BAC Information

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BAC

Clone NameB6Ng01-161E02
Chromosome10 (Build37)
Map Location 99,787,697 - 99,942,834
singlet/doubletdoublet
Overlap geneLOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3
Upstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007
Downstream gene4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E02.bB6Ng01-161E02.g
ACCDH954422DH954423
length1,1021,024
definitionDH954422|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E02, 5' end.DH954423|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,787,697 - 99,788,815)(99,941,811 - 99,942,834)
sequence
gaattctctcctctgactctggcacacagagactgggctcaggtcactgg
ttttgctcctaacaataatttcatttttttttaatgaaattgtggtgtta
aggaactgtgtttgcattggaatcattctgagtagaccaggatggtattt
gactagctctctcatttgcaatacggttagaagttacagctatatatacc
agttaaattcaatcctttgtgggtctacactgatcaagttgaaacttctt
atttttcctaattaagttctcaggatctcttccttatgccttaatgatgc
aatatgctaaaaggaaagatgtaattttacataaaataaattttgttttc
aaatcaggtaccttggatacaagggcaaattccatgaataccatggctga
aaaagtggacatgtcattggaagacatccttaagctgaacaagatccagc
aaggacatcatgactgacctgattcccaggtgaatcgaggcattgggcct
aagagccagctttcacccatggtggaaggaacaggctggcaccatactgc
agacaaaaacaacttccagacaagtggcagcatgacctatttattggaga
ttacatgggtcaaaaccacgaggatactggtggaaagtttttcatgtcaa
atctgaagttcagagtgtcagatgctgatattcaggtactctttgctgaa
tttggatcgttgaaaaattcttctgtgcactatgatcacagtggaagatg
tacaggggcagcacatgtgcactttgaaaggaaagcagaagccctgaagg
ctatgagagattacaatggcacctctttggatggcctacatatgaacatc
cagcttgccacaacacagattgatagacaaggaagacatacacaaagcaa
aaataggggcggcatgacaagaaaccctggctctgagtattagtgtgagg
caccaatagatgacacttgagcagctagggaagagggagagctagcagca
gagtcaaaatgcagcatagcagcgtcacaacagcagcagcagcatagagc
aaagcaatagcagcagtagcagcagcagcagcagcgcagcagcagcgcag
ca
gaattcatcctttaattagaaacaccatcagctttggggtgtgtgagtta
acaggatcacacaactccataaccttcagaggtgggaagtcgctcccgag
tcaagatgaagctttaaataatatttttaacttgaaaactatttccaaga
cggtgcagctgtgaccctgtgctttgttgttctgaattttaagttgtctt
taagtgaatggcatttaatggttaccgaagaaagctcatgctttcacgtg
ttatgtatcacatatatagtttaagtatatcctttgagctttacattgga
ttttaaatctgtacccgtgtgagctattttattgctgactataaatttat
ttctcatttctttctgaaaacagtcagaagtcctgcagacaaactcagat
ctcaaaactgaatggtacattagtgcctatcaggagattaacagagtgcc
acagacatagctgactcagctaaacttacttcttaccaatctgaatcaaa
agtgcaaaatgactctatctgtatacagccacagtgtcagtagttgtttt
agatgtgctacgaaagattctaaattcaatttctttatttgccttttcca
agtgaccagcaagggctgctgtcacttttggcttatggagaaatcttctg
tcaggcctttggtttgtctgcttatttctttcactcttttttttttttcc
attttttattagggtatttagctcatttacattccaatgctatacccaaa
agtcccccatcccacccacccccactcccctacccacccacttccccctt
ttttgggccttggcgttcccctgtacaggggcatataaaagttgtgtgtc
caatggggcctctcttctggtgatggccgactagggcatctttgattaat
atgcagctagatcaagagttccggggtactggttagttattatgttgttc
tacttaagggatgcagatccctttagttccttgtgaattgccaagctcct
catttgggagacctgggaatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99787697_99788815
seq2: B6Ng01-161E02.b_48_1149

seq1  GAATTCTCTCCTCTGACTCTGGCACACAGAGACTGGGCTCAGGTCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTGACTCTGGCACACAGAGACTGGGCTCAGGTCACTGG  50

seq1  TTTTGCTCCTAACAATAATTTCATTTTTTTTTAATGAAATTGTGGTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCTAACAATAATTTCATTTTTTTTTAATGAAATTGTGGTGTTA  100

seq1  AGGAACTGTGTTTGCATTGGAATCATTCTGAGTAGACCAGGATGGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTGTTTGCATTGGAATCATTCTGAGTAGACCAGGATGGTATTT  150

seq1  GACTAGCTCTCTCATTTGCAATACGGTTAGAAGTTACAGCTATATATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCTCTCTCATTTGCAATACGGTTAGAAGTTACAGCTATATATACC  200

