BAC Information

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BAC

Clone NameB6Ng01-162M05
Chromosome10 (Build37)
Map Location 56,313,027 - 56,519,140
singlet/doubletdoublet
Overlap geneLOC100042622, LOC668355
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M05.bB6Ng01-162M05.g
ACCDH955517DH955518
length1,121549
definitionDH955517|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M05, 5' end.DH955518|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,313,027 - 56,314,172)(56,518,586 - 56,519,140)
sequence
gaattctgtaactaacagttcatgagcttctggtgcaattcagcatctta
atttcaaataaggaagaggaacacaatgttgcacccatgacatggggttc
tccagctgggctgtagtgtagtggtggagagcttgcccagcatgtacact
gggtgagtggataagtaaccaaacccagttgcctatctcttagtttaatg
attagtaatttgcttccattcaagtccaactctacaatacagaaaaagtt
ctaggttatctgaatagtgtgcaaagaaatcaactaaggaaagaacccaa
aatttatagtgtattttaacttcagactagactttgcaatcctcctgaaa
gtatttggaaaatgtagccatgccttgtctgtgactatgctaattatgtc
tgcacctcatggtttggccttgagtagttatctttaacagtgaggacaga
aatcagtcttcttactactcgctctgtcttcagggtcttacatctctggg
ttaagatgcttaaggtcagaaaagatagctgcatctgtggaacaaacatt
tttctctgttccacacagagtgatattgtttcctttaagacatgggtcca
aacttcctgaacattagctttctttttttttttcctgtctgtattacttc
ctttcagattgtgccttggttatatgttatatcaacatttagaattataa
tatacattgtaattgatgtattgtaccctttctttcaatcaaattatata
tagcaacaaagtatctgcaacaggatgaaaaatctattaaatgatttagg
aaaaattcttccttagggtgcatagactgtggaagaaatatgaggaaaat
atcaaagtagcctttgtaaactacgtataaaccatgtgtggtgacacaaa
cctttaatcccagcacctaggagcagaagcagcccatctatcactatgat
tttgatgccaacttggtttacatagcaagttccagaatagccagagacac
atagagaactctgtctccagaacaacaccaacaaagtaccaacacttaaa
aaaaaacccctaaaggaaaaagactttggattctttgttttacccatatt
atcattatgtacacaaaatta
agttacccgtatttccaaagttctgctaagccttgattttattaattatt
agcaagttctaattcaattcagctttgtgcccatgtccataaatactgtg
gtttccaagaacactgtatgctctttattctcatatatcccacaggtgga
atttttaactgctcggattcagtttcagacaccaatgggaagttgattag
ctgtcacagatttacatggctgaggaccatgcctcagcttaaagaataat
atctaggtatactaagatgtgaggatgaaacatgaaggctgctttgtcag
gcctgacacttacttgcaatgtgcagaaggaactgccctttggctttgtg
tgtgggaaacgagctttacaaagcccaaaaaaacaaaagtaggaagaaag
aggcagctaaaatttaaaggacccttgtgactgataagaaatacagttag
gactggtgtctcaggtttgtaatcatagcattcaagaggttgatgcagga
ggttgtccacaaattgaaggtgtgtgtgtgtgtatatatactagataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56313027_56314172
seq2: B6Ng01-162M05.b_45_1165

seq1  GAATTCTGTAACTAACAGTTCATGAGCTTCTGGTGCAATTCAGCATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACTAACAGTTCATGAGCTTCTGGTGCAATTCAGCATCTTA  50

seq1  ATTTCAAATAAGGAAGAGGAACACAATGTTGCACCCATGACATGGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATAAGGAAGAGGAACACAATGTTGCACCCATGACATGGGGTTC  100

seq1  TCCAGCTGGGCTGTAGTGTAGTGGTGGAGAGCTTGCCCAGCATGTACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGGGCTGTAGTGTAGTGGTGGAGAGCTTGCCCAGCATGTACACT  150

seq1  GGGTGAGTGGATAAGTAACCAAACCCAGTTGCCTATCTCTTAGTTTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGTGGATAAGTAACCAAACCCAGTTGCCTATCTCTTAGTTTAATG  200

seq1  ATTAGTAATTTGCTTCCATTCAAGTCCAACTCTACAATACAGAAAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATTTGCTTCCATTCAAGTCCAACTCTACAATACAGAAAAAGTT  250

seq1  CTAGGTTATCTGAATAGTGTGCAAAGAAATCAACTAAGGAAAGAACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTATCTGAATAGTGTGCAAAGAAATCAACTAAGGAAAGAACCCAA  300

seq1  AATTTATAGTGTATTTTAACTTCAGACTAGACTTTGCAATCCTCCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGTGTATTTTAACTTCAGACTAGACTTTGCAATCCTCCTGAAA  350

seq1  GTATTTGGAAAATGTAGCCATGCCTTGTCTGTGACTATGCTAATTATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAAAATGTAGCCATGCCTTGTCTGTGACTATGCTAATTATGTC  400

seq1  TGCACCTCATGGTTTGGCCTTGAGTAGTTATCTTTAACAGTGAGGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCATGGTTTGGCCTTGAGTAGTTATCTTTAACAGTGAGGACAGA  450

seq1  AATCAGTCTTCTTACTACTCGCTCTGTCTTCAGGGTCTTACATCTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCTTCTTACTACTCGCTCTGTCTTCAGGGTCTTACATCTCTGGG  500

