BAC Information

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BAC

Clone NameB6Ng01-159C17
Chromosome10 (Build37)
Map Location 53,626,337 - 53,738,226
singlet/doubletdoublet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C17.bB6Ng01-159C17.g
ACCDH952917DH952918
length1,0291,037
definitionDH952917|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C17, 5' end.DH952918|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,737,191 - 53,738,226)(53,626,337 - 53,627,384)
sequence
gaattcaagaacttgagaagttataggcactattcttgtcagggttttct
cttgctgtgatgaaacaccatggccaaaagcaacttgaggaggtaagggt
ttgtttgatttacatatcttgcgtcacagtctattgactgatgcctcaga
ttcaacctgagcatgaacctggaagcaggaggtggtgcggaggtcatgga
agaatgctccttcctcgtttcctcttcatggcttgctcaatctgctttct
tatagaaaccaggaccagcagcccaggaatagcaccacccataatcggct
gggctctcccccatcaatcactaattaagaaaatgcgctacaggcttgcc
tacagcttgatcttatccagacattttctcaactgagctttccttctctt
gaatggttctagcctgtgttaagttgatataaatctagccagcacaggta
ctcagtaagcctcataactaaagcattctttctcaatgacctacagtact
caacctcctgatatttttatgtcaacttaattataccacctatttcatta
aacatatgcatgaatttgtttgaatgtgttttatttttgtacagcaatgc
tagaagaaaaacaaaagagtagtctctaattgagatctggttaagagtat
agtacatcttcagccatgtccgacctatagctgctaattggtctgatatt
agcaggttcattcagtttgaacaaaaggctgaatatactgctcaaattat
gacttccataagactatacactaggtactacagaatatccagatggcaac
agctgtctactgaatgtgtgacttctccaggtatgtgttctgcctgacat
tcatgagttcagagtaccttgtacaaagtgcataccagtcttttaccagt
gccaaaacagatgttgagagacagcaaataagttatccaggatctcacac
tcagatcagtctccagtctaatcctcctaattcacacagatttttagtga
tatagatttttatttatgtgtgtacatgg
gaattctccctctctttttagagaggagattttggaatggattcattaaa
aaggaaaacctggcatgttagaagttaggtcttttctctttcaaaattgt
aattgggtaacctggcattctgcataactcaggagctccccttgctgtgt
cgtgggtgatgggagaaattaagcagtatgtgatacagagatgacacagg
gcatttagagcaaaagcagagaacgaaatgaaagtgaggaaacatgaaca
taatcacccaataagaagatactgcacttgtgaagagatgaggccagtgt
cgccagctcttctgggatggctttctcatctgaatcacaatgagagtgga
gtactctagaagacattctatcaaataacgatagacctgctaagaggctg
tcacagttgtaagacctgtttctggtggacagacaaaccagattaacatg
aacttgaaaaggaaaaaaaagctttttttttttaaatacttaatttatta
ttatggctttttgcaacatggcaaaacattacagctcgaagcagacagca
tctcctcatagaggaggaagaagttttgcagtcaaatcaaatcataatca
agaggtcactggtagacggttctattatgaaaatgattttgcaactttat
gaatttcagaaacaatagattccttgagaaaaagaaaaagacaggcagaa
tctgtggatctactagctgaataaaggaattgaggtccacctaggcttat
ggcactaaacataaagactgcaaaacaattgtagaacttagagaatcata
gacgtttgccaatcaataagagttcatcatatgtctgattaccagaaaag
gattattaagtatgcagtgagggaacgaagcagagtaaaatagaaaatgt
ctttcatttctctttgccatcaatttccttcttctgtcaccggagtataa
ggaaaggatgagcctcggggttgaagatcatgttcctatggaagaaggtc
ttcatcgggaaatcagtacaatactggaggaggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53737191_53738226
seq2: B6Ng01-159C17.b_47_1075 (reverse)

seq1  CCATGTACACACATACATTAAAAATCTAATTAATTCACTAAAAATTCTGT  50
      ||||||||||||||| | ||||||||||  ||  |||||||||| |||| 
seq2  CCATGTACACACATA-AATAAAAATCTA--TA--TCACTAAAAA-TCTG-  43