seq1  AGTTAAATTCAATCCTTTGTGGGTCTACACTGATCAAGTTGAAACTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATTCAATCCTTTGTGGGTCTACACTGATCAAGTTGAAACTTCTT  250

seq1  ATTTTTCCTAATTAAGTTCTCAGGATCTCTTCCTTATGCCTTAATGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTAATTAAGTTCTCAGGATCTCTTCCTTATGCCTTAATGATGC  300

seq1  AATATGCTAAAAGGAAAGATGTAATTTTACATAAAATAAATTTTGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTAAAAGGAAAGATGTAATTTTACATAAAATAAATTTTGTTTTC  350

seq1  AAATCAGGTACCTTGGATACAAGGGCAAATTCCATGAATACCATGGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGTACCTTGGATACAAGGGCAAATTCCATGAATACCATGGCTGA  400

seq1  AAAAGTGGACATGTCATTGGAAGACATCCTTAAGCTGAACAAGATCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGACATGTCATTGGAAGACATCCTTAAGCTGAACAAGATCCAGC  450

seq1  AAGGACATCATGACTGACCTGATTCCCAGGTGAATCGAGGCATTGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATCATGACTGACCTGATTCCCAGGTGAATCGAGGCATTGGGCCT  500

seq1  AAGAGCCAGCTTTCACCCATGGTGGAAGGAACAGGCTGGCACCATACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGCTTTCACCCATGGTGGAAGGAACAGGCTGGCACCATACTGC  550

seq1  AGACAAAAACAACTTCCAGACAAGTGGCAGCATGACCTATTTATTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAACAACTTCCAGACAAGTGGCAGCATGACCTATTTATTGGAGA  600

seq1  TTACATGGGTCAAAACCACGAGGATACTGGTGGAAAGTTTTTCATGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGGTCAAAACCACGAGGATACTGGTGGAAAGTTTTTCATGTCAA  650

seq1  ATCTGAAGTTCAGAGTGTCAGATGCTGATATTCAGGTACTCTTTGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTTCAGAGTGTCAGATGCTGATATTCAGGTACTCTTTGCTGAA  700

seq1  TTTGGATCGTTGAAAAATTCTTCTGTGCACTATGATCACAGTGGAAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCGTTGAAAAATTCTTCTGTGCACTATGATCACAGTGGAAGATG  750

seq1  TACAGGGGCAGCACATGTGCACTTTGAAAGGAAAGCAGAAGCCCTGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGCAGCACATGTGCACTTTGAAAGGAAAGCAGAAGCCCTGAAGG  800

seq1  CTATGAGAGATTACAATGGCACCTCTTTGGATGGCCTACATATGAACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAGATTACAATGGCACCTCTTTGGATGGCCTACATATGAACATC  850

seq1  CAGCTTGCCACAACACAGATTGATAGACAAGGAAGACATACACAAAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCACAACACAGATTGATAGACAAGGAAGACATACACAAAGCAA  900

seq1  AAATAGGGGCGGCATGACAAGAAACCCTGGCTCTGGAGTATTAAGTGGTG  950
      |||||||||||||||||||||||||||||||||| ||||||| ||||   
seq2  AAATAGGGGCGGCATGACAAGAAACCCTGGCTCT-GAGTATT-AGTG--T  946

seq1  GAGGCACCAATAGATGGACACTTGGAGGCAGCTAGGGAAGAGGGAGAGCT  1000
      ||||||||||||||| ||||||||   |||||||||||||||||||||||
seq2  GAGGCACCAATAGAT-GACACTTG--AGCAGCTAGGGAAGAGGGAGAGCT  993

seq1  AGCAGCAGAAGTTCAAAAATGCAGCAACAGCAGCAGCAACAACAGCAGCA  1050
      |||||||| |||   |||||||||| | |||||| |  ||||||||||||
seq2  AGCAGCAG-AGT--CAAAATGCAGC-ATAGCAGC-GTCACAACAGCAGCA  1038

seq1  GCAGCAATAGGAGCAAAAGCAATAGCAGCAGTAGCAGCAGCAGCAGCAGC  1100
      ||||| ||| |||| |||||||||||||||||||||||||||||||||||
seq2  GCAGC-ATA-GAGC-AAAGCAATAGCAGCAGTAGCAGCAGCAGCAGCAGC  1085

seq1  AGCAGCAGCAGCAGCAGCA  1119
       ||||||||||| ||||||
seq2  -GCAGCAGCAGC-GCAGCA  1102

seq1: chr10_99941811_99942834
seq2: B6Ng01-161E02.g_66_1089 (reverse)

seq1  ATGGA-TCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAG  49
      ||||| || |||| |||||||  |||||||| |  ||  | | |||||| 
seq2  ATGGATTCCCAGGTCTCCCAAATGAGGAGCTTGGCAA--TTCACAAGGAA  48

