BAC Information

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BAC

Clone NameB6Ng01-162O05
Chromosome10 (Build37)
Map Location 90,541,275 - 90,541,747
singlet/doubletsinglet
Overlap geneApaf1
Upstream geneAnks1b, LOC544719
Downstream gene1200009F10Rik, Slc25a3, Tmpo, LOC100041769, LOC100041799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O05.bB6Ng01-162O05.g
ACCDH955612DH955613
length5031,227
definitionDH955612|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O05, 5' end.DH955613|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ctacaacttggcaacaacaaggaaaccccaacattattttaaaatgggtg
aatagcttgaacagatagttctccagtaaagaaataaaaattgcatacgt
tgtcaatgagcacatggtaaaatgtttcacactgtaatcattaggggact
gccactcaaaacaatcagctgtcaccacttgcatccatcaggacactata
aaaaacacaaatagcaggggctagagagatgcctcagtggttaagagcac
tagctgctcttccaaaggacctgggttcaaatcccagcacccacatggga
gctcacacctgtctgtagctccagtgccaggggatctgacaccttcacac
agacaaaacacaaataaaaatgaattaaaaaaaaaatacaaatactgagc
aagacacaatggcctgtgcatttaatcctagtatgcaatcccagcatgca
ggagacaaaggcaggcagatcactgcaagtttttttttttaaagatttat
tta
gaattctctgtttagatctgcaccccatttttaattgggctatttgtttt
ctttgaaatctgtttttttgaaatctgtattttggatattagtcctctat
tgagtgtgtagttggtaaaaaacaacaaacaaacaaacaaacaaacaaac
aaaaaaaccttttcccattctgtaggctgccacattgcctgaattataat
gtcttttgccatgtagaaacttctgtttcatgaggtcccgcttattaatt
gttgatcttagtgcctgtgcacctaacaagatgaacacggaatttttgtc
tttcagtttgttgatatggtggactacatttatcaatttatgtatgttga
atcattcctgcatctctgggatgaagcctactaaatcatgatggatgatc
tttgtgtagtgttcttgaatttggtttacaagtattttattgagaatttt
tgcatctatgtttgaaagggaaattgatctataattatctttctttttgg
gtctttaagtggtttgggttagggtgactgtgttctcataaataaattga
gcaatgttccttctgttcctattttgtggaataatttgagaagtattggc
attaactcttatttgagtgtctagtacaattgtgctaaaaccacatggcc
ttgggctgtttttttggtcaggagattttaatcacgacttctctttcact
agcagtcataggtctacttaaattgctttcccaatcttgattttaacttt
ggtaattttaactttagtaagtggtacttatcaagagaaacattcatttc
ttttagattttccaatttggtagattataggtttttaatgtatgtcctta
taattctttggatttcctcagtgtctgttttatacctccatttcatctct
aattttcttatttggattgccttcctctatcttttagttaatttggctaa
gagtgagtcaactttactagtattctcaaagaaccaactacttggttagt
ctcaatgaaaccctttgtttcattgactcactgatattttttttatttgt
gatttcagccccaggttgattattctgcagtctactccttttgttgttga
tttaattttgttctagaggctctcaaggtatatgttaagtacatatgaga
atctccactttaaatagaacctaaggactggcccttaattgctcatggtc
gaaaagaaatgtggggtttaattctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_90541275_90541747
seq2: B6Ng01-162O05.b_274_428

seq1  GAGAGATGGCTCAGTGGTTAAGAGCACTAACTGCTCTTCTAGAGGTCCTG  50
      |||||||| |||||||||||||||||||| ||||||||| | ||| ||||
seq2  GAGAGATGCCTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAAAGGACCTG  50

seq1  AGTTCCATTTCCACCACCCACATGGTCGCTCACAACCATCGATAAGAAGA  100
       |||| | | ||| |||||||||||  ||||||| |  ||  ||      
seq2  GGTTCAAATCCCAGCACCCACATGGGAGCTCACACCTGTCTGTA------  94

seq1  TCTGATCCCTTTTGCTGTACTGTGGATGT-ATA---TGAAGCAGAGTACT  146
         | |||    |||    | | |||| | | |   | |  ||||     
seq2  ---GCTCC--AGTGC----CAGGGGATCTGACACCTTCACACAGA-----  130

seq1  CATACATTAAATAAAAACATTTTTACGGCGGGGGGGAGGGGAGGGGGTAT  196
      || |    |||||||||    || |                         
seq2  CAAAACACAAATAAAAATGAATTAA-------------------------  155

seq1  AGGGGACTTTCGGGATAGCATTTGAAATGTAAATAAAGAAAATGTCTAAT  246
                                                        
seq2  --------------------------------------------------  155

seq1  AAAAAATTGAAAAAAAAAAGAATATTTAAAAAAATTTTTTTACAAAAAAG  296
                                                        
seq2  --------------------------------------------------  155

seq1  ATCCAATGCCCTCTTCTGGCCTCTGAGGACACTATGCATATATATGTGCA  346
                                                        
seq2  --------------------------------------------------  155

seq1  CAGGCATACATGCAGGTAAAACGTGCAGACACATAAAATGAAAGTTTTCT  396
                                                        
seq2  --------------------------------------------------  155

seq1  TTTTTAAAGAATACAAATTTCTAAAAATTATTTACCTGTTCTATAAATGC  446
                                                        
seq2  --------------------------------------------------  155

seq1  TATATAAACACAAATAAAAATAATTAA  473
                                 
seq2  ---------------------------  155