seq1  TGTGAATTAGGAGGATTAGACTGGAGGCTGATCTGAGTGTGAGATCCTGG  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTGAATTAGGAGGATTAGACTGGAGACTGATCTGAGTGTGAGATCCTGG  93

seq1  ATAACTTATTTGCTGTCTCTCAACATCTGTTTTGGCACTGGTAAAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATTTGCTGTCTCTCAACATCTGTTTTGGCACTGGTAAAAGACT  143

seq1  GGTATGCACTTTGTACAAGGTACTCTGAACTCATGAATGTCAGGCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCACTTTGTACAAGGTACTCTGAACTCATGAATGTCAGGCAGAAC  193

seq1  ACATACCTGGAGAAGTCACACATTCAGTAGACAGCTGTTGCCATCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTGGAGAAGTCACACATTCAGTAGACAGCTGTTGCCATCTGGAT  243

seq1  ATTCTGTAGTACCTAGTGTATAGTCTTATGGAAGTCATAATTTGAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGTACCTAGTGTATAGTCTTATGGAAGTCATAATTTGAGCAGT  293

seq1  ATATTCAGCCTTTTGTTCAAACTGAATGAACCTGCTAATATCAGACCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGCCTTTTGTTCAAACTGAATGAACCTGCTAATATCAGACCAAT  343

seq1  TAGCAGCTATAGGTCGGACATGGCTGAAGATGTACTATACTCTTAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTATAGGTCGGACATGGCTGAAGATGTACTATACTCTTAACCAG  393

seq1  ATCTCAATTAGAGACTACTCTTTTGTTTTTCTTCTAGCATTGCTGTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTAGAGACTACTCTTTTGTTTTTCTTCTAGCATTGCTGTACAA  443

seq1  AAATAAAACACATTCAAACAAATTCATGCATATGTTTAATGAAATAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACACATTCAAACAAATTCATGCATATGTTTAATGAAATAGGTG  493

seq1  GTATAATTAAGTTGACATAAAAATATCAGGAGGTTGAGTACTGTAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTAAGTTGACATAAAAATATCAGGAGGTTGAGTACTGTAGGTCA  543

seq1  TTGAGAAAGAATGCTTTAGTTATGAGGCTTACTGAGTACCTGTGCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGAATGCTTTAGTTATGAGGCTTACTGAGTACCTGTGCTGGCT  593

seq1  AGATTTATATCAACTTAACACAGGCTAGAACCATTCAAGAGAAGGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATATCAACTTAACACAGGCTAGAACCATTCAAGAGAAGGAAAGC  643

seq1  TCAGTTGAGAAAATGTCTGGATAAGATCAAGCTGTAGGCAAGCCTGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAGAAAATGTCTGGATAAGATCAAGCTGTAGGCAAGCCTGTAGC  693

seq1  GCATTTTCTTAATTAGTGATTGATGGGGGAGAGCCCAGCCGATTATGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTAATTAGTGATTGATGGGGGAGAGCCCAGCCGATTATGGGT  743

seq1  GGTGCTATTCCTGGGCTGCTGGTCCTGGTTTCTATAAGAAAGCAGATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATTCCTGGGCTGCTGGTCCTGGTTTCTATAAGAAAGCAGATTGA  793

seq1  GCAAGCCATGAAGAGGAAACGAGGAAGGAGCATTCTTCCATGACCTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCATGAAGAGGAAACGAGGAAGGAGCATTCTTCCATGACCTCCGC  843

seq1  ACCACCTCCTGCTTCCAGGTTCATGCTCAGGTTGAATCTGAGGCATCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCCTGCTTCCAGGTTCATGCTCAGGTTGAATCTGAGGCATCAGT  893

seq1  CAATAGACTGTGACGCAAGATATGTAAATCAAACAAACCCTTACCTCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACTGTGACGCAAGATATGTAAATCAAACAAACCCTTACCTCCTC  943

seq1  AAGTTGCTTTTGGCCATGGTGTTTCATCACAGCAAGAGAAAACCCTGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTTTGGCCATGGTGTTTCATCACAGCAAGAGAAAACCCTGACA  993

seq1  AGAATAGTGCCTATAACTTCTCAAGTTCTTGAATTC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTGCCTATAACTTCTCAAGTTCTTGAATTC  1029

