BAC Information

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BAC

Clone NameB6Ng01-162C04
Chromosome5 (Build37)10 (Build37)
Map Location 68,976,136 - 68,976,916104,054,586 - 104,055,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C04.bB6Ng01-162C04.g
ACCDH955050DH955051
length7811,043
definitionDH955050|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C04, 5' end.DH955051|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,976,136 - 68,976,916)(104,054,586 - 104,055,146)
sequence
gaattcagtggtgctcagccattaaacacttgcacagacactttgtcact
tgctatagaattttgaggttttgaatatttgtaaagcaatgataaattca
ttagagatctatacagcacaaaaagctttagcactaatttatttataaaa
gaatcttctgagctccagaatttgtttttacaattatcataattattttg
gaattcttcccttcttatgtagtaagtattttaagatttcctacagtctt
acatcagaattgatcaatgcatagaaacaataatagagtcatcaaagtat
gtttagtttttgaacacaatcatattatataaaaatgtaactaaaacatt
attaaatatttccattcattcatttgggtggataccttggcagcaattat
gtataatcttccagatatggtaatttagtgtataccacatggtgttttat
ttattcattactaggttgatatgatataaggttatttctgttttactaat
agaagtgctattacctagataggggacttgtattaaaaaaaaataagggg
gagagagagtgtgtgatataaaattaccctaactttcacactaaagggtt
ctttcccaatttatctaaactgtcttgtatttttcaagcattcatataag
gaaacatcattctttattttccaaaataataattaaataattgagtttaa
agataatagtgtgacatttataaatagcagggccaggaagcaggagtggg
tgggttggggagcagggcagggggaggatat
gaattccttaatttcattatattcatttttaatggataatggctggtatg
gtccctatagcataatgggtcctcaataaatcttatttccctgtgtatac
ttctttctgatgaaataaattggagattattgtatggatcacatttcccc
ctaaatgttcaaatgttaagactcagtcaccagagaactcctaaacctga
taaacagcttcggtgaagtagctggatataaaataaactcaaacaagtga
atggcctttctctacacaaaggataaacaggctgagaaagaaattaggga
aacaacacccttcacaatagtcacaaataatataaaataccttggcgtga
ctctaactaaggaagtgaaagatctgcatgataagaacttcaagtctttg
aagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctc
atagattggcagaatcaatttggtaaaaagggctatcttgccaaaagcaa
tctacagattcaatgcaatccccatcaaaattccaactcaattcttcaac
gaattagaaagcacaatctgcaaattcatctggaataacaaaaaacctag
gatagcaaaactcttctcaaggaaaaacgaacctctggtggaaccaccat
gcctgacctaaagctgtactacagagtaattgtgataaaaattgcatggt
actggtataggacagacaagtagaccaatggaatagaattgaagacccaa
caatgaacccacacacctatggccgattgatctttgacaagggagctaaa
accatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaa
ctggtgcttatcatgtagaagaatgcaaattgatccattcctatctcctt
gtactatggtcaaatctaaggaatcaaggaactccacataagaccagaga
cagtgaaacttacagaggagaaagtggggaaagcctcgaagatatggcac
aggggaaaaattcctaaatagaacagcaatggcttgtgctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68976136_68976916
seq2: B6Ng01-162C04.b_46_826

seq1  GAATTCAGTGGTGCTCAGCCATTAAACACTTGCACAGACACTTTGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTGCTCAGCCATTAAACACTTGCACAGACACTTTGTCACT  50

seq1  TGCTATAGAATTTTGAGGTTTTGAATATTTGTAAAGCAATGATAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGAATTTTGAGGTTTTGAATATTTGTAAAGCAATGATAAATTCA  100

seq1  TTAGAGATCTATACAGCACAAAAAGCTTTAGCACTAATTTATTTATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATCTATACAGCACAAAAAGCTTTAGCACTAATTTATTTATAAAA  150

seq1  GAATCTTCTGAGCTCCAGAATTTGTTTTTACAATTATCATAATTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTGAGCTCCAGAATTTGTTTTTACAATTATCATAATTATTTTG  200

seq1  GAATTCTTCCCTTCTTATGTAGTAAGTATTTTAAGATTTCCTACAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTTCTTATGTAGTAAGTATTTTAAGATTTCCTACAGTCTT  250

seq1  ACATCAGAATTGATCAATGCATAGAAACAATAATAGAGTCATCAAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAATTGATCAATGCATAGAAACAATAATAGAGTCATCAAAGTAT  300

seq1  GTTTAGTTTTTGAACACAATCATATTATATAAAAATGTAACTAAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTTTGAACACAATCATATTATATAAAAATGTAACTAAAACATT  350

