BAC Information

Click to search

BAC

Clone NameB6Ng01-159H16
Chromosome10 (Build37)
Map Location 31,806,732 - 31,807,852
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H16.bB6Ng01-159H16.g
ACCDH953132DH953133
length1,1581,084
definitionDH953132|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H16, 5' end.DH953133|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaaacttgaatggctgagaagcacctaaagaaatg
ttcaacatccttagtcatcagggaaatacaaattaaaacgaccatgagat
tccacctcaaatcagtcagaatggctaagatcaaaaactcaggtgacgcc
aatgctagtaaggatatgtagaaagaggaacactcatccattaatactgg
gattgcaagctggttcaatcactccagaaatcagcttagcggttcctcag
aaaaattggacattgaagtggtaaaactgaggacccagttttatcattcc
tgggcatatacccaaaagatgctccaacatataacaaagacaaatgttct
accatgttcatagcagccttatttataatagccagaagctggaaagaacc
cagatgtccctcaatacagaaaatgtggtacatttacacaatggagtact
actcagctattttttaaaaaaaataacttcatggaatttgcaggttaatg
gatggaactagaaaatatcatcctgagtgagataaccaaatcacaagaac
acacatgttatatacacactggtatagctctcctgagaggctctgccaga
acctgaaaaatagagaggcagatgctcacaaccaaccattggcctgagca
aggggtccccaatggaggagttagagaaagaactgaaggagctaaagagg
tttgaaacttataggaagaactacattatcaaccaaccagactccccaga
gctcccagggactaaaccacaaaccagagagtacacatggagggacccat
ggctccagctaaatatgtagcagaggatggccttgtctggcatcaatgag
aggggaggccgttggtattctgaaggacttatgacccagtgtagagaaat
gccaggacaggtggcagagtgggtgggtggatgggagagcacgctcaaga
gcagagggagatggagggagatcagtgttagaaaggaagcagaaaaggtg
agaaatccaaagggtctatcaatatatgtattctcagttagaaattataa
tgatcctgagtaggtaccaatcacaaggacttaaccatatgcttcctgat
atgtgaaatagccctgaattgggataccagaatataaattcatctgtcag
cgactgta
gaattcttccctgagaagaactaagaaattttcaaaagcaaaaagaagta
atattcaaacaataaaatgggagaatctttcagatggataggtgcttgca
tagagaaatgttttcaaagcagtaggtgggtactgtacataaacacaatg
caatgacctttggtttaatacaaacaacagagacatccctacagatgaga
acaaataataataactaaaagatgaagctgccagtaagaaaaatggattc
atgtggtcatagggtggcaccttcattgtgtaagcccttgccagattagc
cttatgattaaagctggacaaaggcagctttttcctcctataaatgaaaa
ttcaagtaaacaatctcactctgtactgtggaacatacatccacaatgat
gttaatcatatagatgcttgttttgaatactttttcctttttgtttttct
gccacatcggtcccatggaagaagatttttcatagatataatggagggaa
aaaaaccaaaccaaatgtcctgtgagaagcattgtcattccgatttgctt
ttgaagccaagtagctctgagcccttgaagaacatgagacaaacctgcag
ccttataataaaactttcttttgggttagcttgctcatatatttttctgt
taggaattaggagaatcctaactaatccaggcaagttcaaaaggaatagg
gctgacatgcttggagcgagtcagaaggtaaccacgggtaaaggtgcctc
tggggacttcaggcacagggcttagatgtccagtggtttgcacgaagaca
cccaggaagtttaatgtgagtttgtagaggtgatgcattgaagactttga
tgactggtggtttctacttttagtgtttgcccaagctggcctgaggagtt
gcaaacaacaatcgtacacataaacagacagttgcaaaacttcagggcag
aaatatttagagtctggcagaagagcatcatgtgttgttgttggttgttt
acatcttcccgcttgtctgttctatgctcttctgtcatggacttactagg
ttgatttttatgatattctagttgtggcttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31806732_31807852
seq2: B6Ng01-159H16.g_69_1152

seq1  GAATTCTTCCCTGAGAAGAACTAAGAAATTTTCAAAAGCAAAAAGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTGAGAAGAACTAAGAAATTTTCAAAAGCAAAAAGAAGTA  50

seq1  ATATTCAAACAATAAAATGGGAGAATCTTTCAGATGGATAGGTGCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAACAATAAAATGGGAGAATCTTTCAGATGGATAGGTGCTTGCA  100

seq1  TAGAGAAATGTTTTCAAAGCAGTAGGTGGGTACTGTACATAAACACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATGTTTTCAAAGCAGTAGGTGGGTACTGTACATAAACACAATG  150

seq1  CAATGACCTTTGGTTTAATACAAACAACAGAGACATCCCTACAGATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCTTTGGTTTAATACAAACAACAGAGACATCCCTACAGATGAGA  200

