BAC Information

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BAC

Clone NameB6Ng01-160M03
Chromosome10 (Build37)
Map Location 64,788,224 - 64,903,348
singlet/doubletdoublet
Overlap geneLOC665206
Upstream geneCtnna3
Downstream geneLOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M03.bB6Ng01-160M03.g
ACCDH954049DH954050
length9961,138
definitionDH954049|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M03, 5' end.DH954050|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,902,831 - 64,903,348)(64,788,224 - 64,789,375)
sequence
gaattctaatgcttcagaatttgatcttccaaccatcctatgttctgcca
ctttgggtgtttcaatattgatgttttgtaaaagactggggctggtataa
gtctgaattccatcattatctttgtaaagtattatccttgcatgaagtaa
atggctctcttttcctttcaacaggacaaaatatatacacttgagtttta
gcagactctacctgttagctcttccaaatctttgttctctgattatactc
tgaagacatatagattttatattcgttcttcctgacagagatggacatat
tacacaggggcactgaagcatgtaatgtgaccgctcagctacctaaatta
attattaaagctacttttctctattcttgttagtaagaataatcctatgc
tttttcaagactttcacctatagccaaacatattcttatatatgctttta
acctgttgggatgctgtgatgaaatggtccaaaccagtggttttcaacct
gtgggtcatgacccctttggcaaacttctatctctaaaactatttacaat
aatattcataaatgaagtaccaatagaaaaatttatggttatggtcacca
caacatgtattaaagggccattgtattaggaaggatgagaaccactaatg
ctgaattttatagattatagaagagagaaattcttttttttattagatat
tttcttcatctacatttcaaatgctatcccaaaagtcccctataccctcc
ccctaccctgctcccctacccacccactcccacttcttggctctggtgat
tctttgtactggggcatataaagtttgcaagcccaaagggcctctcttcc
caatgatggccgactaggccatcttctgctacatatgcagctagagacat
gagctctgggggtactggttagttcatatgttgttccacctatagggttg
cagactccttcagctccttgggtactttctctagtctccattgggg
gaattccccatgtagacgtttttctgtttctccatcatttgcagattaca
ttattcatgtataaactgagttctattaagactgataaaccacttttgct
gttgtctcttctttcaacatcagttttaataatatgtccatgagtggact
ttttatgatctttgactcaatacagattaccatactgcattcagtaatta
tgtctttctgttctcctctaaaattactttcttgatgtcttcctggtttc
tagttccttgtctaacctggaaatattgaaagtaatatcactgcaatgat
ttaacccaggtcctagaggggagaaacatgctttggtcatcacctcatgc
ctgcaggtaggttgataccaaatattgaattgctcttatattccataaat
aaaggaacagatgatcctctcaacattcattagagaaaatttaagactcc
ccactcaaaatatcattcacacttattatctttctctagatctgtcacat
aatattaccactgtaaaacacagttgatgagattgacatcgctccacaac
caacttgtaaacccctggcagtgagcactgcctggccttctttgtttccc
actgattttcgctaaacttggagtctgatttgcagcccacagcctatacc
tatttaagttatgccccattatctgaaaattaatgcacagaattggtgaa
ttggtctcaatgaatctgcttaagtttgctgtaagcctccacaggaatct
cattatctctctgtctttgtgaagtcaatagctgtaggaagcttctgcct
cagatcaaagttcattcaagcctgtctatgtttattgccatctcgaagac
acattgttcttgtcttcatctctttctacctactgggatttcacatgtta
aatactaagtgtttttcataggagttatattgtatcttttgtcaagctgt
tctgtgttagaggtggctaatgatatgtgctaaatttagacaggtagctg
atgatggtagctaaacctcgacagaatgttggggaaacagatggactctg
gagcctcctatacctccttcccctacccatgatcaggagctttataaatc
tggttcactatccgagcctctcagaggggagctatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64902831_64903348
seq2: B6Ng01-160M03.b_44_561 (reverse)

