BAC Information

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BAC

Clone NameB6Ng01-163E08
Chromosome10 (Build37)
Map Location 13,688,162 - 13,829,133
singlet/doubletdoublet
Overlap geneHivep2
Upstream geneSf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E08.bB6Ng01-163E08.g
ACCDH955901DH955902
length1,1641,034
definitionDH955901|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E08, 5' end.DH955902|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,827,951 - 13,829,133)(13,688,162 - 13,689,207)
sequence
gaattcactcatgagtgggtatccaaaacatgcacaagaacctttcttgt
ttggtatccaaagaggagccttctaaaccctcggacatgagcatgaaagt
gcaaggtgctttggacctgccccgctgatctctcgctagcccaagaattt
tatttttacttcaatctagacatgacattttcgagcctacttagtggccc
tctttggtttagaaagctaacatataaacttgtgtcctctctgaaggaag
tatctagtttgtttgcttgctttttttctaggcaaatttttggtcactag
catcactgccaccatgaagtacttgttcttttcttctctcagccacatta
aaaaaaatatgaacacacatctcagaaaggggggatattgcaagaagcat
agtaagcactgttaggaaacatttccaaaattgaatctatttgtacttta
taatcatgtttggacagcacaactagaaaaactaattagtttcaggtcta
caaaaaaaaaaaaaaaagaaaagaaaaaagaaaaaaggaaaccacccaag
tattttcctctttctgaatctttaactatagcatattgattctagaaggt
tttacaattgcaacagagaaagtgcgtgtaaacaatagaattcaatagaa
acacgttattttttccttctctaagaaattgtgtatgaacagtatgaagt
aatatggacaaattatattatctttgagacatggtcaagtttccagctac
tgtcaagtctcagcaggaggcatggaaaatatatttgacatattcttgga
cacagataacttatgctggcagaccccacaccccaccttctgcaatctac
tatagtgttggatgaagattctgttgagcttccaagggttaaaaatatca
gatttagacacatgtactttaaccagatttgagtccatctgatcagtctc
aattctgcctgatcggttacatacaggcactatgatccttagtgctattt
aaagttaacattgaagagtctggaagacaagggtcattttgattattcag
ctgatctcgatttaatgcatcttgcctctcaaggaaatgtacattaagtg
tgtggcgctttggattccagtgagttagtccaacattatgatcaatgcca
ccgctttctggtgt
gaattcacacaggaagctgtgtgtgcaactgacattgcaaaacccttatg
ctctgcacaggtatttaggcctaaaatgaacacagagaggcttgcttccg
gtcctttcattataatagaaaaattgaactgatttttttcgttcttcctt
ttctgccattttaaaaataactctatttaaaaactatattggtactttct
tccgcttccaaagcaagacttcaataactcacacgagggctgtttttgtt
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttgtcaatgcagagtccttttcaagggctatttttttctct
tcaacaatttcttttgcctgaataatccaacccagaaattacttgaagta
ttaataagattcatactaattacattttcagtacccccccccccagaaaa
aggccatggaactttagacccatttcctttagtgataatgattctatttg
tccttgagcaaaccaagttgttttagatatattcacatatcgttacatac
ataaatgtgttaggatctgtgaatgcctggttgcttatatgtcttatagg
catgccaagatacaatgttacaagttacctaagacggttgtataatgggc
ttgctgggtttgagttttaggatgcgggtccagcaactttattaaaactg
gaacgctgtgcatgtgaataaggtagaactcattttttattgctaagaga
aaattctggtggagccctaacgagtcgtgatatcaggttacaactgcatt
cttattccaagcagtcagggagtctgcatatcacacacggacagtgtgct
tcgagtgtctaagctctgtgacactacgcttgaagtgccagtatactccc
atgtgcagaatataaacctggagatacagcatatagattcaaatgattgt
attgaaaaaaaaatagacagggccgactacttttgaaattttctaatatg
tttttttttgctttgagaataaggaggggataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13827951_13829133
seq2: B6Ng01-163E08.b_46_1209 (reverse)

seq1  ACACCAGAAAGCCCGTGTTGGGCATTGATCACTAATGTT-GACTAAACCC  49
      ||||||||||||    | | ||||||||||| ||||||| ||||||   |
seq2  ACACCAGAAAGC----GGT-GGCATTGATCA-TAATGTTGGACTAA---C  41

seq1  CAACTGGGAATTCAAAGCG-CACACACTCTAATGTTTACATTTCCTTGAG  98
        ||| ||||| ||||||| |||||||| |||||  ||||||||||||||
seq2  TCACT-GGAATCCAAAGCGCCACACACT-TAATG--TACATTTCCTTGAG  87

seq1  AGGCAAGATTGCTTTAAATC-ACATACGACTGATTAATCAAAATGACACT  147
      |||||||| ||| ||||||| | || |  |||| ||||||||||||| ||
seq2  AGGCAAGA-TGCATTAAATCGAGAT-CAGCTGAATAATCAAAATGACCCT  135

