BAC Information

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BAC

Clone NameB6Ng01-157K06
Chromosome10 (Build37)
Map Location 88,794,205 - 88,887,619
singlet/doubletdoublet
Overlap geneGas2l3
Upstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
Downstream geneNr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157K06.bB6Ng01-157K06.g
ACCDH951818DH951819
length1,1051,078
definitionDH951818|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K06, 5' end.DH951819|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,886,497 - 88,887,619)(88,794,205 - 88,795,305)
sequence
gaattctcccctttgtagcttactctttgaaatggtctatgaatgtcatt
agtttttaaatgtagaagacatctttcagcgtgctgaagggcaatgtagg
actaagaaaaatactgtcagtaccagtttgtagcattgaagcgataattt
tcttttctctttctttttctcttaacatctgcttgacactcaaagtaatt
ttatgaaagaagtatactattttaaagtacttgggatatttataaaaaca
ggttggaaatatttcgtgatcaattcctttatttctgtagatgttaaatt
agaatggaggtctttctgttgctttaaacagtaatacattatagccaggc
atgttggtacacacctatacacttacataatctcagcccgagctgtgtat
caagcaggacctgttccagaggaaacagattggttttatgcgtataacag
atgctattcatacctgaaggaacgactgccctttgtgctggtgcagccag
ggtgtgtgctcagaacacgttgtacgttgggttccactgggtccagagtt
ctttaaggtttctaactctaaggaaaaggtagtcataggtactgtcctgg
cgaagctaacacgaggcctatgaaaagtgtcaggctcccgctgcctcctc
ctcctctccctcctcttctccctctccctcctttcatcttcctcctcctc
atctttctccttttcctccctctcttcttcatcctctcctcttcctctct
ttctcctcctctccctctcctctccctcttcctcttcctccttttatctt
cctcctcctccccctcttcctctttctcttcctcctcttcctcttcttcc
ttctcctcctcttccttccacttctcctcttttgctctcttgttaaagtt
atgtcatttatcttttttatggacctgcaaggtttgtgtgcattctaaat
gctttacacatcaaatataatttgcagtatttttttccatctttcgctct
ttaatatatcctgggatgtgtagagttttttattttaaatttattggata
taattactacatacataatatatgatttatgtaatatatggagggtttgt
ctgca
gaattcttcagccctactagtgaaaggaaataaaacgtgagacctgtgat
tcatgtaatgtatgtcaaatagcccaaagagttgtttgtgagctttgaaa
cctggggctgagaacatagcagaacagaccaggacatgccccggcaggcc
cgtcgcctccctatctcccatccctctgacctaagttaaatgttaacagg
ctgctgatgtttaaatggaccaatcatgtgaaaccttgccaattcctccc
ccagccccactccttttctataaaaacccctagcttccaagcctcgtggt
cgaatccactgtctcctgtgtgagatacgtttcgactcggagctccgcca
ttaaaatacctcgtgttgttacatcaaggtgttgcattctgttcgtgatt
cttgggtacacgcagaatcaggagttgagtgggggtttccccactaggtt
ctttcattagtaatagcagtatgcatcagtggcctaatgctgctatattt
gaaattgtgaggttgatttacataacaaatcactgtttacgaaagtaaca
gctaaaatgagatccaagaaacaccagaagtaaaagatataaaaacatac
ggaaaaagagatgacgtacagcaagcagatattatcccaagtaaaacaaa
ccaaggtatctgtcacctttagatgaaaagactacaagagtcattaatag
tcacagacatttcagggcttaatcctccagggagatacggaaagttcaaa
gctgtacactcaaagtaattacaaaatacataagacagcattgaaattat
ttattgatatatgacactgtaaggagagattggcaaattcgccatcaaag
gggaggttttaacttagtttactaattggttggttgaataagtaaaaatg
tagtgcaaacacacacacacacacacacacacacactctaaagaatagga
agaccagtcagaaaatgagtgatcatcagtacagaggagacatagaggta
atggggaggagtggcgtagtgatcaaatgcatatgctatgtacaagctat
tatcatatacattactatgcctaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88886497_88887619
seq2: B6Ng01-157K06.b_46_1150 (reverse)

seq1  TGCAGACAAAACACTCATATATATTACATATAATCATATATATAATGTAT  50
      ||||||| |||| |||  |||||||||||| ||||  |||||| ||||||
seq2  TGCAGAC-AAACCCTC-CATATATTACATA-AATC--ATATATTATGTAT  45

seq1  GTAGTAAATATATAATACAATAAAATTTTAAAAATTAAAAAAACTCTACA  100
      ||||||| |||   || |||||||  |||||||    |||||||||||||
seq2  GTAGTAATTAT---ATCCAATAAA--TTTAAAA---TAAAAAACTCTACA  87

