BAC Information

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BAC

Clone NameB6Ng01-162N03
Chromosome10 (Build37)
Map Location 34,266,999 - 34,442,662
singlet/doubletdoublet
Overlap geneFrk
Upstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N03.bB6Ng01-162N03.g
ACCDH955561DH955562
length1,207855
definitionDH955561|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N03, 5' end.DH955562|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,266,999 - 34,268,236)(34,441,810 - 34,442,662)
sequence
gaattcactgaagaatatcaaatgtttctgatgttggaatgttcttttta
aaatgaactctgattggctaattgaggtttatgtctctcttgctttttag
gtggttttttggagcaatcaaaagagcagatgcagaaaaacaacttctgt
attcagaaaaccagacgggcgcctttctaatcagagagagtgagagccag
aagggtgacttttccctctcaggtgtgggcattgtcctgtgtgattggca
tatgaatttgagagcttgcagtcaagcacttgctatgtatacctgagtat
gttattgtcaaattttcctgttttcttttagtcacaatttcaccaaaatt
aaaacatactgaactactcaggaataacatcaatattagacaatctctcc
caccctcatggtgagatgcttctagaaacagttctcaatatatgaactat
agatatgaaatgacaagcccagggatcatgggatttggcttcacattaat
taagtatccttttggagaaatgattacaaagaagtaaaatctattctatt
ataaaaactgatttgcaaaaatgctatgctctttttcattcctctttccc
ctctttctccttctgtgtcttcacttgtctatcttataactaaaaaaaat
agaaatgttgagaaaaaatatatttatttaacctactggatgcattatgc
tgttgaatactgtttaagataaaatgtgtaactgtactgccctaagaaaa
cagtgtaggggcttgagaaacaccttcagagctttagacattgtgcctgc
tttcacaaatctgcattccaattcagttgcaacaaggcagaatatccttg
tttagagttgccacaccaacctacctctaagtgggacttcttgctctttc
ctagtttagatctctatacatctagtacatgttctttttccccattatca
tcctttaaagcatgtattatatttttttttttctgagtagattaaacttt
tttggagtgggagcaaattccatcaatttctgttgctaattttatgtagt
catgatcttgtgtaactcatgatgtcccatgctcactagggtgtgattcc
ttcaaagcacactggagtcaatctttaagaaattggacagatcctgcaag
gctggctatgacgttatctcaaactgggtgcaagaggtgagatatcaagg
ttagtga
gaattctaaacccttgatcttggtcaaggacgcccttggactgttggaac
actggtggaaggctttagacatgtcagaattcaattttaaaaagcactta
taatacgaaaatactgaaagagagcacgtggatccatacactagactaac
gcgggaatggaacgcgggagtgaaaaattactgtatgggtagggaacgct
agactccaggaggagagcttccttgaaactcttttgcctcatgactgact
tttaagcctctcagcttgtccagttgactcgactggagagcgtagcaact
ttgctatgatttaactcatataatgataaagtttatggaagatcttgaga
ccaagcacagcattgcttgacattttagggaagtgattccatgcctgacc
acaaacactgggcagtgtccctcatttgtactaaatacccactggtagta
tcaccaacccaactgtggcaaatgaaactatctctagaaactttcaaatt
atctttaaatggagaacagtcaacatcagatgagtagttgcctaattccc
tcactttcaatatccattgtatctaaactctttcaccaagaactatgcag
cacataaaagaagattcagctatctttttaaagttatctcatctattgtt
gatttgatgcaacaatatgtgtattgcacaccaagtgggtgaaagacatg
ttattctatcagaatatattctagaaaaataggtaggtagatagatagat
agatagatagatagatagatagatagatagatagataaatagattgtaca
cgtgtgtctctctccctctctctggtgaatgtgtgtgtgtgggggtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34266999_34268236
seq2: B6Ng01-162N03.b_48_1254

seq1  GAATTCACTGAAGAATATCAAATGTTTCTGATGTTGGAATGTTCTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGAATATCAAATGTTTCTGATGTTGGAATGTTCTTTTTA  50

seq1  AAATGAACTCTGATTGGCTAATTGAGGTTTATGTCTCTCTTGCTTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACTCTGATTGGCTAATTGAGGTTTATGTCTCTCTTGCTTTTTAG  100

seq1  GTGGTTTTTTGGAGCAATCAAAAGAGCAGATGCAGAAAAACAACTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTTTGGAGCAATCAAAAGAGCAGATGCAGAAAAACAACTTCTGT  150

