BAC Information

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BAC

Clone NameB6Ng01-161H12
Chromosome10 (Build37)
Map Location 100,646,566 - 100,802,235
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H12.bB6Ng01-161H12.g
ACCDH954570DH954571
length1,138789
definitionDH954570|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H12, 5' end.DH954571|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,801,080 - 100,802,235)(100,646,566 - 100,647,354)
sequence
gaattctgtacaaaacactaaagtaacgattagaagagggggtacaggtt
ttatttatcaacacgtaaatgttaatgggatagctgtgtgtactgtacgt
gcttgtgtgtgtttgggatgacctgcccatgtgtggacagacaaacacta
aaggaaaatgaaaggtgctgtgctctatcactttctgcaatatccctctg
agtctggagctgagctgacatgcagcaattctcaatgatcctcttgtctc
caccaccaatagtcttggactacaggttcaagggtagccacatctggctt
tgttttgtttttctttttcaatcagttctagggatccaatctcagatccc
atgcttctatatgaagacctcatatacactgagttgtctctcctcattcc
cctaatttttctttgttatctagatagaactccaaaattaagctacctag
tataaaagtatagattagtagaatgattatttacaattgctttaaaatag
aaaaaatatatatgctaatctaacagccatgtaccaactctgagaaaata
gaaactgtgtgaagaggcaccgcattctgttagcatcactatatatgaca
tacaaagaaatggacaagaaatactgagctaagcaaggcagaaggagaca
gatgttaatttctacccgaaactaataacttggctttggaaggcagcatc
atttcatagcacttcaacataaaatatgtcacagatgattgcacacttca
tttaaaatcagaactgaagaaaaggagaaaaacaatgaattcacaacctg
acaggaaaggaagagcaggaggacaaagcaaagctgttgttcagaaatta
cacttaaggcaaggcatccagcattggaaattgattatatgccctgggtt
gcttcagatattaaaacatgtttccttcctcctaggatgaaagggagatg
atcacatgagagtttctgacagtccgtgaactaaataaggaatgtttctc
ggcagctgttttcatgagatgattgaagattacaggattggggatttcta
taagagtcaaggtgtgacgttccctttaatgtgggctcaatttctgtagg
ggattggaaggatcttttactggaattgggcattattc
gaattcttcccggaattctgggtttatgaagttaaaattaattttggaat
caataagtattatctcctttctcctttatatagacacatcactattcatg
acaaatggcacatttaccctccaaaatataaagttcaaaaagtttttccc
agtcttttatctatgaaagtttaatactagaattaattatttttaattgt
gtatttagaaggtgccttttacatgtagacaataacgtttgaaactgagt
ctcaaagcaccaattttagcttaattaggtcatgtatttgttcaatggag
agtttcaatgtctctgctgcattcccgaaattacatgtccttatctgtaa
aaacagaaaatgtaactcacacatattaaacagaattactcatggttgaa
agtgataacataatatgtgtgccagaagagaatttgaatttttattgtgt
ttggtcttcctgttgttagctgttcccatttgcagaaggatacatagagc
agcaggagcttagctttctgttggttaggttcacagtctcaattatgaca
tctaactgcttctagactttttcaatttcttgtgtttaagttcttttgga
aacttgaaaggaaactcctttctacctgttgggctatcatgtccaattat
gatctgttttttgcttgaacttatatatcattttgtcaggattggttgtt
atcactaataagcctgttcttttcgatggagaggaagaaagggagtggat
ttgcagtagagaggatgtaaggagggataaggaagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100801080_100802235
seq2: B6Ng01-161H12.b_46_1183 (reverse)

seq1  GAATAAATGCCAAATCCAGTAAAAGAATTTTCTTTTCTATTCTTCTTACA  50
      ||||||   |||| ||||||||||||    || || | || |  | ||||
seq2  GAATAATGCCCAATTCCAGTAAAAGA----TCCTTCCAATCC--CCTACA  44

seq1  GAAATGTGAAGCCACATTAAAAGGGAACGTTCACACCTTTGACTCTATAT  100
      ||||| |||  ||||||| |||||||||| ||||||| |||||||| |||
seq2  GAAAT-TGAGCCCACATT-AAAGGGAACG-TCACACC-TTGACTCT-TAT  89

