BAC Information

Click to search

BAC

Clone NameB6Ng01-161G14
Chromosome10 (Build37)
Map Location 127,376,380 - 127,547,471
singlet/doubletdoublet
Overlap geneLOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
Downstream geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G14.bB6Ng01-161G14.g
ACCDH954529DH954530
length868854
definitionDH954529|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G14, 5' end.DH954530|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,546,604 - 127,547,471)(127,376,380 - 127,377,229)
sequence
gggaattctccagtccccacccacctcttccgcttagtgcctacttggcc
ctacagtggcaccagaagggacagtctccacctcactgccacatgcagat
ccagcactttgcactgagctaagaatagaatttgcagtcaccacagtgac
aagattccagctcagaaggctggggttagcccctccccataggcccagga
gggtaatatgcagtaggtaaaaatctttgcatgaccagtgctgcagaaag
aatctagctctaaaaacagttatctttgagtttgcaaaaaacaacaataa
ataaaagggactaagatactaagaagctgcaagcaggtgtatggttgggg
aaatcctacagcagggaggtaggtatgtatttgtggaaatcccaatgaaa
tagaggggtttgtgtttatctccaaagtgtcctataactgacaggaggaa
agcaagtacaagtcagaactgttctactgcaaggaaggagaaagcatttg
aaattggacttttaagcaaaatgatttgaaatccagacaaatttagaatg
ttaattgatagaactgaggcaggaagactgtcaccagttcaaagccatcc
tgggtcagaaaaagcaattacccctaaagaaaacaaaaaagaaaaagaaa
ataaacctcaacagcagcactttcatgtagaatgataaatttctagggga
ggccctgtccatcctacccttgggaacaaggacatgaggcagccccagca
ctcctcctgcacaagctaaaacatggttaccatgaccttcacccaccctc
tcacctagtccaaagttttttcattcctaaaacactttccagctgggcat
tggtggcacatgccttta
gaattcaaaaagagaattaatgcctcctgtcaatcactgcaaaccccagc
tgcaggagaggttgaagttgagcatttgtataacatcagagtggaaagta
ggaacagggaaagcatgtgggcaaggttgttattgtgtgactagagggat
ggtctcaggatctgctgctctgatcctgagctgacccagtagagattgca
taaacagaaaaccattcacttgaagaggaatagtaaaatcggtgggagag
ccgagcgttagatccaagacatggcactagggtgcagaccagcattctgg
caaggtttagcagggacagatggattgaggccataggatggagtatgtca
tccaatgtcaggaagagttggacagactggtgtgggaagccacatatgcc
attacaaggtggcgctggctaccgctggccatcacccataagtttgggta
aacaaccaatgtgcgcatgtgcagtagagtttttttgccgagtcactgtc
tggaccgaggtatgtaaatgaggtgctgaatgcatgaccaatcgggtgta
gatatgtaaatgaggcatgtaaatgaggtactggatgcatagaccaatcg
ggtggtggacatgtaaatgaggtactgaaagcataaccaatcgggtgtga
gacatgcctctcctaggcctatataaacagcgccagttctgggggcttgg
ggtcttttcgcctctggaattcagctctccccataatgtgtgcaaaaggt
tcctattgtggcatcctgttttgctgggcgaatcagacaggcacatactg
tattaaaacaaaagaccaggatgggtggtttcctgggggtccctaaatac
caca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127546604_127547471
seq2: B6Ng01-161G14.b_49_914 (reverse)

seq1  TAAAGGCATGTGCCACC-ATGCCCAGCTTGGAAAGTTGTTTTTAGGAATG  49
      ||||||||||||||||| ||||||||| ||||||||   |||||||||||
seq2  TAAAGGCATGTGCCACCAATGCCCAGC-TGGAAAGT--GTTTTAGGAATG  47

seq1  AAAAAACTTTTGGACTAGGTGAAGAGGGTGGGTGAAGGTCATGGTAACCA  99
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAAAC-TTTGGACTAGGTG-AGAGGGTGGGTGAAGGTCATGGTAACCA  95

