BAC Information

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BAC

Clone NameB6Ng01-161I21
Chromosome10 (Build37)
Map Location 39,097,601 - 39,254,508
singlet/doubletdoublet
Overlap geneFyn, LOC629337
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161I21.bB6Ng01-161I21.g
ACCDH954636DH954637
length1,0741,056
definitionDH954636|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I21, 5' end.DH954637|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,253,424 - 39,254,508)(39,097,601 - 39,098,671)
sequence
gaattctttcctgacatctggtgcttgacaaacaatccctcctccccaag
tgggttggcttctggtctggtacgtggtttacataaaactaatgtctttg
accctttgcagggggtgggtgaggcaggagaagagacggcttctccagca
ctgcagtcctccaggccctccagaccatttcttttctcctcagcgctctg
cagagctcagtctcaggctggtcccagctggtcctggctgggcctggcag
gcagctgctgactgagatcaggaatcgcctccatgtgcaggctctctacc
aggaggtgtctttgctctggcgctacctactcctgttgcattctgagcct
tggctcccctgctatttattatgttctccgttttccaacaccacgcctgt
tcctttgtaaaggaacttgtctgacttggagtgtcacctgatttctgctc
agaggtggctaatggagaatgagctataacttggcttctcaaagccttct
ttctccaaaagtggaacaccgtgggcctagatacttcccaaaagccaggc
aagccatgggaacagacgcccacttactagaccagcactgcacacgccaa
ctagatccactagctcccacctgagaactgtgcagctcgcgccagatcag
acaaacaaagggaagagggaggaaatgaaggtaaggagaaggctgtgcag
gcaaagatcaatcaggagccactgccctggaagtgcccaccttgtcttgc
tgtgtattcattgtcttcaatcaaccgagccaatccaaagtcagcaatct
tgcaaattagtccattccccactagaatgtttgctgatcgcagatctctg
tggatataattcatgcgctcgatgtaagccattcctgcagcaacctgtgg
aaactcagggaaggggcacagctgttacacacacaccttgagagtcgtgc
tggtacagcacagcctgaataagaccccaggccacctgtgccgccatgtt
cacaaggtttgcacttcagagctctttcttcaccatcttttagaggtcaa
gcaaacttcccatgatggaacaaa
gaattcagagactttattttctttagaacttccatctttgaggtacccca
aaatagtaggctttttagaagttgtgtaaggaacccatctgctttatatt
gaaaagtagggctttaatggaaaatttaaaatgagccagtttttctttac
cacaacaaagcctgaggaactttccccaatcctcctttcactgcccccaa
aagtgatagggtctgtacatccatgacagcctgtcccgcttaaaccccac
tgaaggcaggtgaccgtccatggattccttcattttcatatgctgttcag
ttcatggcattttcaaatactgacaagggtaaaatttggttcttgtttca
attttaatttcaccgcatgagtaacatcagagtgttttaagtagcactgg
tttctgttcccagtgtccctgcttagtctgtcagtctgaggggtgtccct
ttgctctagtttcttctctcacctagaaatgcaagcccagcatctaactg
tcctcagccgcaggaatccaagctggcggatcagcaaactctctaacttg
tggccattcttatcacttaccattggctcctcccccacagtgtcgctctg
agccagttctttgtacacctcggtctggtccatgtccttgggatatgagt
ccttgtgactctggcctgcagagaacatttgcctcactcccaggccctga
tccttgtcagcgggagctgatgttgaccctggttcctcctgtgtgctaac
cacccacagagtaggaggagaaagaccagattcctgaggatggccttgta
aacctcctccctccatgtccttccttagttacacctggctcacctcccta
ctaagccaagatggcagtcactcactgaatctttacatggctcatgtgtt
cttgctttattgcctttctggaccctggtcttccctttccttagaattct
tcccgtttgtcaaggcccatagaattcccagtctctgtattttcctacat
ggagcatcatctctcttggtacgtttcatactgatgcatgcggttactaa
agctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39253424_39254508
seq2: B6Ng01-161I21.b_48_1121 (reverse)

seq1  TTTGTTTCATTCATAGGAAGTTTGCTTGACTTCTTAAAAGATGGTGAAGG  50
      |||||| || |||| ||||||||||||||| || ||||||||||||||| 
seq2  TTTGTTCCA-TCATGGGAAGTTTGCTTGACCTC-TAAAAGATGGTGAAGA  48

seq1  AAGAGCTCTGAAGTTGCCAAACCTTGTGGACATGGCGGCACAGGTGGGCC  100
      ||||||||||||||   ||||||||||| |||||||||||||||| ||||
seq2  AAGAGCTCTGAAGT--GCAAACCTTGTGAACATGGCGGCACAGGT-GGCC  95

