BAC Information

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BAC

Clone NameB6Ng01-160K04
Chromosome10 (Build37)X (Build37)
Map Location 104,053,905 - 104,054,36351,168,981 - 51,169,428
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K04.bB6Ng01-160K04.g
ACCDH953957DH953958
length917939
definitionDH953957|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K04, 5' end.DH953958|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,905 - 104,054,363)(51,168,981 - 51,169,428)
sequence
gaattcttgactgaggaataccaaatggctgagaaacacctggaaaaaat
gttcaacatgcttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcatgtgacag
caaatgctggcaaggatgtggagaaaggggaacacttctccattgttggt
gggatttcaagcttgtacaaccacatagcaaatcagtctgggaggttcgc
agaaaattggatatagtattactggaggatccagcaatacctctcctggg
catatatccagaagatgttctaactggtaataagaacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagatcccaga
tgtccctgagcagaggactggatacagaaaatggggtacatttacacaat
ggagtattactcagctactaaaaacaatgaatttatgaaattcctaggca
aatggatggatctgaagggtatcatcctgagtgaggtaacccaatcacaa
aagaactcacataatatgcactcacttataagtggatattagcccagaaa
cttagaatacctaagagacaatttgcaaaacacatgaaactccagtagaa
ggaagactaaattgtggatacttcatccctccttagaatggggaacaaaa
tacccatgtaaggagttacagagacaaagtttggagctgatatggaaagg
aaggaccatgcagagtctgccctatctggggatccataccataatcaacc
accaaacccagacactattgcatatgcaagcaagattttgctgatgggac
cctgctatagctgtctcttgtgaggctatgccagtgcctggtaaaaacag
aagtggatgctcacagt
gaattcttctggtcagctccatccctgcaccatcttggacacaaactcag
cgggcactagctcacccaggaacttgagatcactggtgagtggaacacaa
catctgtttcaaaacacagggacaatgggcaaaggcaggccctagcacac
ccagaatcttgggatcactgagtccagtctacacaggagagcgcgtgggt
ggcagaagcaaaagatcttcttggactgggtcccttcaggccttagtcct
cagccaggaggcagaaatgagacccagacccccgggcaccttccctgtca
gagtagagtcggccttcagggagggctctgacctcaggactcaggaggtg
gaactgagctccagatttctgtgcaccttccctgcaagaggagagcttgc
ctgcagagaaagctctgaccactgggactgaggagattccttgctacttg
ttggacacccaggagtgctgacagagactaaggaaccacaggagcaacaa
actccagccagagacagatagaacatccaacaccagagattaccagatgg
caaaaggcaaacataagaatcttactaacagaaaccaggacaactaggca
tcatcagaaaccagtatgtccaccacagcgagtcatggataccacaacac
acctgaaaagcacgattcagatttaaaatcatatttcatgatgctggtag
aggattttaagaagggcatttataactcacttaaagaaatacaggagaac
actgctaaacaggtggaagtccttaaagaattacaggaaaactctgctaa
acaggtagaagtaattaaagaggaaacacaaaaatcatgtaaagaaatac
agaaaaaacacaaccaaacaggtgatggaattgaacaaaccatccaaatc
taaaatgagagtaaaacaggaataaaacccaaagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053905_104054363
seq2: B6Ng01-160K04.b_47_505 (reverse)

seq1  TAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTG  50
      ||||| |||||||||||||||||||| ||||||||||||| | |||||||
seq2  TAATA-CTCCATTGTGTAAATGTACCCCATTTTCTGTATCCAGTCCTCTG  49

seq1  TTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCT  100
       | |||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  CTCAGGGACATCTGGGATCTTTCCAGCTTCTGGCTATTATAAATAAGGCT  99

seq1  GCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTC  150
      |||||||| |||||||||||||||| ||| ||||| ||| |  |||||||
seq2  GCTATGAACATAGTGGAGCATGTGTTCTTATTACCAGTTAGAACATCTTC  149

seq1  TGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGT  200
      ||||||||||||||| ||||||||||||||||||||| ||| |||||| |
seq2  TGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAATACTATAT  199

seq1  CCAATTTTCTGACGAACC-GCCAGACGGATTTCCAGAGTGGTTGTACAAG  249
      ||||||||||| ||||||  |||||| ||||| |   |||||||||||||
seq2  CCAATTTTCTG-CGAACCTCCCAGACTGATTTGCTATGTGGTTGTACAAG  248

seq1  CCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTC  299
      | || ||||||||||||||||||| |||||||| ||||||||||||||| 
seq2  CTTGAAATCCCACCAACAATGGAGAAGTGTTCCCCTTTCTCCACATCCTT  298

seq1  GCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGT  349
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GCCAGCATTTGCTGTCACATGAATTTTTGATCTTAGCCATTCTGACTGGT  348

seq1  GTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAA  398

seq1  GGATGTTGAACATTTTTT-CAGGTGCTTCTCTGCCATTCGGTATTCCTCA  448
      | |||||||||||||||| |||||| ||||| |||||| |||||||||||
seq2  GCATGTTGAACATTTTTTCCAGGTGTTTCTCAGCCATTTGGTATTCCTCA  448

seq1  GGTGAGAATTC  459
      |   |||||||
seq2  GTCAAGAATTC  459

seq1: chrX_51168981_51169428
seq2: B6Ng01-160K04.g_123_258

seq1  CTAGCACACCCAGGATCTTGGGATCACTGGTGAGTGGAACACAACATCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCAAAATATCTCAGAGGGCTTGTGCCAGCAGGAACAGGGGCAAAGGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCGCCCAACCAGTGCTGGGGTTCATTCTGGTCATCTCCAGCCCCCCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGCCATCTTGGGCATGAACTTGACAGAGGGTCCCAAGGTCCCCAGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GACTCTCCATGCTGCAGGCGCCCTAGCACATTAAGGATCTTAAGGTCACT  250
                            ||||| ||   |||| ||| || |||||
seq2  ----------------------CTAGCTCACCCAGGAACTTGAGATCACT  28

seq1  GATGAGTAGAACACAAAATCTGTCCCAAAAAACCCAGAGGATATTGTGCC  300
      | ||||| |||||||| ||||||  ||||                     
seq2  GGTGAGTGGAACACAACATCTGTTTCAAA---------------------  57

seq1  AGCAGAAACAGGAATAAAGGAAACCCACCTAACTAGCAGCTGGGATTCAT  350
           | ||||| | ||                                 
seq2  -----ACACAGGGACAA---------------------------------  69

seq1  TCTGGTGGCTCCAGCCCAGCACCATCTTGGGCATGAAATGGCAGGCCCTG  400
                                 |||||    || |||||||||| 
seq2  ---------------------------TGGGC----AAAGGCAGGCCCTA  88

seq1  GCACACCCAAGATCTTGGGAGCACTGAGACCAGTCTACACAGGAGAGC  448
      |||||||||  ||||||||| ||||||| |||||||||||||||||||
seq2  GCACACCCAGAATCTTGGGATCACTGAGTCCAGTCTACACAGGAGAGC  136