BAC Information

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BAC

Clone NameB6Ng01-159M11
Chromosome10 (Build37)
Map Location 116,819,955 - 117,009,087
singlet/doubletdoublet
Overlap geneLOC668146
Upstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6
Downstream geneLOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159M11.bB6Ng01-159M11.g
ACCDH953339DH953340
length8941,026
definitionDH953339|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M11, 5' end.DH953340|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,819,955 - 116,820,849)(117,008,053 - 117,009,087)
sequence
gaattcctatgtaattttaaagctctcattagtttatctggggaagatgg
agtgtactcagaggcaggtcatggacccgaggagctggctcacccacttc
accctgtggattttaggggtcgaactcagtctgttagcctcagcggcggc
aagtgtctttacctaccatgataacttgccgacctcccagaatgtaattt
taatttgcaattccctagtggctaaagatattgagcacattttttcacat
atttagatactacttgtatatcctttaattctatgaattctttctgtatt
ctaaatattaattccaagtaagataaaagaactaggaaggtttgccgccc
attctgtcagctgcctcttcatccacacttggctctttcatttacggcac
aaaagcttttttattttattcaagcctatatgccactcttgcttttattc
tgaggatgagagtccttttcagaaagtctttttgaaccctgtatctcgaa
gtatttccctctagtatttttgtaggttcagctcatacttaaatgaaggc
ctctaatagtttggaattgactttcctataaggtataagacaaggatgta
attgtcctcttctgtaggtgaatattcattttttcccagaacggttggtt
tggtgacaaatctgtcttttctcccctgtagggtttttggcatctttgtc
agagtcagatggctgttggatttgcatctttatcccattttcccccttca
ggagtggtgtgcatcaattcaaggacctggtcacccggtgcctgtctaca
gggagccagagctccaatctagtataatagtatccagtaaaaaaaaaaat
ttaaaaaatatatgtgtatatatatatatgtgtgtgtgtgtgtg
gaattccagccaacagataagccctatcaggtaagtgctttgcctacagc
attaaagaactaattcctaacttaaaatacaatggctcgaccccaccccg
cccacccccttttaggtagtttgttaaagattttcacttcggtaggtggg
gaacctggttcttttcgctgtttgcctttgagcctgcttccctagtcacc
tttgctcgcaagcaagcaagcctggagcgcttaacttagctccagaaatg
gagcatcgctaagcgtctacggccgccaccaaacccagctgcttgaaatg
ttcgcacagctgcttttcgagccgagtgcaaacccttcctgctgttcaag
gagaaagtgctgactgtgagccagctcctaatgcagccacttttatgcct
tttaccaccagctcggatttcagtagaaggaaactcgagttcgggcatct
gggagcaaatgtgaaagtccacctctggttctgcaactgctccgctgcag
agttcacaacctgcttcgcctttggctctgactcatagggaacccccagg
agagccatatgtgcccaggttcctgctaggcgaacgattgcctcccctcc
ccgccttctccgtcctgaatgattggatatttggtagtctctgggctcag
agcaaatccgtcctgatgggaggctggtttcaccctgggacccagagacg
gaaaaacaaaggtggttaatgcagaaaggagagctgaagagactcgcact
gccccaccaaaaagctggtgcagagcgaggtggattgaagctcggagtgc
aaacccaagtgcaagcccaaagactttggtcctttccagcccacgctctg
accagcccggtgctctttaacatcctgccttgaagtgtttgatgcaaatg
cgattgcctccaggcaatctaataaagacatctcggcaatgtgtgatttt
tttaaataccgggttagtgagggtagacgatttcgcccctttctctctgt
cctccactcctgtgttcaaaaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116819955_116820849
seq2: B6Ng01-159M11.b_50_943

seq1  GAATTCCTATGTAATTTTAAAGCTCTCATTAGTTTATCTGGGGAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTAATTTTAAAGCTCTCATTAGTTTATCTGGGGAAGATGG  50

seq1  AGTGTACTCAGAGGCAGGTCATGGACCCGAGGAGCTGGCTCACCCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCAGAGGCAGGTCATGGACCCGAGGAGCTGGCTCACCCACTTC  100

seq1  ACCCTGTGGATTTTAGGGGTCGAACTCAGTCTGTTAGCCTCAGCGGCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGGATTTTAGGGGTCGAACTCAGTCTGTTAGCCTCAGCGGCGGC  150

