BAC Information

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BAC

Clone NameB6Ng01-161P12
Chromosome10 (Build37)
Map Location 117,724,537 - 117,879,441
singlet/doubletdoublet
Overlap geneIltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
Upstream geneLyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193
Downstream geneLOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P12.bB6Ng01-161P12.g
ACCDH954936DH954937
length1,0951,083
definitionDH954936|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P12, 5' end.DH954937|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,878,337 - 117,879,441)(117,724,537 - 117,725,603)
sequence
gaattcagtgctgataatggtcacaggtttccttctgggcccttccactt
acttctaacaacaagtatcccctaaaagactgcatgtagccaaacactgt
tactgttacattcttttagctgcaggatgtactggcccagtcttgaaact
gcaaggccacaaataaactcaacaaagctgacgaggtttcaagtaccctc
aagtaaccatagtgagctaaaaagaaacttactctcaaattaagaaaggg
agagagaaaatcattagaatcatcccactgtgcacactgcccccttatgg
tccaggcctctgaaacatcagtctgtgctgtaatagggcttcattgctac
tttaaaaaatagctccaaacacatacgggaggcagcttgatttacactgt
gaggagaggattgaccgtagatgcttgaacattatgctaatagctatatg
tatactagtatatacatttgggacaaattataaaattctaaggatataaa
atttgcttctgttaaccattaatttaaaaaaaaaatcacaaaagagaaaa
tcctgaaaactctgagaaatatagagtctcattaaacctcaccaagcggc
tggctttgattcgattgtagtagaatttcaaaattactcctcagggtaaa
acaacttcgggggaggggggcatttcttaaacagaaacattaagaacttt
gcctcccattactttaagtgataagctgtttccctgcgtagttttggtgg
taatatccatctctcactatcactttcaagacgtctgaaggaataagaac
cattgaggtaaggatattttttatcacaactaaatgataagaaatcacaa
atcatcagcatctttgtaccttggactaatactatgcctatctttgggaa
gattgtaattgccctctaactccgttgtaagttggacagagggttaaatc
gatattgagatcataagtccattaaacacctctccagcaataagcaacgt
agcacccatcttctcaaatgactggggaacagaaaacgcagctgcgctca
ccgtagcaagtttacatcaccacgttcaacacacaagcattatta
gaattcactcggaaaagaaggcaaacatcttcagcaaatctgaagtcact
gttctactgctgtgacaagactccatgaccaaggcaacttataaaagaaa
atgtttatttgggggctaacttatagtttcaggggcttagtccccatcat
ggagaggagtccagtgggaggcacacaggcaggtatggcactgacatgct
aatatcttgtaagatatcagcagtagctaacaacttatatttataagaag
gttagcggcagagaaagcaaggctgggcatgaggttttaaaacctcaaaa
gccatccccaatgacacagctcctctaagttcagatcctggaaacagttc
taccaactacggaaccaagcatccagagtcaccagcctgtggctgtaatt
ctcatttcaaaccacagcttcagcttatccaaaaatgataacggttcgat
agtccataaagctgtttcctgcggcatcatcacttctgttgtccaggaag
aagggacagttcacacacaggctcactgctcactaccccatgctgtggga
ggctggcaaaagcaggtcactagcaagtgacctgaggaacagactcatgg
caccaggtagtagaagaaaacactctagacagacagtctctaactttgta
tacctagtgactttgaccttctatgaaaagacatacataaatcaataaat
ttccttctctctagtggcctttctgtgctactatcacgtctcctaatcta
acctttgtttttttttctctgtctctctttctccttgggtaccatggtat
agattttgaaaatacagtttctctttgtgtgttccagatatacttcccat
tttctggtacaaaggccttgtataaatgataagttccacttgttcagaga
gaacttgctcacccacacgtaatgtattacctttcttctcagaagactga
ggatgccctcccttagaaatgagcagtccttgtgttcacaaaatttcttc
atatgtctctgattccttccataaaaaatgaaaccaattttaaccaataa
aataagattgtgggtcgtggtattgttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117878337_117879441
seq2: B6Ng01-161P12.b_44_1138 (reverse)

seq1  TAATAATGCTTGTGGTTGGTTGACCGTGGTTGATGTTGACTTGCTACGGT  50
      ||||||||||||||    ||||| ||||| ||||||  ||||||||||||
seq2  TAATAATGCTTGTG---TGTTGAACGTGG-TGATGTAAACTTGCTACGGT  46

seq1  GAGCGCCAGGCTGCCGTCTCTGGTCCCCAGTCATTTTGAGAAGATGGGGT  100
      ||||||   |||||  | |||| |||||||||| ||||||||||| ||||
seq2  GAGCGC--AGCTGCGTTTTCTGTTCCCCAGTCA-TTTGAGAAGAT-GGGT  92