seq1  TGGGGTCTTAATTCAGGCTGTGGCTGTACCAGCACGGACTCTCAAGGTGT  150
      ||||||||| ||||||||||| ||||||||||||| ||||||||||||| 
seq2  TGGGGTCTT-ATTCAGGCTGT-GCTGTACCAGCAC-GACTCTCAAGGTG-  141

seq1  TGTGGTGTAACAGCTGTGCCCCCTTCCCTGGGTTTCCACAGGTTGCTGCA  200
      ||| |||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TGT-GTGTAACAGCTGTG-CCCCTTCCCTGAGTTTCCACAGGTTGCTGCA  189

seq1  GGAATGGCTTACATCGAGCGCATGAATTATATCCACAGAGATCTGCGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCTTACATCGAGCGCATGAATTATATCCACAGAGATCTGCGATC  239

seq1  AGCAAACATTCTAGTGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATTCTAGTGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG  289

seq1  GATTGGCTCGGTTGATTGAAGACAATGAATACACAGCAAGACAAGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTCGGTTGATTGAAGACAATGAATACACAGCAAGACAAGGTGGG  339

seq1  CACTTCCAGGGCAGTGGCTCCTGATTGATCTTTGCCTGCACAGCCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAGGGCAGTGGCTCCTGATTGATCTTTGCCTGCACAGCCTTCTC  389

seq1  CTTACCTTCATTTCCTCCCTCTTCCCTTTGTTTGTCTGATCTGGCGCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTCATTTCCTCCCTCTTCCCTTTGTTTGTCTGATCTGGCGCGAG  439

seq1  CTGCACAGTTCTCAGGTGGGAGCTAGTGGATCTAGTTGGCGTGTGCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGTTCTCAGGTGGGAGCTAGTGGATCTAGTTGGCGTGTGCAGTG  489

seq1  CTGGTCTAGTAAGTGGGCGTCTGTTCCCATGGCTTGCCTGGCTTTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTAGTAAGTGGGCGTCTGTTCCCATGGCTTGCCTGGCTTTTGGGA  539

seq1  AGTATCTAGGCCCACGGTGTTCCACTTTTGGAGAAAGAAGGCTTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTAGGCCCACGGTGTTCCACTTTTGGAGAAAGAAGGCTTTGAGAA  589

seq1  GCCAAGTTATAGCTCATTCTCCATTAGCCACCTCTGAGCAGAAATCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTATAGCTCATTCTCCATTAGCCACCTCTGAGCAGAAATCAGGT  639

seq1  GACACTCCAAGTCAGACAAGTTCCTTTACAAAGGAACAGGCGTGGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAAGTCAGACAAGTTCCTTTACAAAGGAACAGGCGTGGTGTTG  689

seq1  GAAAACGGAGAACATAATAAATAGCAGGGGAGCCAAGGCTCAGAATGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGGAGAACATAATAAATAGCAGGGGAGCCAAGGCTCAGAATGCAA  739

seq1  CAGGAGTAGGTAGCGCCAGAGCAAAGACACCTCCTGGTAGAGAGCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAGGTAGCGCCAGAGCAAAGACACCTCCTGGTAGAGAGCCTGCA  789

seq1  CATGGAGGCGATTCCTGATCTCAGTCAGCAGCTGCCTGCCAGGCCCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGCGATTCCTGATCTCAGTCAGCAGCTGCCTGCCAGGCCCAGCC  839

seq1  AGGACCAGCTGGGACCAGCCTGAGACTGAGCTCTGCAGAGCGCTGAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGCTGGGACCAGCCTGAGACTGAGCTCTGCAGAGCGCTGAGGAG  889

seq1  AAAAGAAATGGTCTGGAGGGCCTGGAGGACTGCAGTGCTGGAGAAGCCGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATGGTCTGGAGGGCCTGGAGGACTGCAGTGCTGGAGAAGCCGT  939

seq1  CTCTTCTCCTGCCTCACCCACCCCCTGCAAAGGGTCAAAGACATTAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCTGCCTCACCCACCCCCTGCAAAGGGTCAAAGACATTAGTTT  989

seq1  TATGTAAACCACGTACCAGACCAGAAGCCAACCCACTTGGGGAGGAGGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAACCACGTACCAGACCAGAAGCCAACCCACTTGGGGAGGAGGGA  1039

seq1  TTGTTTGTCAAGCACCAGATGTCAGGAAAGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTCAAGCACCAGATGTCAGGAAAGAATTC  1074

seq1: chr10_39097601_39098671
seq2: B6Ng01-161I21.g_70_1125

seq1  GAATTCAGAGACTTTATTTTCTTTAGAACTTCCATCTTTGAGGTACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACTTTATTTTCTTTAGAACTTCCATCTTTGAGGTACCCCA  50

seq1  AAATAGTAGGCTTTTTAGAAGTTGTGTAAGGAACCCATCTGCTTTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAGGCTTTTTAGAAGTTGTGTAAGGAACCCATCTGCTTTATATT  100