seq1  ATTAAATATTTCCATTCATTCATTTGGGTGGATACCTTGGCAGCAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTTCCATTCATTCATTTGGGTGGATACCTTGGCAGCAATTAT  400

seq1  GTATAATCTTCCAGATATGGTAATTTAGTGTATACCACATGGTGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATCTTCCAGATATGGTAATTTAGTGTATACCACATGGTGTTTTAT  450

seq1  TTATTCATTACTAGGTTGATATGATATAAGGTTATTTCTGTTTTACTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTACTAGGTTGATATGATATAAGGTTATTTCTGTTTTACTAAT  500

seq1  AGAAGTGCTATTACCTAGATAGGGGACTTGTATTAAAAAAAAATAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCTATTACCTAGATAGGGGACTTGTATTAAAAAAAAATAAGGGG  550

seq1  GAGAGAGAGTGTGTGATATAAAATTACCCTAACTTTCACACTAAAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGTGTGTGATATAAAATTACCCTAACTTTCACACTAAAGGGTT  600

seq1  CTTTCCCAATTTATCTAAACTGTCTTGTATTTTTCAAGCATTCATATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAATTTATCTAAACTGTCTTGTATTTTTCAAGCATTCATATAAG  650

seq1  GAAACATCATTCTTTATTTTCCAAAATAATAATTAAATAATTGAGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCATTCTTTATTTTCCAAAATAATAATTAAATAATTGAGTTTAA  700

seq1  AGATAATAGTGTGACATTTATAAATAGCAGGGCCAGGAAGCAGGAGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAGTGTGACATTTATAAATAGCAGGGCCAGGAAGCAGGAGTGGG  750

seq1  TGGGTTGGGGAGCAGGGCAGGGGGAGGATAT  781
      |||||||||||||||||||||||||||||||
seq2  TGGGTTGGGGAGCAGGGCAGGGGGAGGATAT  781

seq1: chr10_104054586_104055146
seq2: B6Ng01-162C04.g_557_1111 (reverse)

seq1  TACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCA  50
      ||||||||||||||||||||||||||| |||||||||||||||||  |||
seq2  TACAGCACAAGCCATTGCTGTTCTATTTAGGAATTTTTCCCCTGT-GCCA  49

seq1  TATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCT  100
      |||||||||||| |||||| ||||| |||||| ||||||||| |||||||
seq2  TATCTTCGAGGC-TTTCCCCACTTTCTCCTCTGTAAGTTTCACTGTCTCT  98

seq1  GGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCTTAGTACAAGG  150
      ||| |||||||||||||||| || | ||||||||| ||| ||||||||||
seq2  GGTCTTATGTGGAGTTCCTTGATTC-CTTAGATTTGACCATAGTACAAGG  147

seq1  AGATAGTAATTGATCAATTCACAATCTTCTACATGATAACAGCCAGTTGT  200
      |||||| ||| ||||||||  || |||||||||||||||   ||||||||
seq2  AGATAGGAATGGATCAATTTGCATTCTTCTACATGATAAGCACCAGTTGT  197

seq1  GCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATAGTTTT  250
      |||||||  ||||||||||||||||||| ||||||||||||||| |||||
seq2  GCCAGCACCATTTGTTGAAAATGCTGTC-TTTTTTCCACTGGATGGTTTT  246

seq1  AGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTG  300
      |||||||||||||||||||||  | ||||||||||||||||||||   ||
seq2  AGCTCCCTTGTCAAAGATCAATCGGCCATAGGTGTGTGGGTTCATTGTTG  296

seq1  GATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCTATACAAGTAC  350
      | ||||||||||| ||||||||||||||||||||||| |||||| |||||
seq2  GGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC-CTATACCAGTAC  345

seq1  CATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGGAT  400
      |||||| |||||||||||||| ||||||||||||| |||||||| || ||
seq2  CATGCAATTTTTATCACAATTACTCTGTAGTACAGCTTTAGGTCAGGCAT  395

seq1  GGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCC  450
      |||| ||||||||||||||| ||| ||||||||||||| |||||||||||
seq2  GGTGGTTCCACCAGAGGTTCGTTTTTCCTTGAGAAGAG-TTTTGCTATCC  444

seq1  TAGGTTTTTTGTTATTCCAGATGAATCTGCCGATTGCCCTTTATAATTCT  500
      |||||||||||||||||||||||||| ||| |||||  |||| |||||| 
seq2  TAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTGTGCTTTCTAATTCG  494

seq1  TTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGAT  544

seq1  TGCTTTTGGCA  561
      |||||||||||
seq2  TGCTTTTGGCA  555