seq1  AGATATCCTCAATCCTGTAATCTTCAATTCATTCTTCATGGAAAACAGCT  150
      ||| |||| |||||||||||||||||| ||||   |||| ||||||||||
seq2  AGAAATCCCCAATCCTGTAATCTTCAA-TCAT--CTCAT-GAAAACAGCT  135

seq1  GCCGAGAAACATTTCCTTATTTAGTTTCACGGACTGTCAGAAACTCTCAT  200
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GCCGAGAAACA-TTCCTTATTTAG-TTCACGGACTGTCAGAAACTCTCAT  183

seq1  GTGATCATCTCCCTTTCATCCTAGGAGGAAGGAAAACATGTTTTAATATC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGATCATCTCCCTTTCATCCTAGGAGGAAGG-AAACATGTTTTAATATC  232

seq1  TGAAGCAACCCAGGGCATATAATCAATTTCCAATGCTGGATGCCTTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAACCCAGGGCATATAATCAATTTCCAATGCTGGATGCCTTGCCT  282

seq1  TAAGTGTAATTTCTGAACAACAGCTTTGCTTTGTCCTCCTGCTCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAATTTCTGAACAACAGCTTTGCTTTGTCCTCCTGCTCTTCCTT  332

seq1  TCCTGTCAGGTTGTGAATTCATTGTTTTTCTCCTTTTCTTCAGTTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAGGTTGTGAATTCATTGTTTTTCTCCTTTTCTTCAGTTCTGAT  382

seq1  TTTAAATGAAGTGTGCAATCATCTGTGACATATTTTATGTTGAAGTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAGTGTGCAATCATCTGTGACATATTTTATGTTGAAGTGCTA  432

seq1  TGAAATGATGCTGCCTTCCAAAGCCAAGTTATTAGTTTCGGGTAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATGCTGCCTTCCAAAGCCAAGTTATTAGTTTCGGGTAGAAATT  482

seq1  AACATCTGTCTCCTTCTGCCTTGCTTAGCTCAGTATTTCTTGTCCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTCTCCTTCTGCCTTGCTTAGCTCAGTATTTCTTGTCCATTTC  532

seq1  TTTGTATGTCATATATAGTGATGCTAACAGAATGCGGTGCCTCTTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTCATATATAGTGATGCTAACAGAATGCGGTGCCTCTTCACAC  582

seq1  AGTTTCTATTTTCTCAGAGTTGGTACATGGCTGTTAGATTAGCATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTTTCTCAGAGTTGGTACATGGCTGTTAGATTAGCATATATA  632

seq1  TTTTTTCTATTTTAAAGCAATTGTAAATAATCATTCTACTAATCTATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTATTTTAAAGCAATTGTAAATAATCATTCTACTAATCTATACT  682

seq1  TTTATACTAGGTAGCTTAATTTTGGAGTTCTATCTAGATAACAAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTAGGTAGCTTAATTTTGGAGTTCTATCTAGATAACAAAGAAAA  732

seq1  ATTAGGGGAATGAGGAGAGACAACTCAGTGTATATGAGGTCTTCATATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGAATGAGGAGAGACAACTCAGTGTATATGAGGTCTTCATATAG  782

seq1  AAGCATGGGATCTGAGATTGGATCCCTAGAACTGATTGAAAAAGAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGATCTGAGATTGGATCCCTAGAACTGATTGAAAAAGAAAAAC  832

seq1  AAAACAAAGCCAGATGTGGCTACCCTTGAACCTGTAGTCCAAGACTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCCAGATGTGGCTACCCTTGAACCTGTAGTCCAAGACTATTG  882

seq1  GTGGTGGAGACAAGAGGATCATTGAGAATTGCTGCATGTCAGCTCAGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAGACAAGAGGATCATTGAGAATTGCTGCATGTCAGCTCAGCTC  932

seq1  CAGACTCAGAGGGATATTGCAGAAAGTGATAGAGCACAGCACCTTTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAGGGATATTGCAGAAAGTGATAGAGCACAGCACCTTTCATT  982

seq1  TTCCTTTAGTGTTTGTCTGTCCACACATGGGCAGGTCATCCCAAACACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGTGTTTGTCTGTCCACACATGGGCAGGTCATCCCAAACACAC  1032

seq1  ACAAGCACGTACAGTACACACAGCTATCCCATTAACATTTACGTGTTGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACGTACAGTACACACAGCTATCCCATTAACATTTACGTGTTGAT  1082

seq1  AAATAAAACCTGTACCCCCTCTTCTAATCGTTACTTTAGTGTTTTGTACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCTGTACCCCCTCTTCTAATCGTTACTTTAGTGTTTTGTACA  1132

