BAC Information

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BAC

Clone NameB6Ng01-158A20
Chromosome10 (Build37)13 (Build37)
Map Location 104,053,903 - 104,054,363108,009,789 - 108,010,867
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158A20.bB6Ng01-158A20.g
ACCDH952115DH952116
length9641,081
definitionDH952115|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A20, 5' end.DH952116|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(108,009,789 - 108,010,867)
sequence
gaattctcacctgaggaataccaaatagctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agaagctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctcatacaaccactctggaaatcagtctggtggttcctca
gaaaattggacagagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaaacagaggaatggatacagaaaatgtggtacatttacataat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcttgagtgacataacccaatcacaa
aagaactcaaatgatatgttctcactgataagtggatattagcccagaaa
cttagaatacctaagatacaagatacaatttgctaaatgcatgaaactca
agaagaatgaagaccaaagtgtggacactttgccccttcttagaattggg
aacaaaacacccatagaaggagttacagagacatagtttggagctgagac
gaaaggatggaccatctagagactgccatacctggggatccatcccataa
tcagcttccaaaccctgacaccattgcatacactagcaagattttgctga
aaggacccagatatggctgtctcttgtgagactatgccggggcctggcaa
acacaaagtggatgcttacagtcagctattggatggatcacaggggcctc
aatggaggagctag
gtgtgtgagatctcgagggcttggggttgtcccagagccacttagcaggt
gagaaatcatggctgtgtttgtgctgactgggaaggggggtgtcttgcac
ttctgggatgattgtgctgaggacagctgaatcagaggtgggaacttcca
atctggagggcagtggagagggctttgccaggtaacattgatcagaacag
gcagggcccgctgaggagatacagtggcaagctctgctgctgacaggtga
ctactgtatcggtggaggagagctaaagagaagagcagccatgctctctg
gagaaactgaggagaggtaactagacagattcagctgtccacggtgcctg
gtgcaccctgcagctcagcgattgttagcagtattctgctaatgaatgtg
gaccgtggcctggaagctctgtttcctctggcattaacattttcttgctt
tattttaatgaggaaaatgaaattcttaccagtttcctatattgcacgcg
gatggggagggtatgacatttaacaacagtgctttggaaaaatattaagc
attatacaaatatgaagaattgttgctgttattattctgatggcaggcac
acacagccttgactcagccttaatattgaggggatattggagggattagg
agggactctgcaactattgggtagttgcttggcatagcctttcataaacg
gccagctaatctgtccatattaaatccattttaggaaaccaaacacgcaa
actctgtgtcaatacactgcaaacgcagacatagatcataaaacttgatc
acttctcatcagacaccacatgctcataaattaaaaaacatgtcaggtta
ttaacttcaatttgaaaccatcacttgataatctcctgtgtaaaaggaga
gattgcttaaagtaggaacagtcgccctaggtttcctgatagagagatgc
agccaaataaaatggggggagggaaggcctaactttataccgctgaattc
agaggggggaagcaagaacaattaggaggggtatggaggtgattaattca
actctcaattcatgtggaaactttgttaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-158A20.b_38_509 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||| ||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTATGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTG-TTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTAT  89
      || ||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  TCCATTCCTCTGTTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTAT  100

seq1  TATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGG  139
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGG  150

seq1  TTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCC  189
      ||||  |||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGGATCCTCC  200

seq1  GGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAG  239
       |||||||| ||||||||||||||| ||||| |||||| |||||||||||
seq2  AGTAGTACTCTGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAG  250

seq1  TGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  289
      ||||||||  ||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATGAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  300

seq1  CTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCC  339
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCCACATCCTCGCCAGCTTCTGCTGTCACCTGAATTTTTGATCTTAGCC  350

seq1  ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTC  400

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTC  439
      |||||||||||||||||||||||||||||||||||||||||| || ||| 
seq2  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCTATTT  450

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  472

seq1: chr13_108009789_108010867
seq2: B6Ng01-158A20.g_72_1152

seq1  GTGTGTGAGATCTCGAGGGCTTGGGGTTGTCCCAGAGCCACTTAGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGATCTCGAGGGCTTGGGGTTGTCCCAGAGCCACTTAGCAGGT  50

seq1  GAGAAATCATGGCTGTGTTTGTGCTGACTGGGAAGGGGGGTGTCTTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCATGGCTGTGTTTGTGCTGACTGGGAAGGGGGGTGTCTTGCAC  100

seq1  TTCTGGGATGATTGTGCTGAGGACAGCTGAATCAGAGGTGGGAACTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGATGATTGTGCTGAGGACAGCTGAATCAGAGGTGGGAACTTCCA  150