seq1  GCTACGTTGCTATTTGCTGGAGAGGTGTTT-ATTGACTTAATGATCTCAA  149
      |||||||||||  ||||||||||||||||| || ||||| ||||||||||
seq2  GCTACGTTGCTTATTGCTGGAGAGGTGTTTAATGGACTT-ATGATCTCAA  141

seq1  TATCGATTTAACCCTCTGTCCAACTTACTACGGAGTTAGAGGGCAATTAC  199
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TATCGATTTAACCCTCTGTCCAACTTACAACGGAGTTAGAGGGCAATTA-  190

seq1  CAATCTTCCCAAAGATAGGCATAGTATAGGTCCAAGGTACAAAGATGCTG  249
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  CAATCTTCCCAAAGATAGGCATAGTATTAGTCCAAGGTACAAAGATGCTG  240

seq1  ATGATTTTGTGATTTCTTATCATTTAGTTGTGATAAAAAATATCCTTACC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGA-TTTGTGATTTCTTATCATTTAGTTGTGATAAAAAATATCCTTACC  289

seq1  TCAATGGTTCTTATTCCTTCAGACGTCTTGAAAGTGATAGTGAGAGATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTTCTTATTCCTTCAGACGTCTTGAAAGTGATAGTGAGAGATGG  339

seq1  ATATTACCACCAAAACTACGCAGGGAAACAGCTTATCACTTAAAGTAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCACCAAAACTACGCAGGGAAACAGCTTATCACTTAAAGTAATG  389

seq1  GGAGGCAAAGTTCTTAATGTTTCTGTTTAAGAAATGCCCCCCTCCCCCGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAGTTCTTAATGTTTCTGTTTAAGAAATGCCCCCCTCCCCCGA  439

seq1  AGTTGTTTTACCCTGAGGAGTAATTTTGAAATTCTACTACAATCGAATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTTACCCTGAGGAGTAATTTTGAAATTCTACTACAATCGAATCA  489

seq1  AAGCCAGCCGCTTGGTGAGGTTTAATGAGACTCTATATTTCTCAGAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCCGCTTGGTGAGGTTTAATGAGACTCTATATTTCTCAGAGTTT  539

seq1  TCAGGATTTTCTCTTTTGTGATTTTTTTTTTAAATTAATGGTTAACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTTTCTCTTTTGTGATTTTTTTTTTAAATTAATGGTTAACAGAA  589

seq1  GCAAATTTTATATCCTTAGAATTTTATAATTTGTCCCAAATGTATATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTTATATCCTTAGAATTTTATAATTTGTCCCAAATGTATATACT  639

seq1  AGTATACATATAGCTATTAGCATAATGTTCAAGCATCTACGGTCAATCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACATATAGCTATTAGCATAATGTTCAAGCATCTACGGTCAATCCT  689

seq1  CTCCTCACAGTGTAAATCAAGCTGCCTCCCGTATGTGTTTGGAGCTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACAGTGTAAATCAAGCTGCCTCCCGTATGTGTTTGGAGCTATTT  739

seq1  TTTAAAGTAGCAATGAAGCCCTATTACAGCACAGACTGATGTTTCAGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTAGCAATGAAGCCCTATTACAGCACAGACTGATGTTTCAGAGG  789

seq1  CCTGGACCATAAGGGGGCAGTGTGCACAGTGGGATGATTCTAATGATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCATAAGGGGGCAGTGTGCACAGTGGGATGATTCTAATGATTTT  839

seq1  CTCTCTCCCTTTCTTAATTTGAGAGTAAGTTTCTTTTTAGCTCACTATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCTTTCTTAATTTGAGAGTAAGTTTCTTTTTAGCTCACTATGG  889

seq1  TTACTTGAGGGTACTTGAAACCTCGTCAGCTTTGTTGAGTTTATTTGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAGGGTACTTGAAACCTCGTCAGCTTTGTTGAGTTTATTTGTGG  939

seq1  CCTTGCAGTTTCAAGACTGGGCCAGTACATCCTGCAGCTAAAAGAATGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGTTTCAAGACTGGGCCAGTACATCCTGCAGCTAAAAGAATGTA  989

seq1  ACAGTAACAGTGTTTGGCTACATGCAGTCTTTTAGGGGATACTTGTTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACAGTGTTTGGCTACATGCAGTCTTTTAGGGGATACTTGTTGTT  1039

seq1  AGAAGTAAGTGGAAGGGCCCAGAAGGAAACCTGTGACCATTATCAGCACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGTGGAAGGGCCCAGAAGGAAACCTGTGACCATTATCAGCACT  1089