seq1  AAGTGTCTTTACCTACCATGATAACTTGCCGACCTCCCAGAATGTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTTTACCTACCATGATAACTTGCCGACCTCCCAGAATGTAATTT  200

seq1  TAATTTGCAATTCCCTAGTGGCTAAAGATATTGAGCACATTTTTTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCAATTCCCTAGTGGCTAAAGATATTGAGCACATTTTTTCACAT  250

seq1  ATTTAGATACTACTTGTATATCCTTTAATTCTATGAATTCTTTCTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATACTACTTGTATATCCTTTAATTCTATGAATTCTTTCTGTATT  300

seq1  CTAAATATTAATTCCAAGTAAGATAAAAGAACTAGGAAGGTTTGCCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATTAATTCCAAGTAAGATAAAAGAACTAGGAAGGTTTGCCGCCC  350

seq1  ATTCTGTCAGCTGCCTCTTCATCCACACTTGGCTCTTTCATTTACGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCAGCTGCCTCTTCATCCACACTTGGCTCTTTCATTTACGGCAC  400

seq1  AAAAGCTTTTTTATTTTATTCAAGCCTATATGCCACTCTTGCTTTTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTTTTATTTTATTCAAGCCTATATGCCACTCTTGCTTTTATTC  450

seq1  TGAGGATGAGAGTCCTTTTCAGAAAGTCTTTTTGAACCCTGTATCTCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGAGAGTCCTTTTCAGAAAGTCTTTTTGAACCCTGTATCTCGAA  500

seq1  GTATTTCCCTCTAGTATTTTTGTAGGTTCAGCTCATACTTAAATGAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCTCTAGTATTTTTGTAGGTTCAGCTCATACTTAAATGAAGGC  550

seq1  CTCTAATAGTTTGGAATTGACTTTCCTATAAGGTATAAGACAAGGATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATAGTTTGGAATTGACTTTCCTATAAGGTATAAGACAAGGATGTA  600

seq1  ATTGTCCTCTTCTGTAGGTGAATATTCATTTTTTCCCAGAACGGTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTCTTCTGTAGGTGAATATTCATTTTTTCCCAGAACGGTTGGTT  650

seq1  TGGTGACAAATCTGTCTTTTCTCCCCTGTAGGGTTTTTGGCATCTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAAATCTGTCTTTTCTCCCCTGTAGGGTTTTTGGCATCTTTGTC  700

seq1  AGAGTCAGATGGCTGTTGGATTTGCATCTTTATCCCATTTTCCCCCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGATGGCTGTTGGATTTGCATCTTTATCCCATTTTCCCCCTTCA  750

seq1  GGAGTGGTGTGCATCAATTCAAGGACCTGGTCACCCGGTGCCTGTCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGTGTGCATCAATTCAAGGACCTGGTCACCCGGTGCCTGTCTACA  800

seq1  GGGAGCCAGAGCTCCAATCTAGTATAATAGTATCCAGTAAAAAAAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGAGCTCCAATCTAGTATAATAGTATCCAGTAAAAAAAAAAAT  850

seq1  TTAAAAAAATATATGTGTATATATATATATGTGTGTGTGTGTGTG  895
      || ||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAAAAATATATGTGTATATATATATATGTGTGTGTGTGTGTG  894

seq1: chr10_117008053_117009087
seq2: B6Ng01-159M11.g_72_1097 (reverse)

seq1  GTTCTTTTTGAACACAGGAGAGTGAGGACAGAGAGAAAAGGGCAGAAATC  50
      |||||||||||||||||||| | ||||||||||||||| |||| ||||||
seq2  GTTCTTTTTGAACACAGGAGTG-GAGGACAGAGAGAAAGGGGC-GAAATC  48

seq1  GTCCTACCCTCACATACACAGCTATTTTAAAATATAATTACACATTTGGC  100
      || |||||||||| ||  | | ||||| ||||   ||| |||||||    
seq2  GT-CTACCCTCAC-TAACCCGGTATTTAAAAA---AATCACACATTGCCG  93

seq1  AGATGTCTCTATTAGATTGCCTGGAGGCAATCGCATTTGCATCAAACACT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTTTATTAGATTGCCTGGAGGCAATCGCATTTGCATCAAACACT  143