seq1  GAAAAGTAGGGCTTTAATGGAAAATTTAAAATGAGCCAGTTTTTCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGGGCTTTAATGGAAAATTTAAAATGAGCCAGTTTTTCTTTAC  150

seq1  CACAACAAAGCCTGAGGAACTTTCCCCAATCCTCCTTTCACTGCCCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAGCCTGAGGAACTTTCCCCAATCCTCCTTTCACTGCCCCCAA  200

seq1  AAGTGATAGGGTCTGTACATCCATGACAGCCTGTCCCGCTTAAACCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAGGGTCTGTACATCCATGACAGCCTGTCCCGCTTAAACCCCAC  250

seq1  TGAAGGCAGGTGACCGTCCATGGATTCCTTCATTTTCATATGCTGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGGTGACCGTCCATGGATTCCTTCATTTTCATATGCTGTTCAG  300

seq1  TTCATGGCATTTTCAAATACTGACAAGGGTAAAATTTGGTTCTTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCATTTTCAAATACTGACAAGGGTAAAATTTGGTTCTTGTTTCA  350

seq1  ATTTTAATTTCACCGCATGAGTAACATCAGAGTGTTTTAAGTAGCACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTCACCGCATGAGTAACATCAGAGTGTTTTAAGTAGCACTGG  400

seq1  TTTCTGTTCCCAGTGTCCCTGCTTAGTCTGTCAGTCTGAGGGGTGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCCCAGTGTCCCTGCTTAGTCTGTCAGTCTGAGGGGTGTCCCT  450

seq1  TTGCTCTAGTTTCTTCTCTCACCTAGAAATGCAAGCCCAGCATCTAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAGTTTCTTCTCTCACCTAGAAATGCAAGCCCAGCATCTAACTG  500

seq1  TCCTCAGCCGCAGGAATCCAAGCTGGCGGATCAGCAAACTCTCTAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCGCAGGAATCCAAGCTGGCGGATCAGCAAACTCTCTAACTTG  550

seq1  TGGCCATTCTTATCACTTACCATTGGCTCCTCCCCCACAGTGTCGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTCTTATCACTTACCATTGGCTCCTCCCCCACAGTGTCGCTCTG  600

seq1  AGCCAGTTCTTTGTACACCTCGGTCTGGTCCATGTCCTTGGGATATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTCTTTGTACACCTCGGTCTGGTCCATGTCCTTGGGATATGAGT  650

seq1  CCTTGTGACTCTGGCCTGCAGAGAACATTTGCCTCACTCCCAGGCCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGACTCTGGCCTGCAGAGAACATTTGCCTCACTCCCAGGCCCTGA  700

seq1  TCCTTGTCAGCGGGAGCTGATGTTGACCCTGGTTCCTCCTGTGTGCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCAGCGGGAGCTGATGTTGACCCTGGTTCCTCCTGTGTGCTAAC  750

seq1  CACCCACAGAGTAGGAGGAGAAAGACCAGATTCCTGAGGATGGCCTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGAGTAGGAGGAGAAAGACCAGATTCCTGAGGATGGCCTTGTA  800

seq1  AACCTCCTCCCTCCATGTCCTTCCTTAGTTACACCTGGCTCACCTCCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTCCCTCCATGTCCTTCCTTAGTTACACCTGGCTCACCTCCCTA  850

seq1  CTAAGCCAAGATGGCAGCCCACTCACTGAATCTTTAACATGGCTCATGTG  900
      |||||||||||||||||  |||||||||||||||| ||||||||||||||
seq2  CTAAGCCAAGATGGCAG-TCACTCACTGAATCTTT-ACATGGCTCATGTG  898

seq1  TTCTTGCTTTTATTGCCCTTTCCTGGACCCTGGTCTTCCCTTTCCCTTAG  950
      ||||||| |||||||||  || ||||||||||||||||||||| ||||||
seq2  TTCTTGC-TTTATTGCC--TTTCTGGACCCTGGTCTTCCCTTT-CCTTAG  944

seq1  AATTCTTCCCGTTTGTCAAGGCCCAATTAGAA-TCCCAGTCTCTGTATTT  999
      |||||||||||||||||||||||||  ||||| |||||||||||||||||
seq2  AATTCTTCCCGTTTGTCAAGGCCCA--TAGAATTCCCAGTCTCTGTATTT  992

seq1  TCTTACATTGAGCATCCATCTCTCTTGTAACGTTCTAATACATGATGCCA  1049
      || ||||| |||||| |||||||||||  ||||| | |||| ||||| ||
seq2  TCCTACATGGAGCAT-CATCTCTCTTGGTACGTT-TCATAC-TGATG-CA  1038

seq1  TGCCGTGTTACTTAAAAGCTGA  1071
      |||   ||||||  ||||||||
seq2  TGC--GGTTACT--AAAGCTGA  1056