seq1  ATTCAGAAAACCAGACGGGCGCCTTTCTAATCAGAGAGAGTGAGAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAACCAGACGGGCGCCTTTCTAATCAGAGAGAGTGAGAGCCAG  200

seq1  AAGGGTGACTTTTCCCTCTCAGGTGTGGGCATTGTCCTGTGTGATTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGACTTTTCCCTCTCAGGTGTGGGCATTGTCCTGTGTGATTGGCA  250

seq1  TATGAATTTGAGAGCTTGCAGTCAAGCACTTGCTATGTATACCTGAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTGAGAGCTTGCAGTCAAGCACTTGCTATGTATACCTGAGTAT  300

seq1  GTTATTGTCAAATTTTCCTGTTTTCTTTTAGTCACAATTTCACCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTCAAATTTTCCTGTTTTCTTTTAGTCACAATTTCACCAAAATT  350

seq1  AAAACATACTGAACTACTCAGGAATAACATCAATATTAGACAATCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACTGAACTACTCAGGAATAACATCAATATTAGACAATCTCTCC  400

seq1  CACCCTCATGGTGAGATGCTTCTAGAAACAGTTCTCAATATATGAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCATGGTGAGATGCTTCTAGAAACAGTTCTCAATATATGAACTAT  450

seq1  AGATATGAAATGACAAGCCCAGGGATCATGGGATTTGGCTTCACATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGAAATGACAAGCCCAGGGATCATGGGATTTGGCTTCACATTAAT  500

seq1  TAAGTATCCTTTTGGAGAAATGATTACAAAGAAGTAAAATCTATTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCCTTTTGGAGAAATGATTACAAAGAAGTAAAATCTATTCTATT  550

seq1  ATAAAAACTGATTTGCAAAAATGCTATGCTCTTTTTCATTCCTCTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTGATTTGCAAAAATGCTATGCTCTTTTTCATTCCTCTTTCCC  600

seq1  CTCTTTCTCCTTCTGTGTCTTCACTTGTCTATCTTATAACTAAAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCTTCTGTGTCTTCACTTGTCTATCTTATAACTAAAAAAAAT  650

seq1  AGAAATGTTGAGAAAAAATATATTTATTTAACCTACTGGATGCATTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTGAGAAAAAATATATTTATTTAACCTACTGGATGCATTATGC  700

seq1  TGTTGAATACTGTTTAAGATAAAATGTGTAACTGTACTGCCCTAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATACTGTTTAAGATAAAATGTGTAACTGTACTGCCCTAAGAAAA  750

seq1  CAGTGTAGGGGCTTGAGAAACACCTTCAGAGCTTTAGACATTGTGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGGGGCTTGAGAAACACCTTCAGAGCTTTAGACATTGTGCCTGC  800

seq1  TTTCACAAATCTGCATTCCAATTCAGTTGCAACAAGGCAGAATATCCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAATCTGCATTCCAATTCAGTTGCAACAAGGCAGAATATCCTTG  850

seq1  TTTAGAGTTGCCACACCAACCTACCTCTAAGTGGGACTTTCTTGCTCTTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTAGAGTTGCCACACCAACCTACCTCTAAGTGGGAC-TTCTTGCTCTTT  899

seq1  CCTAGTTTAGATCTCTATACATCTAGTACATGTTCTTTTTCCCCATTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTAGATCTCTATACATCTAGTACATGTTCTTTTTCCCCATTATC  949

seq1  ATCCTTTAAAGCATGTATTATA-TTTTTTTTTTCTGAGTAGATTAAACTT  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCCTTTAAAGCATGTATTATATTTTTTTTTTTCTGAGTAGATTAAACTT  999

seq1  TTTTGGAGTGGGAAGCAAATTCCATC-ATTTCTGTTTGCCTATTTTTATG  1048
      |||||||||||| ||||||||||||| |||||||||   ||| |||||||
seq2  TTTTGGAGTGGG-AGCAAATTCCATCAATTTCTGTT--GCTAATTTTATG  1046

seq1  TTAGTCATGATCTTGTGTAACTCATGATGTCCCATTGGCTCACTAGAAGT  1098
       ||||||||||||||||||||||||||||||||||  |||||||||  | 
seq2  -TAGTCATGATCTTGTGTAACTCATGATGTCCCAT--GCTCACTAG--GG  1091

seq1  TGTGATTTCCTTCAAAAGGCCACACT-GAGTCCATCTTTTAGGAATTTGG  1147
      ||||| ||||||||||    |||||| ||||| ||| |||| ||| ||||
seq2  TGTGA-TTCCTTCAAA---GCACACTGGAGTCAATC-TTTAAGAAATTGG  1136

