BAC Information

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BAC

Clone NameB6Ng01-163B23
Chromosome10 (Build37)
Map Location 18,852,090 - 18,853,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
Downstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163B23.bB6Ng01-163B23.g
ACCDH955789DH955790
length1,1901,189
definitionDH955789|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B23, 5' end.DH955790|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccccaaatgctttccctaacaaaacagaccaccacgtgcatgc
cttccattgtctctttggagcataatatgttgttagcacttggctttgag
gaacactatctgaggtgtccagagtttctcatctctgctcatcatcaagt
gatgttggcaagggagagttggaaagggtagctgagtagctggttgtcac
acttttgtgtgtctgctctatgcttcttcatctaggcctcttgcttaact
gtttatacgacaaatagtgtccagctgaattcaagaaaactcccagtcca
caggcctatcttaaaaattatgttcatggtctggtttaaaatagttaaaa
tgtagatgcctaagcaacaacctgctaaaccagatatagatccaatagct
tcagtactgaagatacagtgatgtagcatggaaattgcacatgaagctta
tgttgtcagcttaacagaatacaggatcactcaagagatggacctactct
aattcttgctaatagaattgtgcctggacaattacaaatgctgagtgatt
aatgatcatttattgaatgctttctgagtattgggcatttcccaacaatg
catccaatacccataactattactcatagcaaactttgagagatttaagt
ataaaaatcttgaagcataggaagactatttgacacagatgactactgga
aaactaagcagagtccaggatacctgatttcaaaattcatacttgtttgt
tttgtttttctattcaacactactttgcttttcttgattttcaggctcca
catttctgaccaaacatccaaatgtttacctcccatacttagtttctgat
aaatgattaaatttacacagatattcatatctagtatttttattgttgaa
gttgatattaacacacaataatcttcaaatttttcataggttcaaggtgc
cagttaatattgatggtgatatacagaagacactgacaaagttgaacttt
cttcatcaatttctttgtggcccactgtgtatgctctctacaaagttttt
cttttttcgttttagtttacaatcgcaatccgtttaaacttctgaaatct
cttaaatgtttggtgctagggaggcctgagttacagcagtaatggaataa
ctgatttggaatgtttcagctattgtgctatcaatccgaa
gaattcttaataaaaagaaaatgaaagaaataaaatgggatacaagcagg
aaaggaagtgaaagtgtccgttcttgcagaagaaataactgtatatttta
aatatactaaagattccactagaaaattcttttttgggggtctaacactt
aatcattgattatctccttttttcttttttctttttctttttattggata
ttttctttatttacatttgaaatgttatcccctttcccagtttccttcct
tccaggaaacaacctatcacatcctccctccccttgcttctatgagggtg
ctcctccacccacccacccactcccaccaccctgccctcaattcctctat
actggggcatcaatcaagccttcataggaccaaggacctctcctcccatt
gatgcatgacaaggctgtcctctgctacacatgcagctggagccatgtgt
gctcctttgttgatggcttagtccctgggagctctggggggtctgggtga
ttgatattattgttcttcctatggggttgcaaaccccttcaactccttca
gtcccttctctaactcctctattagggaccctgtgctcagtccaatggtt
tgctgctaacatctgcctctgtatttgtcaggctctagcagggcctctaa
ggagacagccatatcaggctcctgtcagcaagcacttctttggcatccac
aatagtgtcagggtttagtgactgtatatgggatgaatccccgggtggcc
tttcctttagtctctgctctacactttatctccatatttgcttctgtgag
tattttgttctccttctaagaaggaccaaagtatccacactttggtcttc
cttcttcttgagcttcatgtggtctgtggattgtatcctggttatttggg
agcttttgcgattgggttacatcacttaagatgattatttttagttccat
ccatttgcctaagacttcatgaatcattgttttaatagtgagtaaatatt
ccattgtgtaatgtaccacattttctgtaatccattcctctccctagaaa
attcttaaactggataaaatacctttcagtaaagtagccaggaacataaa
atggcaattaaactcacgctcggttccataatctatatgtagcatctttg
atgaaagcgcggtaaaaagagtcatttctcagaagtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18852090_18853290
seq2: B6Ng01-163B23.b_45_1234

seq1  GAATTCTCCCCAAATGCTTTCCCTAACAAAACAGACCACCACGTGCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCAAATGCTTTCCCTAACAAAACAGACCACCACGTGCATGC  50

seq1  CTTCCATTGTCTCTTTGGAGCATAATATGTTGTTAGCACTTGGCTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGTCTCTTTGGAGCATAATATGTTGTTAGCACTTGGCTTTGAG  100

seq1  GAACACTATCTGAGGTGTCCAGAGTTTCTCATCTCTGCTCATCATCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTATCTGAGGTGTCCAGAGTTTCTCATCTCTGCTCATCATCAAGT  150