seq1  TTGTTTCCAGACTCTTCATTGTTTAAATTTTAAATAGCACTTAGGATCAT  197
      |   |||||||||||||| ||||  || ||||||||||||| ||||||| 
seq2  TGTCTTCCAGACTCTTCAATGTT--AACTTTAAATAGCACTAAGGATCA-  182

seq1  TAGTGCTTGTATGTTAACCGATTAGGCAGATTTGAGACTTGATCAGATGG  247
      |||||| |||||| |||||||| ||||||| ||||||| |||||||||||
seq2  TAGTGCCTGTATG-TAACCGATCAGGCAGAATTGAGAC-TGATCAGATGG  230

seq1  ACTCAAATCTGGTTAAAGTACATGTGTCTAAATCTGATTTTTTTTAACCC  297
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  ACTCAAATCTGGTTAAAGTACATGTGTCTAAATCTGA-TATTTTTAACCC  279

seq1  TTTGGATGCTCAACAGAATCTTCATCCAACACTATAGTAGACTGCAGAAG  347
       ||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  -TTGGAAGCTCAACAGAATCTTCATCCAACACTATAGTAGATTGCAGAAG  328

seq1  GTTGGGGTGTGGGGTCTGCCAGCCTAAGTTATCTGTGTCCAAGAATATGT  397
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  G-TGGGGTGTGGGGTCTGCCAGCATAAGTTATCTGTGTCCAAGAATATGT  377

seq1  CAAATATATTTTCCATGCCTCCTGCTGAGACTTGACAGTAGCTGGAAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTTTCCATGCCTCCTGCTGAGACTTGACAGTAGCTGGAAACT  427

seq1  TGACCATGTCTCAAAGATAATATAATTTGTCCATATTACTTCATACTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGTCTCAAAGATAATATAATTTGTCCATATTACTTCATACTGTT  477

seq1  CATACACAATTTCTTAGAGAAGG-AAAAATAACGTGTTTCTATTGAATTC  546
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATACACAATTTCTTAGAGAAGGAAAAAATAACGTGTTTCTATTGAATTC  527

seq1  TATTGTTTACACGCACTTTCTCTGTTGCAATTGTAAAACCTTCTAGAATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTACACGCACTTTCTCTGTTGCAATTGTAAAACCTTCTAGAATC  577

seq1  AATATGCTATAGTTAAAGATTCAGAAAGAGGAAAATACTTGGGTGGTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTATAGTTAAAGATTCAGAAAGAGGAAAATACTTGGGTGGTTTC  627

seq1  CTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTGTAGACCTGAAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTGTAGACCTGAAACT  677

seq1  AATTAGTTTTTCTAGTTGTGCTGTCCAAACATGATTATAAAGTACAAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTTCTAGTTGTGCTGTCCAAACATGATTATAAAGTACAAATA  727

seq1  GATTCAATTTTGGAAATGTTTCCTAACAGTGCTTACTATGCTTCTTGCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATTTTGGAAATGTTTCCTAACAGTGCTTACTATGCTTCTTGCAA  777

seq1  TATCCCCCCTTTCTGAGATGTGTGTTCATATTTTTTTTAATGTGGCTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCCCTTTCTGAGATGTGTGTTCATATTTTTTTTAATGTGGCTGAG  827

seq1  AGAAGAAAAGAACAAGTACTTCATGGTGGCAGTGATGCTAGTGACCAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGAACAAGTACTTCATGGTGGCAGTGATGCTAGTGACCAAAA  877

seq1  ATTTGCCTAGAAAAAAAGCAAGCAAACAAACTAGATACTTCCTTCAGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTAGAAAAAAAGCAAGCAAACAAACTAGATACTTCCTTCAGAGA  927

seq1  GGACACAAGTTTATATGTTAGCTTTCTAAACCAAAGAGGGCCACTAAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGTTTATATGTTAGCTTTCTAAACCAAAGAGGGCCACTAAGTA  977

seq1  GGCTCGAAAATGTCATGTCTAGATTGAAGTAAAAATAAAATTCTTGGGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGAAAATGTCATGTCTAGATTGAAGTAAAAATAAAATTCTTGGGCT  1027

seq1  AGCGAGAGATCAGCGGGGCAGGTCCAAAGCACCTTGCACTTTCATGCTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGAGATCAGCGGGGCAGGTCCAAAGCACCTTGCACTTTCATGCTCA  1077

seq1  TGTCCGAGGGTTTAGAAGGCTCCTCTTTGGATACCAAACAAGAAAGGTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTCCGAGGGTTTAGAAGGCTCCTCTTTGGATACCAAACAAGAAAGGTTC  1127

seq1  TTGTGCATGTTTTGGATACCCACTCATGAGTGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTTTTGGATACCCACTCATGAGTGAATTC  1164