seq1  ACAAATAATAATAACTAAAAGATGAAGCTGCCAGTAAGAAAAATGGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATAATAACTAAAAGATGAAGCTGCCAGTAAGAAAAATGGATTC  250

seq1  ATGTGGTCATAGGGTGGCACCTTCATTGTGTAAGCCCTTGCCAGATTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCATAGGGTGGCACCTTCATTGTGTAAGCCCTTGCCAGATTAGC  300

seq1  CTTATGATTAAAGCTGGACAAAGGCAGCTTTTTCCTCCTATAAATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATTAAAGCTGGACAAAGGCAGCTTTTTCCTCCTATAAATGAAAA  350

seq1  TTCAAGTAAACAATCTCACTCTGTACTGTGGAACATACATCCACAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAAACAATCTCACTCTGTACTGTGGAACATACATCCACAATGAT  400

seq1  GTTAATCATATAGATGCTTGTTTTGAATACTTTTTCCTTTTTGTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCATATAGATGCTTGTTTTGAATACTTTTTCCTTTTTGTTTTTCT  450

seq1  GCCACATCGGTCCCATGGAAGAAGATTTTTCATAGATATAATGGAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATCGGTCCCATGGAAGAAGATTTTTCATAGATATAATGGAGGGAA  500

seq1  AAAAACCAAACCAAATGTCCTGTGAGAAGCATTGTCATTCCGATTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAACCAAATGTCCTGTGAGAAGCATTGTCATTCCGATTTGCTT  550

seq1  TTGAAGCCAAGTAGCTCTGAGCCCTTGAAGAACATGAGACAAACCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCAAGTAGCTCTGAGCCCTTGAAGAACATGAGACAAACCTGCAG  600

seq1  CCTTATAATAAAACTTTCTTTTGGGTTAGCTTGCTCATATATTTTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAATAAAACTTTCTTTTGGGTTAGCTTGCTCATATATTTTTCTGT  650

seq1  TAGGAATTAGGAGAATCCTAACTAATCCAGGCAAGTTCAAAAGGAATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTAGGAGAATCCTAACTAATCCAGGCAAGTTCAAAAGGAATAGG  700

seq1  GCTGACATGCTTGGAGCGAGTCAGAAGGTAACCACGGGTAAAGGTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATGCTTGGAGCGAGTCAGAAGGTAACCACGGGTAAAGGTGCCTC  750

seq1  TGGGGACTTCAGGCACAGGGCTTAGATGTCCAGTGGTTTGCACGAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTTCAGGCACAGGGCTTAGATGTCCAGTGGTTTGCACGAAGACA  800

seq1  CCCAGGAAGTTTAATGTGAGTTTGTAGAGGTGATGCATTGAAGACTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGTTTAATGTGAGTTTGTAGAGGTGATGCATTGAAGACTTTGA  850

seq1  TGACT-GTGGTTTCTACTTTTAGTGTTTTGCCCAAAGCTGGCCTGAAGGA  899
      ||||| ||||||||||||||||||| ||||||| ||||||||||| ||||
seq2  TGACTGGTGGTTTCTACTTTTAGTG-TTTGCCC-AAGCTGGCCTG-AGGA  897

seq1  GTTGCAAACAAACAAATCGTACACAATAAACAGACAGTTGCAAAAAACTT  949
      |||||||||||   |||||||||| ||||||||||||||||  |||||||
seq2  GTTGCAAACAA--CAATCGTACAC-ATAAACAGACAGTTGC--AAAACTT  942

seq1  CAGGGCAGAAAATATTTAGAAGTCTTGGCAGAAAGAGCATTCATGTGTTG  999
      |||||||| |||||||||| |||| |||||| ||||||| ||||||||||
seq2  CAGGGCAG-AAATATTTAG-AGTC-TGGCAG-AAGAGCA-TCATGTGTTG  987

seq1  TTTGTTTGTTTGTTTTACATCTTTCCCGCTTTGTCTGTTTCTTAGTGCTT  1049
       ||||| |||   |||||||| ||||||| ||||||| ||||   ||| |
seq2  -TTGTTGGTT--GTTTACATC-TTCCCGC-TTGTCTG-TTCT--ATGC-T  1028

seq1  CTTCTGTTCAATGGTCCTTACTAAGGAGTTTGAATTTTTTATTGAATAAT  1099
      |||||||   ||||  ||||||    || ||||  |||||||   |||  
seq2  CTTCTGT--CATGG-ACTTACT----AGGTTGA--TTTTTAT--GATA--  1065

seq1  TTCTAGTTTTGTGGCTCTCTCC  1121
      ||||||  |||||||| |||||
seq2  TTCTAG--TTGTGGCT-TCTCC  1084