BAC Information

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BAC

Clone NameB6Ng01-163C16
Chromosome10 (Build37)
Map Location 50,179,810 - 50,321,143
singlet/doubletdoublet
Overlap geneLOC629652, Ascc3
Upstream geneGrik2
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C16.bB6Ng01-163C16.g
ACCDH955821DH955822
length9781,138
definitionDH955821|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C16, 5' end.DH955822|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,179,810 - 50,180,661)(50,320,010 - 50,321,143)
sequence
gaattcagtttgacttatcttgcaaaagtcttgagcatgctgtcttaact
gctctgaatgtatatgtggagctgccctgctgtgtctggaaaacatagtt
tccttatcatcatgcattgccttagactcttacactccttctgccctctc
ttgtcagtgctgatcaccatctaaattaaaaagaagattctctgataagg
gctgagagatgatctatggatataataataagttatttaatatattgtca
atttagcagaataataccagtaagttctctcccagagtccatatctgtct
agccacagattccttgtcctattaatggaaggttaattaatggtggttag
aacgcccctgtcatcggtcctctgagccagcggcgacgcgaactacacag
acaccaaggcgggttcacgcatcaacgtctttacttgtggctttttcttt
tacagctcttttctccggcagcctcttctccctccatccttctctcagca
agagctaaactctttctacttagggcaaggctatattcctaactcccaga
aacaacagcttctcttagtactacttctactcacggcaagggctaaaact
cctcactactctacttctggcttctacttagggcaagggctaaacaacaa
ctccttatttatttatttatttatttatttatttatttatttatttatta
catattttcctcaattacatttccaatgctaccccaaaagtcccccatac
cctccccccccccacttctctacccacccattcccattttttttggccct
ggcattcccctgtactggggcatataaagtttgtgtgtccaatgggcctc
tctttccagtgatggccgactaggccatctttttgatacatatgcagcta
gagtcaagagctccggggtactggttagttcattttgttgtccattctat
agggttgcaaattcctttagctccttgg
gaattcagaaaacacaggaacagatcattaactacctgcacacatctcac
acaatacaaaatgtatgcttatgtattttacaaacataaaaatagagatt
gtgttatttactgagaaaccttgtttctagttgtggtgtggctcagcctt
tagcatacataacaccttcaatcactgtggctggaatatagactgcagag
gagtttgagccagaacagctgagttgaaccagccagccagtgttcagaaa
gaactaaaaagagtgagcttatgcagcagtaagtctcaggggctgagaac
attctaagcttagatcagattgtacagaggcgagaagcttccaagactag
gcctaggttagcagactcaagccagggagacaattacatcaagtgaacta
aagatatcttcacatgtttataaactgaatctctagggatgttctaggaa
caggtttagatgcttggaattaaaggaagtttgaaacatctctccattcc
tagtaggagctttacaattagaaagcattttctccaaatacaaaaattat
tcataaaaggttgtgccatccttaatcattaattattcactattgctaaa
tggataatggtggatattctcctcccgcccccggtttttttgagacaggg
tttctctgtgtagtcctggctgtcctagaactcactgtatagaccaggct
ggccttgaactcagaaatccgcttgcctctgcctctcaagtgctgggatt
aaaggcgtgcaccaccactccccgaccaatcacatacttgttgtcagctg
atgaaatctgtgtctgtgtctcaaatatagataaatgaggctagcaaaat
gactctggttgcagaagactcaagattagcttttaacactcaaaacaagt
agttcacacatgcctgcaacttcagctcctagggattgaatgctcccagc
tttcctcctcagggacttgatgcacatggtatatacaactcatacaggca
gaagacacgcaatttattaaataaatgtactactattacagcccatttag
ttgcatgctctttacttattccgccttagaaggatggtgtacataaccat
tatttagcatccctgggccccaggtgaattgtctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50179810_50180661
seq2: B6Ng01-163C16.b_42_893

seq1  GAATTCAGTTTGACTTATCTTGCAAAAGTCTTGAGCATGCTGTCTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGACTTATCTTGCAAAAGTCTTGAGCATGCTGTCTTAACT  50

seq1  GCTCTGAATGTATATGTGGAGCTGCCCTGCTGTGTCTGGAAAACATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAATGTATATGTGGAGCTGCCCTGCTGTGTCTGGAAAACATAGTT  100