seq1  GATGTTGGCAAGGGAGAGTTGGAAAGGGTAGCTGAGTAGCTGGTTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGCAAGGGAGAGTTGGAAAGGGTAGCTGAGTAGCTGGTTGTCAC  200

seq1  ACTTTTGTGTGTCTGCTCTATGCTTCTTCATCTAGGCCTCTTGCTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTGTCTGCTCTATGCTTCTTCATCTAGGCCTCTTGCTTAACT  250

seq1  GTTTATACGACAAATAGTGTCCAGCTGAATTCAAGAAAACTCCCAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACGACAAATAGTGTCCAGCTGAATTCAAGAAAACTCCCAGTCCA  300

seq1  CAGGCCTATCTTAAAAATTATGTTCATGGTCTGGTTTAAAATAGTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTATCTTAAAAATTATGTTCATGGTCTGGTTTAAAATAGTTAAAA  350

seq1  TGTAGATGCCTAAGCAACAACCTGCTAAACCAGATATAGATCCAATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCCTAAGCAACAACCTGCTAAACCAGATATAGATCCAATAGCT  400

seq1  TCAGTACTGAAGATACAGTGATGTAGCATGGAAATTGCACATGAAGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGAAGATACAGTGATGTAGCATGGAAATTGCACATGAAGCTTA  450

seq1  TGTTGTCAGCTTAACAGAATACAGGATCACTCAAGAGATGGACCTACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGCTTAACAGAATACAGGATCACTCAAGAGATGGACCTACTCT  500

seq1  AATTCTTGCTAATAGAATTGTGCCTGGACAATTACAAATGCTGAGTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCTAATAGAATTGTGCCTGGACAATTACAAATGCTGAGTGATT  550

seq1  AATGATCATTTATTGAATGCTTTCTGAGTATTGGGCATTTCCCAACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCATTTATTGAATGCTTTCTGAGTATTGGGCATTTCCCAACAATG  600

seq1  CATCCAATACCCATAACTATTACTCATAGCAAACTTTGAGAGATTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATACCCATAACTATTACTCATAGCAAACTTTGAGAGATTTAAGT  650

seq1  ATAAAAATCTTGAAGCATAGGAAGACTATTTGACACAGATGACTACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATCTTGAAGCATAGGAAGACTATTTGACACAGATGACTACTGGA  700

seq1  AAACTAAGCAGAGTCCAGGATACCTGATTTCAAAATTCATACTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGCAGAGTCCAGGATACCTGATTTCAAAATTCATACTTGTTTGT  750

seq1  TTTGTTTTTCTATTCAACACTACTTTGCTTTTCTTGATTTTCAGGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTATTCAACACTACTTTGCTTTTCTTGATTTTCAGGCTCCA  800

seq1  CATTTCTGACCAAACATCCAAATGTTTACCTCCCATACTTAGTTTCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGACCAAACATCCAAATGTTTACCTCCCATACTTAGTTTCTGAT  850

seq1  AAATGATTAAATTTACACAGATATTCATATCTAGTATTTTTATTGTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTAAATTTACACAGATATTCATATCTAGTATTTTTATTGTTGAA  900

seq1  GTTGATATTAACACACAATAATCTTCAAATTTTTCATAGGTTCAAGGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTAACACACAATAATCTTCAAATTTTTCATAGGTTCAAGGTGC  950

seq1  CAGTTAATATTGATGGTGATAATACAGAAGACACTGACAAAAGTTTGAAC  1000
      |||||||||||||||||||| ||||||||||||||||||||   ||||||
seq2  CAGTTAATATTGATGGTGAT-ATACAGAAGACACTGACAAA--GTTGAAC  997

seq1  TTTCTCCATCAATTTCTTTGTGGCCCACTGTGTTATGCTCTCTACAAAGT  1050
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCTTCATCAATTTCTTTGTGGCCCACTGTG-TATGCTCTCTACAAAGT  1046

seq1  TTTTC-TTTTTCGTTTTAGTTTTACATCGC-ATCCGTTTAAAACTCTGAG  1098
      ||||| ||||||||||||||||   ||||| |||||||||||  ||||| 
seq2  TTTTCTTTTTTCGTTTTAGTTTACAATCGCAATCCGTTTAAACTTCTGAA  1096

seq1  ATCCTTCTTAAAAATGGTTTTGTGCTATGGGAGAGCTGGAAGTACAGCAG  1148
      |||  |||||||    |||| |||||| ||||| ||  ||  ||||||||
seq2  ATC--TCTTAAA---TGTTTGGTGCTA-GGGAG-GCCTGAGTTACAGCAG  1139

seq1  TAAATGAATAAATGAATTTAGAATGGTTCCAGCTATTGTGCTATCATTCC  1198
      |||  |||||| || |||| |||| ||| ||||||||||||||||| |||
seq2  TAATGGAATAACTG-ATTTGGAAT-GTTTCAGCTATTGTGCTATCAATCC  1187

seq1  GAA  1201
      |||
seq2  GAA  1190