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1095

seq1: chr10_117724537_117725603
seq2: B6Ng01-161P12.g_67_1149

seq1  GAATTCACTCGGAAAAGAAGGCAAACATCTTCAGCAAATCTGAAGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGAAAAGAAGGCAAACATCTTCAGCAAATCTGAAGTCACT  50

seq1  GTTCTACTGCTGTGACAAGACTCCATGACCAAGGCAACTTATAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTGCTGTGACAAGACTCCATGACCAAGGCAACTTATAAAAGAAA  100

seq1  ATGTTTATTTGGGGGCTAACTTATAGTTTCAGGGGCTTAGTCCCCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTTGGGGGCTAACTTATAGTTTCAGGGGCTTAGTCCCCATCAT  150

seq1  GGAGAGGAGTCCAGTGGGAGGCACACAGGCAGGTATGGCACTGACATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGTCCAGTGGGAGGCACACAGGCAGGTATGGCACTGACATGCT  200

seq1  AATATCTTGTAAGATATCAGCAGTAGCTAACAACTTATATTTATAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTGTAAGATATCAGCAGTAGCTAACAACTTATATTTATAAGAAG  250

seq1  GTTAGCGGCAGAGAAAGCAAGGCTGGGCATGAGGTTTTAAAACCTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCGGCAGAGAAAGCAAGGCTGGGCATGAGGTTTTAAAACCTCAAAA  300

seq1  GCCATCCCCAATGACACAGCTCCTCTAAGTTCAGATCCTGGAAACAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCCAATGACACAGCTCCTCTAAGTTCAGATCCTGGAAACAGTTC  350

seq1  TACCAACTACGGAACCAAGCATCCAGAGTCACCAGCCTGTGGCTGTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTACGGAACCAAGCATCCAGAGTCACCAGCCTGTGGCTGTAATT  400

seq1  CTCATTTCAAACCACAGCTTCAGCTTATCCAAAAATGATAACGGTTCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCAAACCACAGCTTCAGCTTATCCAAAAATGATAACGGTTCGAT  450

seq1  AGTCCATAAAGCTGTTTCCTGCGGCATCATCACTTCTGTTGTCCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAAAGCTGTTTCCTGCGGCATCATCACTTCTGTTGTCCAGGAAG  500

seq1  AAGGGACAGTTCACACACAGGCTCACTGCTCACTACCCCATGCTGTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGTTCACACACAGGCTCACTGCTCACTACCCCATGCTGTGGGA  550

seq1  GGCTGGCAAAAGCAGGTCACTAGCAAGTGACCTGAGGAACAGACTCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAAAAGCAGGTCACTAGCAAGTGACCTGAGGAACAGACTCATGG  600

seq1  CACCAGGTAGTAGAAGAAAACACTCTAGACAGACAGTCTCTAACTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTAGTAGAAGAAAACACTCTAGACAGACAGTCTCTAACTTTGTA  650

seq1  TACCTAGTGACTTTGACCTTCTATGAAAAGACATACAT-AATCAATAAAT  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCTAGTGACTTTGACCTTCTATGAAAAGACATACATAAATCAATAAAT  700

seq1  TTCCTTCTCTCTAGTGGCCTTTCTGTGCTACTATCACGTCTCCTAATCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTCTAGTGGCCTTTCTGTGCTACTATCACGTCTCCTAATCTA  750

seq1  ACCTTTGTTTTTTTTTCTCTGTCTCTCTTTCTCCTT-GGTACCATGGTAT  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTTTGTTTTTTTTTCTCTGTCTCTCTTTCTCCTTGGGTACCATGGTAT  800

seq1  AGATTTTGAAAATACAGTTTCTCTTTGTGTGTTCCAGAATATACTTCCCA  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATTTTGAAAATACAGTTTCTCTTTGTGTGTTCCAG-ATATACTTCCCA  849

seq1  TTTTCTGGTACAAAGGCCTTGTATAAATGAT-AGTTCCACTTG-TCAGAG  896
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TTTTCTGGTACAAAGGCCTTGTATAAATGATAAGTTCCACTTGTTCAGAG  899

seq1  AG-ACTTGCTCACCCACACGTAATGTATTA-CTTTCTTCTCAGGAAGACT  944
      || ||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGAACTTGCTCACCCACACGTAATGTATTACCTTTCTTCTCA-GAAGACT  948

seq1  GAGGAATGCCCTCCC-TAGAAATGAAGCAGTTCCTTGTGTTCACAAAACA  993
      |||| |||||||||| |||||||| ||||| ||||||||||||||||  |
seq2  GAGG-ATGCCCTCCCTTAGAAATG-AGCAG-TCCTTGTGTTCACAAA--A  993

seq1  TTTCTTCATATGTCTCTGATTCCTTCCAT-AAAAATGAAACCCATTTTAT  1042
      ||||||||||||||||||||||||||||| |||||||||||| |||||| 
seq2  TTTCTTCATATGTCTCTGATTCCTTCCATAAAAAATGAAACCAATTTTAA  1043

seq1  CC-ATAAAAT-AGATTGTGG-------------TGTGTGT  1067
      || ||||||| |||||||||             |||||||
seq2  CCAATAAAATAAGATTGTGGGTCGTGGTATTGTTGTGTGT  1083