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1138

seq1: chr10_100646566_100647354
seq2: B6Ng01-161H12.g_68_856

seq1  GAATTCTTCCCGGAATTCTGGGTTTATGAAGTTAAAATTAATTTTGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCGGAATTCTGGGTTTATGAAGTTAAAATTAATTTTGGAAT  50

seq1  CAATAAGTATTATCTCCTTTCTCCTTTATATAGACACATCACTATTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGTATTATCTCCTTTCTCCTTTATATAGACACATCACTATTCATG  100

seq1  ACAAATGGCACATTTACCCTCCAAAATATAAAGTTCAAAAAGTTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCACATTTACCCTCCAAAATATAAAGTTCAAAAAGTTTTTCCC  150

seq1  AGTCTTTTATCTATGAAAGTTTAATACTAGAATTAATTATTTTTAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTATCTATGAAAGTTTAATACTAGAATTAATTATTTTTAATTGT  200

seq1  GTATTTAGAAGGTGCCTTTTACATGTAGACAATAACGTTTGAAACTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGAAGGTGCCTTTTACATGTAGACAATAACGTTTGAAACTGAGT  250

seq1  CTCAAAGCACCAATTTTAGCTTAATTAGGTCATGTATTTGTTCAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCACCAATTTTAGCTTAATTAGGTCATGTATTTGTTCAATGGAG  300

seq1  AGTTTCAATGTCTCTGCTGCATTCCCGAAATTACATGTCCTTATCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATGTCTCTGCTGCATTCCCGAAATTACATGTCCTTATCTGTAA  350

seq1  AAACAGAAAATGTAACTCACACATATTAAACAGAATTACTCATGGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAATGTAACTCACACATATTAAACAGAATTACTCATGGTTGAA  400

seq1  AGTGATAACATAATATGTGTGCCAGAAGAGAATTTGAATTTTTATTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAACATAATATGTGTGCCAGAAGAGAATTTGAATTTTTATTGTGT  450

seq1  TTGGTCTTCCTGTTGTTAGCTGTTCCCATTTGCAGAAGGATACATAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTCCTGTTGTTAGCTGTTCCCATTTGCAGAAGGATACATAGAGC  500

seq1  AGCAGGAGCTTAGCTTTCTGTTGGTTAGGTTCACAGTCTCAATTATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCTTAGCTTTCTGTTGGTTAGGTTCACAGTCTCAATTATGACA  550

seq1  TCTAACTGCTTCTAGACTTTTTCAATTTCTTGTGTTTAAGTTCTTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGCTTCTAGACTTTTTCAATTTCTTGTGTTTAAGTTCTTTTGGA  600

seq1  AACTTGAAAGGAAACTCCTTTCTACCTGTTGGGCTATCATGTCCAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGGAAACTCCTTTCTACCTGTTGGGCTATCATGTCCAATTAT  650

seq1  GATCTGTTTTTTGCTTGAACTTATATATCATTTTGTCAGGATTGGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTTTTGCTTGAACTTATATATCATTTTGTCAGGATTGGTTGTT  700

seq1  ATCACTAATAAGCCTGTTCTTTTCGATGGAGAGGAAGAAAGGGAGTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATAAGCCTGTTCTTTTCGATGGAGAGGAAGAAAGGGAGTGGAT  750

seq1  TTGCAGTAGAGAGGAGGTAAGGAGGGATAAGGAAGAGTA  789
      ||||||||||||||| |||||||||||||||||||| ||
seq2  TTGCAGTAGAGAGGATGTAAGGAGGGATAAGGAAGATTA  789