seq1  TCCTTATCATCATGCATTGCCTTAGACTCTTACACTCCTTCTGCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCATCATGCATTGCCTTAGACTCTTACACTCCTTCTGCCCTCTC  150

seq1  TTGTCAGTGCTGATCACCATCTAAATTAAAAAGAAGATTCTCTGATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTGCTGATCACCATCTAAATTAAAAAGAAGATTCTCTGATAAGG  200

seq1  GCTGAGAGATGATCTATGGATATAATAATAAGTTATTTAATATATTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGATGATCTATGGATATAATAATAAGTTATTTAATATATTGTCA  250

seq1  ATTTAGCAGAATAATACCAGTAAGTTCTCTCCCAGAGTCCATATCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAGAATAATACCAGTAAGTTCTCTCCCAGAGTCCATATCTGTCT  300

seq1  AGCCACAGATTCCTTGTCCTATTAATGGAAGGTTAATTAATGGTGGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGATTCCTTGTCCTATTAATGGAAGGTTAATTAATGGTGGTTAG  350

seq1  AACGCCCCTGTCATCGGTCCTCTGAGCCAGCGGCGACGCGAACTACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCCCTGTCATCGGTCCTCTGAGCCAGCGGCGACGCGAACTACACAG  400

seq1  ACACCAAGGCGGGTTCACGCATCAACGTCTTTACTTGTGGCTTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGGCGGGTTCACGCATCAACGTCTTTACTTGTGGCTTTTTCTTT  450

seq1  TACAGCTCTTTTCTCCGGCAGCCTCTTCTCCCTCCATCCTTCTCTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCTTTTCTCCGGCAGCCTCTTCTCCCTCCATCCTTCTCTCAGCA  500

seq1  AGAGCTAAACTCTTTCTACTTAGGGCAAGGCTATATTCCTAACTCCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAACTCTTTCTACTTAGGGCAAGGCTATATTCCTAACTCCCAGA  550

seq1  AACAACAGCTTCTCTTAGTACTACTTCTACTCACGGCAAGGGCTAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGCTTCTCTTAGTACTACTTCTACTCACGGCAAGGGCTAAAACT  600

seq1  CCTCACTACTCTACTTCTGGCTTCTACTTAGGGCAAGGGCTAAACAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTACTCTACTTCTGGCTTCTACTTAGGGCAAGGGCTAAACAACAA  650

seq1  CTCCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTA  700

seq1  CATATTTTCCTCAATTACATTTCCAATGCTACCCCAAAAGTCCCCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCCTCAATTACATTTCCAATGCTACCCCAAAAGTCCCCCATAC  750

seq1  CCTCCCCCCCCCCCACTTCTCTACCCACCCATTCCCA-TTTTTTTGGCCC  799
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCT-CCCCCCCCCCACTTCTCTACCCACCCATTCCCATTTTTTTTGGCCC  799

seq1  TGGCATTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCT  849

seq1  CTC  852
      |||
seq2  CTC  852

seq1: chr10_50320010_50321143
seq2: B6Ng01-163C16.g_68_1205 (reverse)

seq1  GCTGAGACAA-TCAACTTGGGCC--AGGATGCTAAATAATGGTTATGTAC  47
      |||||||||| ||| || |||||   ||||||||||||||||||||||||
seq2  GCTGAGACAATTCACCTGGGGCCCAGGGATGCTAAATAATGGTTATGTAC  50

seq1  TTCATCC-TCTTAGGCGTATTAAGTAA--AGCATGC-ACTTAATGTGCTG  93
        ||||| ||| ||||| | |||||||  ||||||| ||| |||| ||||
seq2  ACCATCCTTCTAAGGCGGAATAAGTAAAGAGCATGCAACTAAATGGGCTG  100

seq1  TAATAGTAGTACATTTATTTATTTAATTGCGTGTCTTTCTGCCTGTATGA  143
      ||||||||||||||||||||| | ||||||||||| ||||||||||||||
seq2  TAATAGTAGTACATTTATTTAATAAATTGCGTGTC-TTCTGCCTGTATGA  149

seq1  GTTTGTATATACCATGTGCATCAGGTCCCTGAGGAGGAAAGCTGGGAGCA  193
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  G-TTGTATATACCATGTGCATCAAGTCCCTGAGGAGGAAAGCTGGGAGCA  198