seq1: chr10_13688162_13689207
seq2: B6Ng01-163E08.g_65_1098

seq1  GAATTCACACAGGAAGCTGTGTGTGCAACTGACATTGCAAAACCCTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGGAAGCTGTGTGTGCAACTGACATTGCAAAACCCTTATG  50

seq1  CTCTGCACAGTTATTTAGGCCTAAAATGAACACAGAGAGGCTTGCTTCCG  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACAGGTATTTAGGCCTAAAATGAACACAGAGAGGCTTGCTTCCG  100

seq1  GTCCTTTCATTATAATAGAAAAATTGAACTGATTTTTTTCGTTCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCATTATAATAGAAAAATTGAACTGATTTTTTTCGTTCTTCCTT  150

seq1  TTCTGCCATTTTAAAAATAACTCTATTTAAAAACTATATTGGTACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATTTTAAAAATAACTCTATTTAAAAACTATATTGGTACTTTCT  200

seq1  TCCACTTCCAAAGCAAGACTTCAATAACTCACAGGAGGGCTGTTTTTGTT  250
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCGCTTCCAAAGCAAGACTTCAATAACTCACACGAGGGCTGTTTTTGTT  250

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  300

seq1  TTCTTCTTCTTGTCAATGCAGAGTCCTTTTCGAGGGCTATTTTTTTCTCT  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTCTTCTTGTCAATGCAGAGTCCTTTTCAAGGGCTATTTTTTTCTCT  350

seq1  TCAGCAGTTTCTTTTGCCTGAATAATCAAACCCAGAAATTACTTGAAGTA  400
      ||| || |||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAACAATTTCTTTTGCCTGAATAATCCAACCCAGAAATTACTTGAAGTA  400

seq1  TTAATAAGATTCATACTAATTACATTTTCAGTACCCCCCCCCCCAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGATTCATACTAATTACATTTTCAGTACCCCCCCCCCCAGAAAA  450

seq1  AGGCCATGGAACTTTAGACCCATTTCCTTTAGTGATAATGATTCTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGAACTTTAGACCCATTTCCTTTAGTGATAATGATTCTATTTG  500

seq1  TCCTTGAGCAAACCAAGTTGTTTTAGATATATTCACATATCGTTACATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGCAAACCAAGTTGTTTTAGATATATTCACATATCGTTACATAC  550

seq1  ATAAATGTGTTAGGATCTGTGAATGCCTGGTTGCTTATATGTCTTATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGTTAGGATCTGTGAATGCCTGGTTGCTTATATGTCTTATAGG  600

seq1  CATGCCAAGATACAATGTTACAAGTTACCTAAGACGGTTGTATAATGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAAGATACAATGTTACAAGTTACCTAAGACGGTTGTATAATGGGC  650

seq1  TTGCTGGGTTTGAGTTTTAGGATGCGGGTCCAGCAGTTTTATTAAAACTG  700
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTGCTGGGTTTGAGTTTTAGGATGCGGGTCCAGCAACTTTATTAAAACTG  700

seq1  GAACGCTGTGCATGTGAATAAGGTAGAACTCATTTTTTATTGCTAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGTGCATGTGAATAAGGTAGAACTCATTTTTTATTGCTAAGAGA  750

seq1  AAATTCTGGTGGAGCCCTAACGAGTCGTGATATCAGGTTACAACTGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGGTGGAGCCCTAACGAGTCGTGATATCAGGTTACAACTGCATT  800

seq1  CTTATTCCAAGCAGTCAGGGAGTCTGCAATATCCACAGACGGACAGTGTG  850
      ||||||||||||||||||||||||||| |||| |||| ||||||||||||
seq2  CTTATTCCAAGCAGTCAGGGAGTCTGC-ATAT-CACACACGGACAGTGTG  848

seq1  CTTCGAGTGTCATAATCTCTTTGACCACTAGGCTTGAAGTGGGCAGTATA  900
      ||||||||||| ||| |||| ||| ||||| ||||||||| | |||||||
seq2  CTTCGAGTGTC-TAAGCTCTGTGA-CACTACGCTTGAAGT-GCCAGTATA  895

seq1  GTTCTCATGTGCAGAAAAATAAAACATTATGATTACAGTATATATAATTA  950
        || ||||||||||| |   |||| |   || ||||| |||||  ||| 
seq2  -CTCCCATGTGCAGAATA--TAAACCTGGAGA-TACAGCATATA-GATTC  940

seq1  AAATAAATGTTATGATAAAATAAATAGTACAGGGCCGACT-CTTTTGAAA  999
      |||| | |||  ||| |||| |||||| |||||||||||| |||||| ||
seq2  AAATGATTGTATTGA-AAAAAAAATAG-ACAGGGCCGACTACTTTTG-AA  987

seq1  ATTATCTAATATAGTTTTTTTTGCTTTGAGAAT-AGGAGGGGCATAAC  1046
      ||| ||||||||  ||||||||||||||||||| |||||||| |||||
seq2  ATTTTCTAATATGTTTTTTTTTGCTTTGAGAATAAGGAGGGG-ATAAC  1034