BAC Information

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BAC

Clone NameB6Ng01-160N16
Chromosome6 (Build37)10 (Build37)
Map Location 145,953,348 - 145,953,60368,446,217 - 68,446,393
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N16.bB6Ng01-160N16.g
ACCDH954120DH954121
length25678
definitionDH954120|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N16, 5' end.DH954121|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,953,348 - 145,953,603)(68,446,217 - 68,446,393)
sequence
tcccagccccctttcagtttgcttctgagtttggaaggaagcagcgggca
gtttgggtgacttgcccagggccacaaaatttgccactagtagggtttgg
gatgacacaggggttcatcccaggctcacagaccttcctctgtcaggctt
accttcctttggttccgctacagggatattagagttactgggaagaagaa
aatggagagaaacaggaagaggaggaagagagggagaggggaaggaagaa
gaggag
ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgagcatgtatgtgtgtgtgt
gagagcatgtgtatatgtgagcatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145953348_145953603
seq2: B6Ng01-160N16.b_52_307 (reverse)

seq1  CTCCTCTTCTTCCTTCCCCTCTCCCTCTCTTCCTCCTCTTCCTGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCTTCCTTCCCCTCTCCCTCTCTTCCTCCTCTTCCTGTTTCTC  50

seq1  TCCATTTTCTTCTTCCCAGTAACTCTAATATCCCTGTAGCGGAACCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTTCTTCCCAGTAACTCTAATATCCCTGTAGCGGAACCAAAG  100

seq1  GAAGGTAAGCCTGACAGAGGAAGGTCTGTGAGCCTGGGATGAACCCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAAGCCTGACAGAGGAAGGTCTGTGAGCCTGGGATGAACCCCTGT  150

seq1  GTCATCCCAAACCCTACTAGTGGCAAATTTTGTGGCCCTGGGCAAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCCAAACCCTACTAGTGGCAAATTTTGTGGCCCTGGGCAAGTCAC  200

seq1  CCAAACTGCCCGCTGCTTCCTTCCAAACTCAGAAGCAAACTGAAAGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGCCCGCTGCTTCCTTCCAAACTCAGAAGCAAACTGAAAGGGGG  250

seq1  CTGGGA  256
      ||||||
seq2  CTGGGA  256

seq1: chr10_68446217_68446393
seq2: B6Ng01-160N16.g_75_152 (reverse)

seq1  ACACATGCTCATGCATGCACACACACATATACACATGCACATATGTACAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACGGGAATGTACACACATATGCATGCACACATGCATACATAT--ACAT  98
                                  ||||||||  ||||||  ||||
seq2  ----------------------------ACACATGCTCACATATACACAT  22

seq1  ACACTCACACACACACATGCATGCACATACACACGAACACACAACACACA  148
       | ||||||||||||||| ||||| || |||||                 
seq2  GCTCTCACACACACACATACATGCTCACACACA-----------------  55

seq1  CATGCGCACACAAACACACACACACAGAG  177
            |||||| ||||||||||||||||
seq2  ------CACACACACACACACACACAGAG  78