seq1  TTCAATCCCTAGGAGCTGGAGTTGCAGGCATGTGTGAACTACTTGTTTTG  243
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCAATCCCTAGGAGCTGAAGTTGCAGGCATGTGTGAACTACTTGTTTTG  248

seq1  AGTGTTAAAAGCTTAATCTTGAGTCTTCTGCAACCAGAGTCATTTTGCTA  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAAAGC-TAATCTTGAGTCTTCTGCAACCAGAGTCATTTTGCTA  297

seq1  GCCTCATTTATCTATATTTGAGACACAGACACAGATTTCATCAGCTGACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTATCTATATTTGAGACACAGACACAGATTTCATCAGCTGACA  347

seq1  ACAAGTATGTGATTGGTCGGGGAGTGGTGGTGCACGCCTTTAATCCCAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATGTGATTGGTCGGGGAGTGGTGGTGCACGCCTTTAATCCCAGC  397

seq1  ACTTGAGAGGCAGAGGCAAGCGGATTTCTGAGTTCAAGGCCAGCCTGGTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGGCAGAGGCAAGCGGATTTCTGAGTTCAAGGCCAGCCTGGTC  447

seq1  TATACAGTGAGTTCTAGGACAGCCAGGACTACACAGAGAAACCCTGTCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGAGTTCTAGGACAGCCAGGACTACACAGAGAAACCCTGTCTC  497

seq1  AAAAAAACCGGGGGCGGGAGGAGAATATCCACCATTATCCATTTAGCAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCGGGGGCGGGAGGAGAATATCCACCATTATCCATTTAGCAAT  547

seq1  AGTGAATAATTAATGATTAAGGATGGCACAACCTTTTATGAATAATTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAATTAATGATTAAGGATGGCACAACCTTTTATGAATAATTTTT  597

seq1  GTATTTGGAGAAAATGCTTTCTAATTGTAAAGCTCCTACTAGGAATGGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAGAAAATGCTTTCTAATTGTAAAGCTCCTACTAGGAATGGAG  647

seq1  AGATGTTTCAAACTTCCTTTAATTCCAAGCATCTAAACCTGTTCCTAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTCAAACTTCCTTTAATTCCAAGCATCTAAACCTGTTCCTAGAA  697

seq1  CATCCCTAGAGATTCAGTTTATAAACATGTGAAGATATCTTTAGTTCACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAGAGATTCAGTTTATAAACATGTGAAGATATCTTTAGTTCACT  747

seq1  TGATGTAATTGTCTCCCTGGCTTGAGTCTGCTAACCTAGGCCTAGTCTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATTGTCTCCCTGGCTTGAGTCTGCTAACCTAGGCCTAGTCTTG  797

seq1  GAAGCTTCTCGCCTCTGTACAATCTGATCTAAGCTTAGAATGTTCTCAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCTCGCCTCTGTACAATCTGATCTAAGCTTAGAATGTTCTCAGC  847

seq1  CCCTGAGACTTACTGCTGCATAAGCTCACTCTTTTTAGTTCTTTCTGAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTTACTGCTGCATAAGCTCACTCTTTTTAGTTCTTTCTGAAC  897

seq1  ACTGGCTGGCTGGTTCAACTCAGCTGTTCTGGCTCAAACTCCTCTGCAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGCTGGTTCAACTCAGCTGTTCTGGCTCAAACTCCTCTGCAGT  947

seq1  CTATATTCCAGCCACAGTGATTGAAGGTGTTATGTATGCTAAAGGCTGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCCAGCCACAGTGATTGAAGGTGTTATGTATGCTAAAGGCTGAG  997

seq1  CCACACCACAACTAGAAACAAGGTTTCTCAGTAAATAACACAATCTCTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACAACTAGAAACAAGGTTTCTCAGTAAATAACACAATCTCTAT  1047

seq1  TTTTATGTTTGTAAAATACATAAGCATACATTTTGTATTGTGTGAGATGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTTGTAAAATACATAAGCATACATTTTGTATTGTGTGAGATGT  1097

seq1  GTGCAGGTAGTTAATGATCTGTTCCTGTGTTTTCTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTAGTTAATGATCTGTTCCTGTGTTTTCTGAATTC  1138