seq1  AAAGGGGTCATGACCCACAGGTTGAAAACCACTGGTTTGGACCATTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTCATGACCCACAGGTTGAAAACCACTGGTTTGGACCATTTCAT  50

seq1  CACAGCATCCCAACAGGTTAAAAGCATATATAAGAATATGTTTGGCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATCCCAACAGGTTAAAAGCATATATAAGAATATGTTTGGCTATA  100

seq1  GGTGAAAGTCTTGAAAAAGCATAGGATTATTCTTACTAACAAGAATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGTCTTGAAAAAGCATAGGATTATTCTTACTAACAAGAATAGAG  150

seq1  AAAAGTAGCTTTAATAATTAATTTAGGTAGCTGAGCGGTCACATTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCTTTAATAATTAATTTAGGTAGCTGAGCGGTCACATTACATG  200

seq1  CTTCAGTGCCCCTGTGTAATATGTCCATCTCTGTCAGGAAGAACGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGCCCCTGTGTAATATGTCCATCTCTGTCAGGAAGAACGAATAT  250

seq1  AAAATCTATATGTCTTCAGAGTATAATCAGAGAACAAAGATTTGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATATGTCTTCAGAGTATAATCAGAGAACAAAGATTTGGAAGAG  300

seq1  CTAACAGGTAGAGTCTGCTAAAACTCAAGTGTATATATTTTGTCCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTAGAGTCTGCTAAAACTCAAGTGTATATATTTTGTCCTGTTG  350

seq1  AAAGGAAAAGAGAGCCATTTACTTCATGCAAGGATAATACTTTACAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGAGAGCCATTTACTTCATGCAAGGATAATACTTTACAAAGA  400

seq1  TAATGATGGAATTCAGACTTATACCAGCCCCAGTCTTTTACAAAACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGGAATTCAGACTTATACCAGCCCCAGTCTTTTACAAAACATCA  450

seq1  ATATTGAAACACCCAAAGTGGCAGAACATAGGATGGTTGGAAGATCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAACACCCAAAGTGGCAGAACATAGGATGGTTGGAAGATCAAAT  500

seq1  TCTGAAGCATTAGAATTC  518
      ||||||||||||||||||
seq2  TCTGAAGCATTAGAATTC  518

seq1: chr10_64788224_64789375
seq2: B6Ng01-160M03.g_68_1205

seq1  GAATTCCCCATGTAGACGTTTTTCTGTTTCTCCATCATTTGCAGATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATGTAGACGTTTTTCTGTTTCTCCATCATTTGCAGATTACA  50

seq1  TTATTCATGTATAAACTGAGTTCTATTAAGACTGATAAACCACTTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGTATAAACTGAGTTCTATTAAGACTGATAAACCACTTTTGCT  100

seq1  GTTGTCTCTTCTTTCAACATCAGTTTTAATAATATGTCCATGAGTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCTTCTTTCAACATCAGTTTTAATAATATGTCCATGAGTGGACT  150

seq1  TTTTATGATCTTTGACTCAATACAGATTACCATACTGCATTCAGTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATCTTTGACTCAATACAGATTACCATACTGCATTCAGTAATTA  200

seq1  TGTCTTTCTGTTCTCCTCTAAAATTACTTTCTTGATGTCTTCCTGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTGTTCTCCTCTAAAATTACTTTCTTGATGTCTTCCTGGTTTC  250

seq1  TAGTTCCTTGTCTAACCTGGAAATATTGAAAGTAATATCACTGCAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTTGTCTAACCTGGAAATATTGAAAGTAATATCACTGCAATGAT  300

seq1  TTAACCCAGGTCCTAGAGGGGAGAAACATGCTTTGGTCATCACCTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCAGGTCCTAGAGGGGAGAAACATGCTTTGGTCATCACCTCATGC  350

seq1  CTGCAGGTAGGTTGATACCAAATATTGAATTGCTCTTATATTCCATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTAGGTTGATACCAAATATTGAATTGCTCTTATATTCCATAAAT  400

