCTGAGTGCTGGGATTAAAGGTATGAGTTACCACGACC  150

seq1  CTGCTAGATTTTTTTTTTAAGACAGATTCTCATGATTCTTAAACTGGCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGATTTTTTTTTTAAGACAGATTCTCATGATTCTTAAACTGGCCT  200

seq1  TCAAGTCTCCAGCAGCAGAAGGTGACCTCGCACTCATGATCATCTTACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTCCAGCAGCAGAAGGTGACCTCGCACTCATGATCATCTTACCT  250

seq1  CTGTTTCCATCTGTATTTCATGCCTATTTTAAGTCAGGGTTTTTATACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCATCTGTATTTCATGCCTATTTTAAGTCAGGGTTTTTATACAA  300

seq1  GCACTCTACCAACCAAGAGATGTTCCTGACTGTCAAAACAGAGATTCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTACCAACCAAGAGATGTTCCTGACTGTCAAAACAGAGATTCTTA  350

seq1  GGTAAACATTCAAATGAATATTTGTGTGTGTGTGTGTGTTGTTTGTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACATTCAAATGAATATTTGTGTGTGTGTGTGTGTTGTTTGTGTAT  400

seq1  AAATCTTTATGCTTATGTATTTGAGGGAAATAAATTGTGTCACAGAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTATGCTTATGTATTTGAGGGAAATAAATTGTGTCACAGAAGCA  450

seq1  ATGAAACACTTTCTGGTTTTAAGGAAATTAGTGGGCACTGGGATGGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACACTTTCTGGTTTTAAGGAAATTAGTGGGCACTGGGATGGGGGT  500

seq1  AGGGGGCATGCATAGTTACCTCGTATATGAGACTGGGGAAATTGAGAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCATGCATAGTTACCTCGTATATGAGACTGGGGAAATTGAGAACC  550

seq1  CATGAAGCATAGAAACAAAGTGCTAGCCCTGCCCAGAGGATAAAGTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCATAGAAACAAAGTGCTAGCCCTGCCCAGAGGATAAAGTCTGA  600

seq1  TTTGAAGCTGGAGGCTTGGGGGAGAACCAAAACAGAGGATGGTTTGCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCTGGAGGCTTGGGGGAGAACCAAAACAGAGGATGGTTTGCATC  650

seq1  TGGGTCAAGATAACTGGGTACCACTCTGAGATGCTCAGATGAGGGAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAAGATAACTGGGTACCACTCTGAGATGCTCAGATGAGGGAAAGG  700

seq1  GGGCACATGGCCAAAGGAACTGCACGAACAAGCTGCATAGCGTTGTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATGGCCAAAGGAACTGCACGAACAAGCTGCATAGCGTTGTTAAA  750

seq1  CATCTGACATTGCCAAATAACCATCAAGTTTTAATTGAGCCACTAGGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACATTGCCAAATAACCATCAAGTTTTAATTGAGCCACTAGGAAT  800

seq1  GCCGGGAAGAATTC  813
      ||||||||||||||
seq2  GCCGGGAAGAATTC  814