seq1  TCAAGGCAGGATGTTAAAGAAGCACCGGGCTGGTCAGAGCGTGGGCTGGA  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAGGCAGGATGTTAAAG-AGCACCGGGCTGGTCAGAGCGTGGGCTGGA  192

seq1  AAGGACCAAAGTCTTTGGGCTTGCACTTGGGTTTGCACTCCGAGCCTTCA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGACCAAAGTCTTTGGGCTTGCACTTGGGTTTGCACTCCGAG-CTTCA  241

seq1  ATCCACCTCGCTCTGCACCAGCTTTTTGGTGGGGCAGTGCGAGTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTCGCTCTGCACCAGCTTTTTGGTGGGGCAGTGCGAGTCTCTTC  291

seq1  AGCTCTCCTTTCTGCATTAACCACCTTTGTTTTTCCGTCTCTGGGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTTTCTGCATTAACCACCTTTGTTTTTCCGTCTCTGGGTCCCA  341

seq1  GGGTGAAACCAGCCTCCCATCAGGACGGATTTGCTCTGAGCCCAGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAACCAGCCTCCCATCAGGACGGATTTGCTCTGAGCCCAGAGACT  391

seq1  ACCAAATATCCAATCATTCAGGACGGAGAAGGCGGGGAGGGGAGGCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATATCCAATCATTCAGGACGGAGAAGGCGGGGAGGGGAGGCAATC  441

seq1  GTTCGCCTAGCAGGAACCTGGGCACATATGGCTCTCCTGGGGGTTCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCCTAGCAGGAACCTGGGCACATATGGCTCTCCTGGGGGTTCCCTA  491

seq1  TGAGTCAGAGCCAAAGGCGAAGCAGGTTGTGAACTCTGCAGCGGAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGAGCCAAAGGCGAAGCAGGTTGTGAACTCTGCAGCGGAGCAGT  541

seq1  TGCAGAACCAGAGGTGGACTTTCACATTTGCTCCCAGATGCCCGAACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACCAGAGGTGGACTTTCACATTTGCTCCCAGATGCCCGAACTCG  591

seq1  AGTTTCCTTCTACTGAAATCCGAGCTGGTGGTAAAAGGCATAAAAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTCTACTGAAATCCGAGCTGGTGGTAAAAGGCATAAAAGTGGC  641

seq1  TGCATTAGGAGCTGGCTCACAGTCAGCACTTTCTCCTTGAACAGCAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGGAGCTGGCTCACAGTCAGCACTTTCTCCTTGAACAGCAGGAA  691

seq1  GGGTTTGCACTCGGCTCGAAAAGCAGCTGTGCGAACATTTCAAGCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCACTCGGCTCGAAAAGCAGCTGTGCGAACATTTCAAGCAGCTG  741

seq1  GGTTTGGTGGCGGCCGTAGACGCTTAGCGATGCTCCATTTCTGGAGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTGGCGGCCGTAGACGCTTAGCGATGCTCCATTTCTGGAGCTAA  791

seq1  GTTAAGCGCTCCAGGCTTGCTTGCTTGCGAGCAAAGGTGACTAGGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCGCTCCAGGCTTGCTTGCTTGCGAGCAAAGGTGACTAGGGAAGC  841

seq1  AGGCTCAAAGGCAAACAGCGAAAAGAACCAGGTTCCCCACCTACCGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAAGGCAAACAGCGAAAAGAACCAGGTTCCCCACCTACCGAAGT  891

seq1  GAAAATCTTTAACAAACTACCTAAAAGGGGGTGGGCGGGGTGGGGTCGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTTAACAAACTACCTAAAAGGGGGTGGGCGGGGTGGGGTCGAG  941

seq1  CCATTGTATTTTAAGTTAGGAATTAGTTCTTTAATGCTGTAGGCAAAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATTTTAAGTTAGGAATTAGTTCTTTAATGCTGTAGGCAAAGCA  991

seq1  CTTACCTGATAGGGCTTATCTGTTGGCTGGAATTC  1035
      |||||||||||||||||||||||||||||||||||
seq2  CTTACCTGATAGGGCTTATCTGTTGGCTGGAATTC  1026