seq1  AAAGGAACAGATGATCCTCTCAACATTCATTAGAGAAAATTTAAGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACAGATGATCCTCTCAACATTCATTAGAGAAAATTTAAGACTCC  450

seq1  CCACTCAAAATATCATTCACACTTATTATCTTTCTCTAGATCTGTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAAAATATCATTCACACTTATTATCTTTCTCTAGATCTGTCACAT  500

seq1  AATATTACCACTGTAAAACACAGTTGATGAGATTGACATCGCTCCACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACCACTGTAAAACACAGTTGATGAGATTGACATCGCTCCACAAC  550

seq1  CAACTTGTAAACCCCTGGCAGTGAGCACTGCCTGGCCTTCTTTGTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTAAACCCCTGGCAGTGAGCACTGCCTGGCCTTCTTTGTTTCCC  600

seq1  ACTGATTTTCGCTAAACTTGGAGTCTGATTTGCAGCCCACAGCCTATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTCGCTAAACTTGGAGTCTGATTTGCAGCCCACAGCCTATACC  650

seq1  TATTTAAGTTATGCCCCATTATCTGAAAATTAATGCACAGAATTGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTTATGCCCCATTATCTGAAAATTAATGCACAGAATTGGTGAA  700

seq1  TTGGTCTCAATGAATCTGCTTAAGTTTGCTGTAAGCCTCCACAGGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCAATGAATCTGCTTAAGTTTGCTGTAAGCCTCCACAGGAATCT  750

seq1  CATTATCTCTCTGTCTTTGTGAAGTCAATAGCTGTAGGAAGCTTCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTCTCTGTCTTTGTGAAGTCAATAGCTGTAGGAAGCTTCTGCCT  800

seq1  CAGATCAAAGTTCATTCAAGCCTGTCTATGTTTATTGCCATCTCGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAAGTTCATTCAAGCCTGTCTATGTTTATTGCCATCTCGAAGAC  850

seq1  ACATTGTTCTTGTCTTCATCTCTTTTCTACCTACTGGGATTTCACATGTT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACATTGTTCTTGTCTTCATCTC-TTTCTACCTACTGGGATTTCACATGTT  899

seq1  AAATACTAAGTGTTTTTCCATAGGGAGTTTATATTGTATCTTTTGTCAAG  950
      ||||||||||||||||| |||| |||| ||||||||||||||||||||||
seq2  AAATACTAAGTGTTTTT-CATA-GGAG-TTATATTGTATCTTTTGTCAAG  946

seq1  CTGTTCTGTGTTAGGAGGTGGCTAATGATATGTGCTAAATTTAGAACCAG  1000
      ||||||||||||| |||||||||||||||||||||||||||||||  |||
seq2  CTGTTCTGTGTTA-GAGGTGGCTAATGATATGTGCTAAATTTAGA--CAG  993

seq1  GTAGCTGATGATGGTAGCTAAAACTCGACAGAATGTT-GGGAAACAGATG  1049
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  GTAGCTGATGATGGTAGCTAAACCTCGACAGAATGTTGGGGAAACAGATG  1043

seq1  GACTCT-GAGCTTCCTATA-CTCCTTCCCCTTACTCATGATTCAGTAGCT  1097
      |||||| |||| ||||||| |||||||||| ||| ||||| |||| ||||
seq2  GACTCTGGAGCCTCCTATACCTCCTTCCCC-TACCCATGA-TCAGGAGCT  1091

seq1  TTATAACATTCCTGAGTTTCAATCTACTCAGACTCTCAGAAGTGGAAGCT  1147
      |||||| ||  ||  | |||| | | |  || ||||||||   || ||||
seq2  TTATAA-AT--CT--GGTTCACTAT-CCGAGCCTCTCAGA--GGGGAGCT  1133

seq1  ATCTT  1152
      |||||
seq2  ATCTT  1138