seq1  TGTTTTTAGCTTGTGCAGGAGGAGTGCTGGGGCTGCCTCATGTCCTTGTT  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTAGCTTGTGCAGGAGGAGTGCTGGGGCTGCCTCATGTCCTTGTT  144

seq1  CCCAAGGGTAGGATGGACAGGGCCTCCCCTAGAAATTTATCATTCTACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGTAGGATGGACAGGGCCTCCCCTAGAAATTTATCATTCTACAT  194

seq1  GAAAGTGCTGCTGTTGAGG-TTATTTTCTTTTTCTTTTTTGTTTTCTTTA  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAGTGCTGCTGTTGAGGTTTATTTTCTTTTTCTTTTTTGTTTTCTTTA  244

seq1  GGGGTAATTGCTTTTTCTGACCCAGGATGGCTTTGAACTGGTGACAGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAATTGCTTTTTCTGACCCAGGATGGCTTTGAACTGGTGACAGTCT  294

seq1  TCCTGCCTCAGTTCTATCAATTAACATTCTAAATTTGTCTGGATTTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCAGTTCTATCAATTAACATTCTAAATTTGTCTGGATTTCAAA  344

seq1  TCATTTTGCTTAAAAGTCCAATTTCAAATGCTTTCTCCTTCCTTGCAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCTTAAAAGTCCAATTTCAAATGCTTTCTCCTTCCTTGCAGTA  394

seq1  GAACAGTTCTGACTTGTACTTGCTTTCCTCCTGTCAGTTATAGGACAC-T  447
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAACAGTTCTGACTTGTACTTGCTTTCCTCCTGTCAGTTATAGGACACTT  444

seq1  TGGAGATAAACACAAACCCCTCTATTTCATTGGGATTTCCACAAATACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAACACAAACCCCTCTATTTCATTGGGATTTCCACAAATACAT  494

seq1  ACCTACCTCCCTGCTGTAGGATTTCCCCAACCATACACCTGCTTGCAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTCCCTGCTGTAGGATTTCCCCAACCATACACCTGCTTGCAGCT  544

seq1  TCTTAGTATCTTAGTCCCTTTTATTTATTGTTGTTTTTTGCAAACTCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTATCTTAGTCCCTTTTATTTATTGTTGTTTTTTGCAAACTCAAA  594

seq1  GATAACTGTTTTTAGAGCTAGATTCTTTCTGCAGCACTGGTCATGCAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGTTTTTAGAGCTAGATTCTTTCTGCAGCACTGGTCATGCAAAG  644

seq1  ATTTTTACCTACTGCATATTACCCTCCTGGGCCTATGGGGAGGGGCTAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCTACTGCATATTACCCTCCTGGGCCTATGGGGAGGGGCTAAC  694

seq1  CCCAGCCTTCTGAGCTGGAATCTTGTCACTGTGGTGACTGCAAATTCTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTTCTGAGCTGGAATCTTGTCACTGTGGTGACTGCAAATTCTAT  744

seq1  TCTTAGCTCAGTGCAAAGTGCTGGATCTGCATGTGGCAGTGAGGTGGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTAGCTCAGTGCAAAGTGCTGGATCTGCATGTGGCAGTGAGGTGGAGA  794

seq1  CTGTCCCTTCTGGTGCCACTGTAGGGCCAAGTAGGCACTAAGC-AAAGAG  846
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CTGTCCCTTCTGGTGCCACTGTAGGGCCAAGTAGGCACTAAGCGGAAGAG  844

seq1  GTGGGTGGGGACTGGAGAATTC  868
      ||||||||||||||||||||||
seq2  GTGGGTGGGGACTGGAGAATTC  866

seq1: chr10_127376380_127377229
seq2: B6Ng01-161G14.g_69_922

seq1  GAATTCAAAAAGAGAATTAATGCCTCCTGTCAATCACTGCAAACCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAGAGAATTAATGCCTCCTGTCAATCACTGCAAACCCCAGC  50