seq1  ACAAGAACCCTGCATAGGCTGTGCATAATTGACACCCTTTATCCTTCCAC  1197
      |||   | |||||| |||||| || ||  |||    | |||||  ||   
seq2  ACA--GATCCTGCA-AGGCTG-GC-TA--TGA----CGTTATC--TC---  1170

seq1  AAACCTGTGGTGCCAAAGATGGGAGGATTCAAGGTTAGTGA  1238
       || ||| |||||  |||| | |||   |||||||||||||
seq2  -AAACTG-GGTGC--AAGAGGTGAGATATCAAGGTTAGTGA  1207

seq1: chr10_34441810_34442662
seq2: B6Ng01-162N03.g_67_921 (reverse)

seq1  --CACACACACACACACACACACACATACACCAGAGAGAGGGAGAGAGAC  48
        ||||||||| | ||||||||||||| ||||||||||||||||||||||
seq2  CACACACACACCCCCACACACACACATTCACCAGAGAGAGGGAGAGAGAC  50

seq1  ACACGTGTACAATCTATTTATCTATCTATCTATCTATCTATCTATCTATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTACAATCTATTTATCTATCTATCTATCTATCTATCTATCTATC  100

seq1  TATCTATCTATCTATCTACCTACCTATTTTTCTAGAATATATTCTGATAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTACCTACCTATTTTTCTAGAATATATTCTGATAG  150

seq1  AATAACATGTCTTTCACCCACTTGGTGTGCAATACACATATTGTTGCATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGTCTTTCACCCACTTGGTGTGCAATACACATATTGTTGCATC  200

seq1  AAATCAACAATAGATGAGATAACTTTAAAAAGATAGCTGAATCTTCTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACAATAGATGAGATAACTTTAAAAAGATAGCTGAATCTTCTTTT  250

seq1  ATGTGCTGCATAGTTCTTGGTGAAAGAGTTTAGATACAATGGATATTGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGCATAGTTCTTGGTGAAAGAGTTTAGATACAATGGATATTGAA  300

seq1  AGTGAGGGAATTAGGCAACTACTCATCTGATGTTGACTGTTCTCCATTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGAATTAGGCAACTACTCATCTGATGTTGACTGTTCTCCATTTA  350

seq1  AAGATAATTTGAAAGTTTCTAGAGATAGTTTCATTTGCCACAGTTGGGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATTTGAAAGTTTCTAGAGATAGTTTCATTTGCCACAGTTGGGTT  400

seq1  GGTGATACTACCAGTGGGTATTTAGTACAAATGAGGGACACTGCCCAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATACTACCAGTGGGTATTTAGTACAAATGAGGGACACTGCCCAGTG  450

seq1  TTTGTGGTCAGGCATGGAATCACTTCCCTAAAATGTCAAGCAATGCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTCAGGCATGGAATCACTTCCCTAAAATGTCAAGCAATGCTGTG  500

seq1  CTTGGTCTCAAGATCTTCCATAAACTTTATCATTATATGAGTTAAATCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTCAAGATCTTCCATAAACTTTATCATTATATGAGTTAAATCAT  550

seq1  AGCAAAGTTGCTACGCTCTCCAGTCGAGTCAACTGGACAAGCTGAGAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTGCTACGCTCTCCAGTCGAGTCAACTGGACAAGCTGAGAGGC  600

seq1  TTAAAAGTCAGTCATGAGGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCAGTCATGAGGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGG  650

seq1  AGTCTAGCGTTCCCTACCCATACAGTAATTTTTCACTCCCGCGTTCCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCGTTCCCTACCCATACAGTAATTTTTCACTCCCGCGTTCCATT  700

seq1  CCCGCGTTAGTCTAGTGTATGGATCCACGTGCTCTCTTTCAGTATTTTCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGTTAGTCTAGTGTATGGATCCACGTGCTCTCTTTCAGTATTTTCG  750

seq1  TATTATAAGTGCTTTTTAAAATTGAATTCTGACATGTCTAAAGCCTTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAGTGCTTTTTAAAATTGAATTCTGACATGTCTAAAGCCTTCCA  800

seq1  CCAGTGTTCCAACAGTCCAAGGGCGTCCTTGACCAAGATCAAGGGTTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTCCAACAGTCCAAGGGCGTCCTTGACCAAGATCAAGGGTTTAG  850

seq1  AATTC  853
      |||||
seq2  AATTC  855