seq1  ATCTGGAGGGCAGTGGAGAGGGCTTTGCCAGGTAACATTGATCAGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGGCAGTGGAGAGGGCTTTGCCAGGTAACATTGATCAGAACAG  200

seq1  GCAGGGCCCGCTGAGGAGATACAGTGGCAAGCTCTGCTGCTGACAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCCGCTGAGGAGATACAGTGGCAAGCTCTGCTGCTGACAGGTGA  250

seq1  CTACTGTATCGGTGGAGGAGAGCTAAAGAGAAGAGCAGCCATGCTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATCGGTGGAGGAGAGCTAAAGAGAAGAGCAGCCATGCTCTCTG  300

seq1  GAGAAACTGAGGAGAGGTAACTAGACAGATTCAGCTGTCCACGGTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGAGGAGAGGTAACTAGACAGATTCAGCTGTCCACGGTGCCTG  350

seq1  GTGCACCCTGCAGCTCAGCGATTGTTAGCAGTATTCTGCTAATGAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCTGCAGCTCAGCGATTGTTAGCAGTATTCTGCTAATGAATGTG  400

seq1  GACCGTGGCCTGGAAGCTCTGTTTCCTCTGGCATTAACATTTTCTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGGCCTGGAAGCTCTGTTTCCTCTGGCATTAACATTTTCTTGCTT  450

seq1  TATTTTAATGAGGAAAATGAAATTCTTACCAGTTTCCTATATTGCACGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATGAGGAAAATGAAATTCTTACCAGTTTCCTATATTGCACGCG  500

seq1  GATGGGGAGGGTATGACATTTAACAACAGTGCTTTGGAAAAATATTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGGGTATGACATTTAACAACAGTGCTTTGGAAAAATATTAAGC  550

seq1  ATTATACAAATATGAAGAATTGTTGCTGTTATTATTCTGATGGCAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAAATATGAAGAATTGTTGCTGTTATTATTCTGATGGCAGGCAC  600

seq1  ACACAGCCTTGACTCAGCCTTAATATTGAGGGGATATTGGAGGGATTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTTGACTCAGCCTTAATATTGAGGGGATATTGGAGGGATTAGG  650

seq1  AGGGACTCTGCAACTATTGGGTAGTTGCTTGGCATAGCC-TTCATAAACG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGGACTCTGCAACTATTGGGTAGTTGCTTGGCATAGCCTTTCATAAACG  700

seq1  GCCAGCTAATCTGTCCATATTAAATCCATTTTAGGAAACCAAACACGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTAATCTGTCCATATTAAATCCATTTTAGGAAACCAAACACGCAA  750

seq1  ACTCTGTGTCAATACACTGCAAACGCAGACATAGATCATAAAACTTGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTCAATACACTGCAAACGCAGACATAGATCATAAAACTTGATC  800

seq1  ACTTCTCATCAGACACCACATGCTCATAAATTAAAAAACATGTCAGGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATCAGACACCACATGCTCATAAATTAAAAAACATGTCAGGTTA  850

seq1  TTAACTCCAATTTGAAACCATCACTTGATAATCTCCTGTGTAAAAGGAAG  899
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAACTTCAATTTGAAACCATCACTTGATAATCTCCTGTGTAAAAGG-AG  899

seq1  AGATTGCTTAAAGTAGGAACAGTCGCCCTAAGTTTCCTGATAGAGAGATG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGATTGCTTAAAGTAGGAACAGTCGCCCTAGGTTTCCTGATAGAGAGATG  949

seq1  CAGCCAAAATAAAAT-GGGGGAGGGAAGG-CTAAATTTATACGGCAG-AG  996
      ||||| ||||||||| ||||||||||||| |||| ||||||| || | | 
seq2  CAGCC-AAATAAAATGGGGGGAGGGAAGGCCTAACTTTATACCGCTGAAT  998

seq1  TCAGA-GGGGGAAGCAAGACAAATTAGGA-GGGCATGGAGTGTATTTAAA  1044
      ||||| |||||||||||||  |||||||| ||| |||||| ||  |||| 
seq2  TCAGAGGGGGGAAGCAAGAACAATTAGGAGGGGTATGGAG-GTGATTAAT  1047

seq1  TCAAACTTCAAAGTCTTTGAGAAACTTTGTTAAGT  1079
      || ||||   || || |   |||||||||||||||
seq2  TC-AACTCTCAATTCATGTGGAAACTTTGTTAAGT  1081