BAC Information

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BAC

Clone NameB6Ng01-162D13
Chromosome10 (Build37)
Map Location 121,854,963 - 121,992,214
singlet/doubletdoublet
Overlap geneAvpr1a
Upstream geneRassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275
Downstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D13.bB6Ng01-162D13.g
ACCDH955113DH955114
length1,1681,030
definitionDH955113|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D13, 5' end.DH955114|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,991,044 - 121,992,214)(121,854,963 - 121,855,998)
sequence
gaattcacatgtcctatggctagcaatttgtaatggtgtttgtggcatcc
ttaggccagagtaggcttgtcgtgggcatctccttacttttagtgtgtag
tgccatgtgacagattccttacttctaggtcagtacatgtgtgcttaaga
aaattaaaccaattttctccaaccaatgagcagcttcagtaatgctatag
aaactcttaacaccacagtgaaacctaagagatcaatgggaaaacaatac
caatgattttcctgcgatagacatgaaatttttctctcacatgataagat
tcaaaatgatgagaatttaatctcaaatatgaaatgatgataaaatcatt
aatgaaaaattactaagtacattgtttgaattatggatgcatattgtcaa
aaagccttcatagggtatttattacataatactatcatttaaagtgagtg
tccacatgaacttgatcaaggctcagacttttaaatcacaggaactaaga
aaagtaattatttgccgacaacaaagtatagcattaaataggatatatag
ttatttaaaatactttatcttttaaaaattattcttaaatatttcaaagt
gctagtaaatatttgtgattttaaataaattataagcaggtaaatatcta
atcatattaatataaaatattattgtagtaatattccagggcaatcaaaa
ctgccaatataaagaaaataaaaatatacttaagcatatgtaagtgttat
atttaccttttataatgggtatttgaaaacataagtaaacacttataaat
gcatttataatttttaaatatttgtaatgtgtaaaatatttatatgttaa
tgtaaaagttgtgtgtttacatattcctactgctgggaaaaagtaaataa
ttatgtctggtgaataaaatacttggcgctatataatattaaagagaaga
gacttttgaatttccttttctaagaaaagatttcttgtggctcagactgg
cttcaaatttgctgtgtagctgaagatgaccttgactattgattcattgt
tctcttcttcccaagagctgggattacaaggcagtgccattgctcatagc
ttcttggatgactcaaccttgtcatacagcttcaggggttgggactggta
tcttcattgcgaatttct
gaattcctggctctctctggtccacacccagctctgggtgctctcatccc
atctgaggaccagagctttgtgtggagtgtttacggcaacagaacactgg
agtagcatcttagtcaaggaaatgagttgattctatgtttttattttgta
ttccagtcaaatggcaggatggctgtgcctttaacattaggatcaattac
gttataggttctacctcatcttaggtagaagctctatagaccagacataa
atgatgagtatggtgattaccttgtgagagtatgaacctagactgctcta
atcaatgacccattcccatgtaaatgtctgggaaattaataattacactg
ggaaattaattctttcatatgattttgagctcaagaccttcatatttagt
tcagagtttcatactatgtaacgtgatctctttcagaaagaaattacatc
ataattaaatctcccttttcattacattattcccacgggattctgttctg
cctgagtcttagttagaaggaaagttattacaatattacttctgaacaaa
aaaattattttttcccttctctacatttgcctactcacagctgaaatttt
taatataatgcctcttagcctggtttggagaaaacgtcacagagaggcac
catttgttgtggttttacatgaaaattttctgaccctgaacctggtttga
tggaaatcatttgctgaggtaattatctcaaattaactaccaagctgatg
aatcgcttactacttaaaagctgtgatggggagaggagtaattgagagcg
gccttgttgggaggggatgtggacattttttttttcagcagccaatcaac
ttagaggtttttttttgttttgtttgtttgtttttgtctgttttttttct
gtgagaatctgaatgtattgtcacaaggtgaacaccagtcttatataata
cagaaaataaagggtgtaggatgtcacggggcagggcatagtactgggaa
gttacctgacacaatacatggatgacttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_121991044_121992214
seq2: B6Ng01-162D13.b_47_1214 (reverse)

seq1  AGAAATTCGCAATGGAAGATACCAGTCCCAA-CCCTG-AGCTGTATGACA  48
      ||||||||||||| ||||||||||||||||| ||||| ||||||||||||
seq2  AGAAATTCGCAAT-GAAGATACCAGTCCCAACCCCTGAAGCTGTATGACA  49

seq1  AAGTTGGAAGTCATCCAAG-AGCTATGAGCAATGGCACTGGCCTGTAATC  97
      | ||||  ||||||||||| |||||||||||||||||||| | |||||||
seq2  AGGTTG--AGTCATCCAAGAAGCTATGAGCAATGGCACTGCCTTGTAATC  97