seq1: chr10_53626337_53627384
seq2: B6Ng01-159C17.g_66_1102

seq1  GAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATTAAA  50

seq1  AAGGAAAACCTGGCATGTTAGAAGTTAGGTCTTTTCTCTTTCAAAATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACCTGGCATGTTAGAAGTTAGGTCTTTTCTCTTTCAAAATTGT  100

seq1  AATTGGGTAACCTGGCATTCTGCATAACTCAGGAGCTCCCCTTGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTAACCTGGCATTCTGCATAACTCAGGAGCTCCCCTTGCTGTGT  150

seq1  CGTGGGTGATGGGAGAAATTAAGCAGTATGTGATACAGAGATGACACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTGATGGGAGAAATTAAGCAGTATGTGATACAGAGATGACACAGG  200

seq1  GCATTTAGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACA  250

seq1  TAATCACCCAATAAGAAGATACTGCACTTGTGAAGAGATGAGGCCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCCAATAAGAAGATACTGCACTTGTGAAGAGATGAGGCCAGTGT  300

seq1  CGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGAGTGGA  350

seq1  GTACTCTAGAAGACATTCTATCAAATAACGATAGACCTGCTAAGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTAGAAGACATTCTATCAAATAACGATAGACCTGCTAAGAGGCTG  400

seq1  TCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGATTAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGATTAACATG  450

seq1  AACTTGAAAAGGAAAAAAAAGCTTTTTTTTTTTAAATACTTAATTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAAGGAAAAAAAAGCTTTTTTTTTTTAAATACTTAATTTATTA  500

seq1  TTATGGCTTTTTGCAACATGGCAAAACATTACAGCTCGAAGCAGACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTTTTGCAACATGGCAAAACATTACAGCTCGAAGCAGACAGCA  550

seq1  TCTCCTCATAGAGGAGGAAGAAGTTTTGCAGTCAAATCAAATCATAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATAGAGGAGGAAGAAGTTTTGCAGTCAAATCAAATCATAATCA  600

seq1  AGAGGTCACTGGTAGACGGTTCTATTATGAAAATGATTTTGCAACTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCACTGGTAGACGGTTCTATTATGAAAATGATTTTGCAACTTTAT  650

seq1  GAATTTCAGAAACAATAGATTCCTTGAGAAAAAGAAAAAGACAGGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGAAACAATAGATTCCTTGAGAAAAAGAAAAAGACAGGCAGAA  700

seq1  TCTGTGGATCTACTAGCTGAAT-AAGGAATTGAGGTCCACCTAGGCTTAT  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGTGGATCTACTAGCTGAATAAAGGAATTGAGGTCCACCTAGGCTTAT  750

seq1  GGCACTAAACATAAAAGACTGCAAAACAATTGTAGAACTTAGGAGAATCA  799
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GGCACTAAACAT-AAAGACTGCAAAACAATTGTAGAACTTA-GAGAATCA  798

seq1  TAGACGTTTGCCAATCAATAAGAGTTCATCATATGTCTGATTACCAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGTTTGCCAATCAATAAGAGTTCATCATATGTCTGATTACCAGAAA  848

seq1  AGGAATTATTAAGGTATGCAGTGAGGGAACGAAGCAGAGTAAAATAGAAA  899
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGG-ATTATTAA-GTATGCAGTGAGGGAACGAAGCAGAGTAAAATAGAAA  896

seq1  ATGTCTTTCATTTCTCTTTGCCATCAATTTCCTTCTTCTGTTCACGGAGT  949
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  ATGTCTTTCATTTCTCTTTGCCATCAATTTCCTTCTTCTGTCACCGGAGT  946

seq1  ATAGGGAAAGGATGAGCCTCGGTGTTGAAGATCCAGTGTTCTAGTGGAAG  999
      ||| |||||||||||||||||| ||||||||||   |||||   ||||||
seq2  ATAAGGAAAGGATGAGCCTCGGGGTTGAAGATC--ATGTTCCTATGGAAG  994

seq1  AAGGTCATCATCGGAAAATATCAAGTACAAATACCTGGAGGGAGGCAAA  1048
      |||||| ||||||| ||||    ||||| |||| ||||| |||||||||
seq2  AAGGTCTTCATCGGGAAAT---CAGTAC-AATA-CTGGA-GGAGGCAAA  1037