BAC Information

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BAC

Clone NameB6Ng01-162J05
Chromosome10 (Build37)10 (Build37)
Map Location 105,855,379 - 105,855,781104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758, EG639162
Downstream genePpfia2, Olfr1556-ps1, 8430416H19Rik, Lin7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J05.bB6Ng01-162J05.g
ACCDH955382DH955383
length397464
definitionDH955382|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J05, 5' end.DH955383|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,855,379 - 105,855,781)(104,053,903 - 104,054,363)
sequence
tgtttttaataaataaaacaaaagaaaacaaccaaaatgaaacactgtgt
ggaatcacagagtagaaatgggtttgcattaatgaaataacataaatata
attaggacattgtcaatagaactcaatagaacacttgctcttgcaatgtg
gaacatctagacaggaattggtaaatagcagtcactgagtcataacaata
ttgtaaaaatgaaccttcttagacaaagggaagaaaaaaatgaacacaaa
caagcatgtaacatatcttggaaactttagtaacatctaggtttcctaac
tctatttcatcttatgtagttatttatatttgtatagccatcaggctact
tatgtgtgtgtgtgtccatgtggaggggaagagggatgtggggtggg
tcacctgaggaataccgaatgactgagaagcacctgaaaaagtgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccttgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcaaggatgtggagaaagaggaacatccctccattgctggtgggattg
caagcatgtacaaccactctggaaatcagtctggaggttcctcagaaaat
tggacatggtactactggaagatgcagcagtacctctcctgggcatatac
ccagaagaagttccaactggtaataagaacatatgctccactgtgttcat
agcagccttatttatgatagccagaagctggaaagaacccaaatgtccct
caaaagaagaatcgatacagaaaatgtgatacatttacacaatggagtat
actcagctattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_105855379_105855781
seq2: B6Ng01-162J05.b_46_448 (reverse)

seq1  CCCACCCCACATCCCTCTTCCCCTCCACATGGACACACACACACATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCACATCCCTCTTCCCCTCCACATGGACACACACACACATAAGT  50

seq1  AGCCTGATGGCTATACAAATATAAATAACTACATAAGATGAAATAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGGCTATACAAATATAAATAACTACATAAGATGAAATAGAGTT  100

seq1  AGGAAACCTAGATGTTACTAAAGTTTCCAAGATATGTTACATGCTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTAGATGTTACTAAAGTTTCCAAGATATGTTACATGCTTGTTT  150

seq1  GTGTTCATTTTTTTCTTCCCTTTGTCTAAGAAGGTTCATTTTTACAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTTTTTTCTTCCCTTTGTCTAAGAAGGTTCATTTTTACAATAT  200

seq1  TGTTATGACTCAGTGACTGCTATTTACCAATTCCTGTCTAGATGTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGACTCAGTGACTGCTATTTACCAATTCCTGTCTAGATGTTCCAC  250

seq1  ATTGCAAGAGCAAGTGTTCTATTGAGTTCTATTGACAATGTCCTAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGAGCAAGTGTTCTATTGAGTTCTATTGACAATGTCCTAATTAT  300

seq1  ATTTATGTTATTTCATTAATGCAAACCCATTTCTACTCTGTGATTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTATTTCATTAATGCAAACCCATTTCTACTCTGTGATTCCACA  350

seq1  CAGTGTTTCATTTTGGTTGTTTTCTTTTGTTTTATTTATTAAAAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCATTTTGGTTGTTTTCTTTTGTTTTATTTATTAAAAACAGAA  400

seq1  TTC  403
      |||
seq2  TTC  403

seq1: chr10_104053903_104054363
seq2: B6Ng01-162J05.g_68_537 (reverse)

seq1  TTTAATAG---------CTCCATTGTGTAAATGTACCACATTTTCTGTAT  41
      ||||||||         |||||||||||||||||| ||||||||||||||
seq2  TTTAATAGCTGAGTATACTCCATTGTGTAAATGTATCACATTTTCTGTAT  50

seq1  CTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTA  91
      | |||| ||| ||||||| ||| |||||||||||||||| |||||||| |
seq2  CGATTCTTCTTTTGAGGGACATTTGGGTTCTTTCCAGCTTCTGGCTATCA  100

seq1  TAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTT  141
      ||||||||||||||||||| | |||||||||| ||| ||| ||||| |||
seq2  TAAATAAGGCTGCTATGAACACAGTGGAGCATATGTTCTTATTACCAGTT  150

seq1  GGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGG  191
      ||  | |||||||| ||||||||||| ||||||| ||||| ||| ||| |
seq2  GGAACTTCTTCTGGGTATATGCCCAGGAGAGGTACTGCTGCATCTTCCAG  200

seq1  TAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTG  241
      |||||| |||||||||||||||| ||||| |||||| |||||||||||||
seq2  TAGTACCATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAGTG  250

seq1  GTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCT  291
      |||||||| || ||||||||||||| |||||||||  |||||||||||||
seq2  GTTGTACATGCTTGCAATCCCACCAGCAATGGAGGGATGTTCCTCTTTCT  300

seq1  CCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCAT  341
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCAT  350

seq1  TCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCC  391
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGACTGGTGTGAGGTGGAATCTCAAGGTTGTTTTGATTTGCATTTCCC  400

seq1  TGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGG  441
      |||||||||||||||||||||| ||||||||||||||||| | |||||||
seq2  TGATGATTAAGGATGTTGAACACTTTTTCAGGTGCTTCTCAGTCATTCGG  450

seq1  TATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||
seq2  TATTCCTCAGGTGAGAATTC  470