seq1  CCAGCTCTTGGGAAGAAGAG-ACAATGAAATCAATAGTTCAAGGTCATCT  146
      |||||||||||||||||||| |||||| ||||||||| ||||||||||||
seq2  CCAGCTCTTGGGAAGAAGAGAACAATG-AATCAATAG-TCAAGGTCATCT  145

seq1  TCAGCTACACAGCAAATTTGAAGCCAGTCTGAGCCACAAGAAATCTTTTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACACAGCAAATTTGAAGCCAGTCTGAGCCACAAGAAATCTTTTC  195

seq1  TTAGAAAAGGAAAATTCAAGAGTCTCTTCTCTTTAATATTATATAGCGCC  246
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TTAGAAAAGG-AAATTCAAAAGTCTCTTCTCTTTAATATTATATAGCGCC  244

seq1  AAGTATTTTTATTCACCAGACATAATTATTTACTTTTTCCCAGCAGTAGG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTA-TTTTATTCACCAGACATAATTATTTACTTTTTCCCAGCAGTAGG  293

seq1  AATATGTAAACACACAACTTTTACATTAACATATAAATATTTTACACATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAAACACACAACTTTTACATTAACATATAAATATTTTACACATT  343

seq1  ACAAATATTTAAAAATTATAAATGCATTTATAAGTGTTTACTTATGTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTAAAAATTATAAATGCATTTATAAGTGTTTACTTATGTTTT  393

seq1  CAAATACCCATTATAAAAGGTAAATATAACACTTACATATGCTTAAGTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCCATTATAAAAGGTAAATATAACACTTACATATGCTTAAGTAT  443

seq1  ATTTTTATTTTCTTTATATTGGCAGTTTTGATTGCCCTGGAATATTACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTCTTTATATTGGCAGTTTTGATTGCCCTGGAATATTACTA  493

seq1  CAATAATATTTTATATTAATATGATTAGATATTTACCTGCTTATAATTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTTTATATTAATATGATTAGATATTTACCTGCTTATAATTTA  543

seq1  TTTAAAATCACAAATATTTACTAGCACTTTGAAATATTTAAGAATAATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCACAAATATTTACTAGCACTTTGAAATATTTAAGAATAATTT  593

seq1  TTAAAAGATAAAGTATTTTAAATAACTATATATCCTATTTAATGCTATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGATAAAGTATTTTAAATAACTATATATCCTATTTAATGCTATAC  643

seq1  TTTGTTGTCGGCAAATAATTACTTTTCTTAGTTCCTGTGATTTAAAAGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTCGGCAAATAATTACTTTTCTTAGTTCCTGTGATTTAAAAGTC  693

seq1  TGAGCCTTGATCAAGTTCATGTGGACACTCACTTTAAATGATAGTATTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGATCAAGTTCATGTGGACACTCACTTTAAATGATAGTATTAT  743

seq1  GTAATAAATACCCTATGAAGGCTTTTTGACAATATGCATCCATAATTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATACCCTATGAAGGCTTTTTGACAATATGCATCCATAATTCAA  793

seq1  ACAATGTACTTAGTAATTTTTCATTAATGATTTTATCATCATTTCATATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACTTAGTAATTTTTCATTAATGATTTTATCATCATTTCATATT  843

seq1  TGAGATTAAATTCTCATCATTTTGAATCTTATCATGTGAGAGAAAAATTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAATTCTCATCATTTTGAATCTTATCATGTGAGAGAAAAATTT  893

seq1  CATGTCTATCGCAGGAAAATCATTGGTATTGTTTTCCCATTGATCTCTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTATCGCAGGAAAATCATTGGTATTGTTTTCCCATTGATCTCTTA  943

seq1  GGTTTCACTGTGGTGTTAAGAGTTTCTATAGCATTACTGAAGCTGCTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACTGTGGTGTTAAGAGTTTCTATAGCATTACTGAAGCTGCTCAT  993

seq1  TGGTTGGAGAAAATTGGTTTAATTTTCTTAAGCACACATGTACTGACCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGAGAAAATTGGTTTAATTTTCTTAAGCACACATGTACTGACCTA  1043

seq1  GAAGTAAGGAATCTGTCACATGGCACTACACACTAAAAGTAAGGAGATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGGAATCTGTCACATGGCACTACACACTAAAAGTAAGGAGATGC  1093

seq1  CCACGACAAGCCTACTCTGGCCTAAGGATGCCACAAACACCATTACAAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGACAAGCCTACTCTGGCCTAAGGATGCCACAAACACCATTACAAAT  1143