seq1  TTAAGATGCTTAAGGTCAGAAAAGATAGCTGCATCTGTGGAACAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGCTTAAGGTCAGAAAAGATAGCTGCATCTGTGGAACAAACATT  550

seq1  TTTCTCTGTTCCACACAGAGTGATATTGTTTCCTTTAAGACATGGGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTCCACACAGAGTGATATTGTTTCCTTTAAGACATGGGTCCA  600

seq1  AACTTCCTGAACATTAGCTTTCTTTTTTTTTTTCCTGTCTGTATTACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGAACATTAGCTTTCTTTTTTTTTTTCCTGTCTGTATTACTTC  650

seq1  CTTTCAGATTGTGCCTTGGTTATATGTTATATCAACATTTAGAATTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATTGTGCCTTGGTTATATGTTATATCAACATTTAGAATTATAA  700

seq1  TATACATTGTAATTGATGTATTGTACCCTTTCTTTCAATCAAATTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTGTAATTGATGTATTGTACCCTTTCTTTCAATCAAATTATATA  750

seq1  TAGCAACAAAGTATCTGCAACAGGATGAAAAATCTATTAAATGATTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAAAGTATCTGCAACAGGATGAAAAATCTATTAAATGATTTAGG  800

seq1  AAAAATTCTTCCTTAGGGTGCATAGACTGTGGAAGAAATATGAGGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTTCCTTAGGGTGCATAGACTGTGGAAGAAATATGAGGAAAAT  850

seq1  ATCAAAGTAGCCTTTGTAAACTACGTATAAAACCATGTGTGGTGACACAA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCAAAGTAGCCTTTGTAAACTACGTAT-AAACCATGTGTGGTGACACAA  899

seq1  ACCTTTAATCCCAGCACCTAGGAGGCAGAAGCAGGCCCATCTATCACTAT  950
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ACCTTTAATCCCAGCACCTAGGA-GCAGAAGCA-GCCCATCTATCACTAT  947

seq1  GATTTTGATGCCAACTTGGTTTACATAGCAAGTTCCAGAATAGCCAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGATGCCAACTTGGTTTACATAGCAAGTTCCAGAATAGCCAGAGA  997

seq1  CACATAGAGAAACTCTGTCTCAGAAACAAACAACAAACAAAAGTACCCAA  1050
      ||||||||| |||||||||||   ||| |||| |||   |||||| ||||
seq2  CACATAGAG-AACTCTGTCTCCAGAAC-AACACCAA--CAAAGTA-CCAA  1042

seq1  CAACATAAAAAAAAAACCCACTAAAAGGAAAAAAGAACATTTATGGATTC  1100
      | || ||||||||||  || |||||  | |||||||     | |||||||
seq2  C-ACTTAAAAAAAAA--CCCCTAAA--GGAAAAAGA----CTTTGGATTC  1083

seq1  TTGTTTTTAACCACATATTATATCCATTATGTAACACACAAAATTA  1146
      ||  |||||  | ||||||||   ||||||||   |||||||||||
seq2  TTTGTTTTA--CCCATATTAT---CATTATGT---ACACAAAATTA  1121

seq1: chr10_56518586_56519140
seq2: B6Ng01-162M05.g_70_624 (reverse)

seq1  CTTATCTAGTATATATACACACACACACACCTTCAATTTGTGGACAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAGTATATATACACACACACACACCTTCAATTTGTGGACAACCT  50

seq1  CCTGCATCAACCTCTTGAATGCTATGATTACAAACCTGAGACACCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCAACCTCTTGAATGCTATGATTACAAACCTGAGACACCAGTCC  100

seq1  TAACTGTATTTCTTATCAGTCACAAGGGTCCTTTAAATTTTAGCTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTATTTCTTATCAGTCACAAGGGTCCTTTAAATTTTAGCTGCCTC  150

seq1  TTTCTTCCTACTTTTGTTTTTTTGGGCTTTGTAAAGCTCGTTTCCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTACTTTTGTTTTTTTGGGCTTTGTAAAGCTCGTTTCCCACAC  200

seq1  ACAAAGCCAAAGGGCAGTTCCTTCTGCACATTGCAAGTAAGTGTCAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCAAAGGGCAGTTCCTTCTGCACATTGCAAGTAAGTGTCAGGCC  250

seq1  TGACAAAGCAGCCTTCATGTTTCATCCTCACATCTTAGTATACCTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGCAGCCTTCATGTTTCATCCTCACATCTTAGTATACCTAGATA  300

seq1  TTATTCTTTAAGCTGAGGCATGGTCCTCAGCCATGTAAATCTGTGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTAAGCTGAGGCATGGTCCTCAGCCATGTAAATCTGTGACAGC  350

seq1  TAATCAACTTCCCATTGGTGTCTGAAACTGAATCCGAGCAGTTAAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACTTCCCATTGGTGTCTGAAACTGAATCCGAGCAGTTAAAAATT  400

seq1  CCACCTGTGGGATATATGAGAATAAAGAGCATACAGTGTTCTTGGAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGGGATATATGAGAATAAAGAGCATACAGTGTTCTTGGAAACC  450

seq1  ACAGTATTTATGGACATGGGCACAAAGCTGAATTGAATTAGAACTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTATGGACATGGGCACAAAGCTGAATTGAATTAGAACTTGCTA  500

seq1  ATAATTAATAAAATCAAGGCTTAGCAGAACTTTGGAAATACGGGTAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATAAAATCAAGGCTTAGCAGAACTTTGGAAATACGGGTAACTG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555