seq1  CATCCCAGGATAATATTAAAGAGCGAAAGATGGAAAAAAATACTTGCAAA  150
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CATCCCAGGAT-ATATTAAAGAGCGAAAGATGGAAAAAAATAC-TGCAAA  135

seq1  TTATATTTGATGTTGTAAAGCATTTAGAATGCACACAAAACCTTTGCAGG  200
      |||||||||||| ||||||||||||||||||||||||||  | |||||||
seq2  TTATATTTGATG-TGTAAAGCATTTAGAATGCACACAAA--CCTTGCAGG  182

seq1  TCCATAAAAAAGATAAATGACATAACTTTAACAAGAGAGCAAAAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAAAAGATAAATGACATAACTTTAACAAGAGAGCAAAAGAGGAG  232

seq1  AAGTGGAAGGAAGAGGAGGAGAAGGAAGAAGAGGAAGAGGAGGAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGGAAGAGGAGGAGAAGGAAGAAGAGGAAGAGGAGGAAGAGAA  282

seq1  AGAGGAAGAGGGGGAGGAGGAGGAAGATAAAAGGAGGAAGAGGAAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAGGGGGAGGAGGAGGAAGATAAAAGGAGGAAGAGGAAGAGGG  332

seq1  AGAGGAGAGGGAGAGGAGGAGAAAGAGAGGAAGAGGAGAGGATGAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGGAGAGGAGGAGAAAGAGAGGAAGAGGAGAGGATGAAGAAG  382

seq1  AGAGGGAGGAAAAGGAGAAAGATGAGGAGGAGGAAGATGAAAGGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGAAAAGGAGAAAGATGAGGAGGAGGAAGATGAAAGGAGGGAG  432

seq1  AGGGAGAAGAGGAGGGAGAGGAGGAGGAGGCAGCGGGAGCCTGACACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGAGGAGGGAGAGGAGGAGGAGGCAGCGGGAGCCTGACACTTT  482

seq1  TCATAGGCCTCGTGTTAGCTTCGCCAGGACAGTACCTATGACTACCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGCCTCGTGTTAGCTTCGCCAGGACAGTACCTATGACTACCTTTT  532

seq1  CCTTAGAGTTAGAAACCTTAAAGAACTCTGGACCCAGTGGAACCCAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGTTAGAAACCTTAAAGAACTCTGGACCCAGTGGAACCCAACGT  582

seq1  ACAACGTGTTCTGAGCACACACCCTGGCTGCACCAGCACAAAGGGCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGTTCTGAGCACACACCCTGGCTGCACCAGCACAAAGGGCAGTC  632

seq1  GTTCCTTCAGGTATGAATAGCATCTGTTATACGCATAAAACCAATCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCAGGTATGAATAGCATCTGTTATACGCATAAAACCAATCTGTT  682

seq1  TCCTCTGGAACAGGTCCTGCTTGATACACAGCTCGGGCTGAGATTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGAACAGGTCCTGCTTGATACACAGCTCGGGCTGAGATTATGTA  732

seq1  AGTGTATAGGTGTGTACCAACATGCCTGGCTATAATGTATTACTGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAGGTGTGTACCAACATGCCTGGCTATAATGTATTACTGTTTAA  782

seq1  AGCAACAGAAAGACCTCCATTCTAATTTAACATCTACAGAAATAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAAAGACCTCCATTCTAATTTAACATCTACAGAAATAAAGGAA  832

seq1  TTGATCACGAAATATTTCCAACCTGTTTTTATAAATATCCCAAGTACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACGAAATATTTCCAACCTGTTTTTATAAATATCCCAAGTACTTT  882

seq1  AAAATAGTATACTTCTTTCATAAAATTACTTTGAGTGTCAAGCAGATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTATACTTCTTTCATAAAATTACTTTGAGTGTCAAGCAGATGTT  932

seq1  AAGAGAAAAAGAAAGAGAAAAGAAAATTATCGCTTCAATGCTACAAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAAGAAAGAGAAAAGAAAATTATCGCTTCAATGCTACAAACTG  982

seq1  GTACTGACAGTATTTTTCTTAGTCCTACATTGCCCTTCAGCACGCTGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGACAGTATTTTTCTTAGTCCTACATTGCCCTTCAGCACGCTGAAA  1032

seq1  GATGTCTTCTACATTTAAAAACTAATGACATTCATAGACCATTTCAAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTCTACATTTAAAAACTAATGACATTCATAGACCATTTCAAAGA  1082

seq1  GTAAGCTACAAAGGGGAGAATTC  1123
      |||||||||||||||||||||||
seq2  GTAAGCTACAAAGGGGAGAATTC  1105

seq1: chr10_88794205_88795305
seq2: B6Ng01-157K06.g_67_1144

seq1  GAATTCTTCAGCCCTACTAGTGAAAGGAAATAAAACGTGAGACCTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCCCTACTAGTGAAAGGAAATAAAACGTGAGACCTGTGAT  50

seq1  TCATGTAATGTATGTCAAATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAATGTATGTCAAATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAA  100

seq1  CCTGGGGCTGAGAACATAGCAGAACAGACCAGGACATGCCCCGGCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTGAGAACATAGCAGAACAGACCAGGACATGCCCCGGCAGGCC  150

seq1  CGTCGCCTCCCTATCTCCCATCCCTCTGACCTAAGTTAAATGTTAACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGCCTCCCTATCTCCCATCCCTCTGACCTAAGTTAAATGTTAACAGG  200

seq1  CTGCTGATGTTTAAATGGACCAATCATGTGAAACCTTGCCAATTCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATGTTTAAATGGACCAATCATGTGAAACCTTGCCAATTCCTCCC  250

seq1  CCAGCCCCACTCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCACTCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGTGGT  300

seq1  CGAATCCACTGTCTCCTGTGTGAGATACGTTTCGACTCGGAGCTCCGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCCACTGTCTCCTGTGTGAGATACGTTTCGACTCGGAGCTCCGCCA  350

seq1  TTAAAATACCTCGTGTTGTTACATCAAGGTGTTGCATTCTGTTCGTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACCTCGTGTTGTTACATCAAGGTGTTGCATTCTGTTCGTGATT  400

seq1  CTTGGGTACACGCAGAATCAGGAGTTGAGTGGGGGTTTCCCCACTAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTACACGCAGAATCAGGAGTTGAGTGGGGGTTTCCCCACTAGGTT  450

seq1  CTTTCATTAGTAATAGCAGTATGCATCAGTGGCCTAATGCTGCTATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTAGTAATAGCAGTATGCATCAGTGGCCTAATGCTGCTATATTT  500

seq1  GAAATTGTGAGGTTGATTTACATAACAAATCACTGTTTACGAAAGTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTGAGGTTGATTTACATAACAAATCACTGTTTACGAAAGTAACA  550

seq1  GCTAAAATGAGATCCAAGAAACACCAGAAGTAAAAGATATAAAAACATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATGAGATCCAAGAAACACCAGAAGTAAAAGATATAAAAACATAC  600

seq1  GGAAAAAGAGATGACGTACAGCAAGCAGATATTATCCCAAGTAAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGATGACGTACAGCAAGCAGATATTATCCCAAGTAAAACAAA  650

seq1  CCAAGGTATCTGTCACCTTTAGATGAAAAGACTACAAGAGTCATTAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATCTGTCACCTTTAGATGAAAAGACTACAAGAGTCATTAATAG  700

seq1  TCACAGACATTTCAGGGCTTAATCCTCCAGGGAGATACGGAAAGTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACATTTCAGGGCTTAATCCTCCAGGGAGATACGGAAAGTTCAAA  750

seq1  GCTGTACACTCAAAGTAATTACAAAATACATAAGACAGCATTGAAATTAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTGTACACTCAAAGTAATTACAAAATACATAAGACAGCATTGAAATT-A  799

seq1  TTTATTGATATATGACACTGTAAGGAGAGATTGGCAAATTCGCCATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGATATATGACACTGTAAGGAGAGATTGGCAAATTCGCCATCAAA  849

seq1  GGGGGAGGTTTTAACTTAGGTTTACTAATTGGTTGGTTGAATAAGTAAAA  900
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -GGGGAGGTTTTAACTTA-GTTTACTAATTGGTTGGTTGAATAAGTAAAA  897

seq1  ATGTAGTGCAAACACACACACACACACACACACACACACCCCTAAAGAAC  950
      |||||||||||||||||||||||||||||||||||||| | |||||||| 
seq2  ATGTAGTGCAAACACACACACACACACACACACACACA-CTCTAAAGAAT  946

seq1  AGGAAGACCAGTCAGAAAAAGGAAGTTGATCATCAGTACCAGGAGGAGGA  1000
      ||||||||||||||||||| |  || |||||||||||||   ||||| ||
seq2  AGGAAGACCAGTCAGAAAATG--AG-TGATCATCAGTAC--AGAGGA-GA  990

seq1  CAATAGAGGGTAATGGGGAGGAGTGGGCGTCAGGGTGATCAAAATGCATT  1050
      | ||||| |||||||||||||||| |||||    |||||| ||||||| |
seq2  C-ATAGA-GGTAATGGGGAGGAGT-GGCGT---AGTGATC-AAATGCA-T  1032

seq1  ATGCATATGTACAAAACTCATTATCATATACAATTACCATATG-CTAATA  1099
      |||| ||||||| || || |||||||||||| |||||  |||| ||||||
seq2  ATGC-TATGTAC-AAGCT-ATTATCATATAC-ATTAC--TATGCCTAATA  1076

seq1  AA  1101
      ||
seq2  AA  1078