seq1  CTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAG  99
      ||||||||||||||| |||| || || ||||||||| || ||||||||||
seq2  CTAAAGGGATCTGCATCCCT-TAAGTAGAACAACATAAT-AACTAACCAG  96

seq1  TACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAG  149
      ||||||||| ||||||| |||||||||||||  ||| ||||||| |||||
seq2  TACCCCGGAACTCTTGA-TCTAGCTGCATATTAATC-AAAGATGCCCTAG  144

seq1  TCGGCCATCACTGGAAAGAGAGG-CCCATTGGACACACAAACTTTATATG  198
      |||||||||||  | |||||||| ||||||||||||||||  ||||||||
seq2  TCGGCCATCACCAG-AAGAGAGGCCCCATTGGACACACAACTTTTATATG  193

seq1  CCCCAGTACAGGGGAACGCCAGGGCC--AAAAAGGGGG-AGTGGGTGGGT  245
      |||| |||||||||||||||| ||||  |||||||||| |||||||||||
seq2  CCCCTGTACAGGGGAACGCCAAGGCCCAAAAAAGGGGGAAGTGGGTGGGT  243

seq1  AGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTT-GGTATAGCATTGGA  294
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  AGGGGAGTGGGGGTGGGTGGG-ATGGGGGACTTTTGGGTATAGCATTGGA  292

seq1  ATGTAAATGAGCTAAATA-CCTAATAAAAAATGG-AAAAAAAAAAAGAGT  342
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ATGTAAATGAGCTAAATACCCTAATAAAAAATGGAAAAAAAAAAAAGAGT  342

seq1  GAAAGAAATAAGCAGACAAACCAAAGGCCTGACGGAAGATTTCTCCATAA  392
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGAAATAAGCAGACAAACCAAAGGCCTGACAGAAGATTTCTCCATAA  392

seq1  GCCAAAAGTGACAGCAGCCCTTGCTGGTCACTTGGAAAAGGCAAATAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGTGACAGCAGCCCTTGCTGGTCACTTGGAAAAGGCAAATAAAG  442

seq1  AAATTGAATTTAGAATCTTTCGTAGCACATCTAAAACAACTACTGACACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATTTAGAATCTTTCGTAGCACATCTAAAACAACTACTGACACT  492

seq1  GTGGCTGTATACAGATAGAGTCATTTTGCACTTTTGATTCAGATTGGTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTATACAGATAGAGTCATTTTGCACTTTTGATTCAGATTGGTAA  542

seq1  GAAGTAAGTTTAGCTGAGTCAGCTATGTCTGTGGCACTCTGTTAATCTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGTTTAGCTGAGTCAGCTATGTCTGTGGCACTCTGTTAATCTCC  592

seq1  TGATAGGCACTAATGTACCATTCAGTTTTGAGATCTGAGTTTGTCTGCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCACTAATGTACCATTCAGTTTTGAGATCTGAGTTTGTCTGCAG  642

seq1  GACTTCTGACTGTTTTCAGAAAGAAATGAGAAATAAATTTATAGTCAGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGACTGTTTTCAGAAAGAAATGAGAAATAAATTTATAGTCAGCA  692

seq1  ATAAAATAGCTCACACGGGTACAGATTTAAAATCCAATGTAAAGCTCAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGCTCACACGGGTACAGATTTAAAATCCAATGTAAAGCTCAAA  742

seq1  GGATATACTTAAACTATATATGTGATACATAACACGTGAAAGCATGAGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATACTTAAACTATATATGTGATACATAACACGTGAAAGCATGAGCT  792

seq1  TTCTTCGGTAACCATTAAATGCCATTCACTTAAAGACAACTTAAAATTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGGTAACCATTAAATGCCATTCACTTAAAGACAACTTAAAATTCA  842

seq1  GAACAACAAAGCACAGGGTCACAGCTGCACCGTCTTGGAAATAGTTTTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAAAGCACAGGGTCACAGCTGCACCGTCTTGGAAATAGTTTTCA  892

seq1  AGTTAAAAATATTATTTAAAGCTTCATCTTGACTCGGGAGCGACTTCCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAATATTATTTAAAGCTTCATCTTGACTCGGGAGCGACTTCCCA  942

seq1  CCTCTGAAGGTTATGGAGTTGTGTGATCCTGTTAACTCACACACCCCAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGGTTATGGAGTTGTGTGATCCTGTTAACTCACACACCCCAAA  992

seq1  GCTGATGGTGTTTCTAATTAAAGGATGAATTC  1024
      ||||||||||||||||||||||||||||||||
seq2  GCTGATGGTGTTTCTAATTAAAGGATGAATTC  1024