seq1  TGCTAGCCATAGGACATGTGAATTC  1171
      |||||||||||||||||||||||||
seq2  TGCTAGCCATAGGACATGTGAATTC  1168

seq1: chr10_121854963_121855998
seq2: B6Ng01-162D13.g_67_1096

seq1  GAATTCCTGGCTCTCTCTGGTCCACACCCAGCTCTGGGTGCTCTCATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTCTCTCTGGTCCACACCCAGCTCTGGGTGCTCTCATCCC  50

seq1  ATCTGAGGACCAGAGCTTTGTGTGGAGTGTTTACGGCAACAGAACACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGACCAGAGCTTTGTGTGGAGTGTTTACGGCAACAGAACACTGG  100

seq1  AGTAGCATCTTAGTCAAGGAAATGAGTTGATTCTATGTTTTTATTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATCTTAGTCAAGGAAATGAGTTGATTCTATGTTTTTATTTTGTA  150

seq1  TTCCAGTCAAATGGCAGGATGGCTGTGCCTTTAACATTAGGATCAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCAAATGGCAGGATGGCTGTGCCTTTAACATTAGGATCAATTAC  200

seq1  GTTATAGGTTCTACCTCATCTTAGGTAGAAGCTCTATAGACCAGACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGGTTCTACCTCATCTTAGGTAGAAGCTCTATAGACCAGACATAA  250

seq1  ATGATGAGTATGGTGATTACCTTGTGAGAGTATGAACCTAGACTGCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTATGGTGATTACCTTGTGAGAGTATGAACCTAGACTGCTCTA  300

seq1  ATCAATGACCCATTCCCATGTAAATGTCTGGGAAATTAATAATTACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGACCCATTCCCATGTAAATGTCTGGGAAATTAATAATTACACTG  350

seq1  GGAAATTAATTCTTTCATATGATTTTGAGCTCAAGACCTTCATATTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAATTCTTTCATATGATTTTGAGCTCAAGACCTTCATATTTAGT  400

seq1  TCAGAGTTTCATACTATGTAACGTGATCTCTTTCAGAAAGAAATTACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTTCATACTATGTAACGTGATCTCTTTCAGAAAGAAATTACATC  450

seq1  ATAATTAAATCTCCCTTTTCATTACATTATTCCCACGGGATTCTGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAATCTCCCTTTTCATTACATTATTCCCACGGGATTCTGTTCTG  500

seq1  CCTGAGTCTTAGTTAGAAGGAAAGTTATTACAATATTACTTCTGAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTTAGTTAGAAGGAAAGTTATTACAATATTACTTCTGAACAAA  550

seq1  AAAATTATTTTTTCCCTTCTCTACATTTGCCTACTCACAGCTGAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTTTCCCTTCTCTACATTTGCCTACTCACAGCTGAAATTTT  600

seq1  TAATATAATGCCTCTTAGCCTGGTTTGGAGAAAACGTCACAGAGAGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATGCCTCTTAGCCTGGTTTGGAGAAAACGTCACAGAGAGGCAC  650

seq1  CATTTGTTGTGGTTTTACATGAAAATTTTCTGACCCTGAACCTGGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGTGGTTTTACATGAAAATTTTCTGACCCTGAACCTGGTTTGA  700

seq1  TGGAAATCATTTGCTGAGGTAATTATCTCAAATTAACTACCAAGCTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCATTTGCTGAGGTAATTATCTCAAATTAACTACCAAGCTGATG  750

seq1  AATCGCTTACTACTTAAAAGCTGTGATGGGGAGAGGAGTAATTGAGAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTTACTACTTAAAAGCTGTGATGGGGAGAGGAGTAATTGAGAGCG  800

seq1  GCCTTGTTGGGAGGGGATGTGGACATTTTTTTTTTCAGCAGCCAATCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGGAGGGGATGTGGACATTTTTTTTTTCAGCAGCCAATCAAC  850

seq1  TTAGAGGTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGTCTTGTTTTTTT  900
      |||||||||||||||||||||||||   |||||||||||||   ||||||
seq2  TTAGAGGTTTTTTTTTGTTTTGTTT--GTTTGTTTTTGTCT--GTTTTTT  896

seq1  TTCTGTGTAGAATCTGAATGTATTGTCACAAGGTGAACACCAGTCTTATA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTG-AGAATCTGAATGTATTGTCACAAGGTGAACACCAGTCTTATA  945

seq1  TAATACAGAAAATAAAGGGGGTAGGATGTCACGGGGCA-GGCATAGTACA  999
      ||||||||||||||||||| |||||||||||||||||| |||||||||| 
seq2  TAATACAGAAAATAAAGGGTGTAGGATGTCACGGGGCAGGGCATAGTACT  995

seq1  TGGAAGTTACCTGACACAAAACAAAGGAATGACTTCA  1036
       |||||||||||||||||| ||  | | |||||||||
seq2  GGGAAGTTACCTGACACAATAC--ATGGATGACTTCA  1030