seq1  TGCAGGAGAGGTTGAAGTTGAGCATTTGTATAACATCAGAGTGGAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGAGGTTGAAGTTGAGCATTTGTATAACATCAGAGTGGAAAGTA  100

seq1  GGAACAGGGAAAGCATGTGGGCAAGGTTGTTATTGTGTGACTAGAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGGAAAGCATGTGGGCAAGGTTGTTATTGTGTGACTAGAGGGAT  150

seq1  GGTCTCAGGATCTGCTGCTCTGATCCTGAGCTGACCCAGTAGAGATTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGGATCTGCTGCTCTGATCCTGAGCTGACCCAGTAGAGATTGCA  200

seq1  TAAACAGAAAACCATTCACTTGAAGAGGAATAGTAAAATCGGTGGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAAACCATTCACTTGAAGAGGAATAGTAAAATCGGTGGGAGAG  250

seq1  CCGAGCGTTAGATCCAAGACATGGCACTAGGGTGCAGACCAGCATTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCGTTAGATCCAAGACATGGCACTAGGGTGCAGACCAGCATTCTGG  300

seq1  CAAGGTTTAGCAGGGACAGATGGATTGAGGCCATAGGATGGAGTATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTAGCAGGGACAGATGGATTGAGGCCATAGGATGGAGTATGTCA  350

seq1  TCCAATGTCAGGAAGAGTTGGACAGACTGGTGTGGGAAGCCACATATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTCAGGAAGAGTTGGACAGACTGGTGTGGGAAGCCACATATGCC  400

seq1  ATTACAAGGTGGCGCTGGCTACCGCTGGCCATCACCCATAAGTTTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGGTGGCGCTGGCTACCGCTGGCCATCACCCATAAGTTTGGGTA  450

seq1  AACAACCAATGTGCGCATGTGCAGTAGAGTTTTTTTGCCGAGTCACTGCC  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACAACCAATGTGCGCATGTGCAGTAGAGTTTTTTTGCCGAGTCACTGTC  500

seq1  TGGACCGAGGTATGTAAATGAGGTGCTGAATGCATGACCAATCGGGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGAGGTATGTAAATGAGGTGCTGAATGCATGACCAATCGGGTGTA  550

seq1  GATATGTAAATGAGGCATGTAAATGAGGTACTGGATGCATAGACCAATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTAAATGAGGCATGTAAATGAGGTACTGGATGCATAGACCAATCG  600

seq1  GGT-GTGGACATGTAAATGAGGTACTGAAAGCATAACCAATCGGGTGTGA  649
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGACATGTAAATGAGGTACTGAAAGCATAACCAATCGGGTGTGA  650

seq1  GACATGCCTCTCCTAGGCCTATATAAGCAGCGCCAGTTCT-GGGGCTTGG  698
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  GACATGCCTCTCCTAGGCCTATATAAACAGCGCCAGTTCTGGGGGCTTGG  700

seq1  GGTCTTTTCGCCTCTGCAATCAAGCTCTCCCAATAAATGTGTGCAGAAGG  748
      |||||||||||||||| |||  ||||||||| || |||||||||| ||||
seq2  GGTCTTTTCGCCTCTGGAATTCAGCTCTCCCCAT-AATGTGTGCAAAAGG  749

seq1  ATCCTATTGTGGCAT-CTGTTTTGCT-GGCGAATCAGACAGGCACATACT  796
       |||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TTCCTATTGTGGCATCCTGTTTTGCTGGGCGAATCAGACAGGCACATACT  799

seq1  GGTATAAAACAAAAGACCAGGATGGTTGGTTTCCT-GGGGTCCCTAAATA  845
      |   ||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  GTATTAAAACAAAAGACCAGGATGGGTGGTTTCCTGGGGGTCCCTAAATA  849

seq1  CCACA  850
      |||||
seq2  CCACA  854