BAC Information

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BAC

Clone NameB6Ng01-164I01
Chromosome10 (Build37)
Map Location 33,079,581 - 33,233,285
singlet/doubletdoublet
Overlap geneTrdn, A330019N05Rik
Upstream geneTcba1, EG667761
Downstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164I01.bB6Ng01-164I01.g
ACCDH956809DH956810
length1,0821,017
definitionDH956809|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I01, 5' end.DH956810|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,232,190 - 33,233,285)(33,079,581 - 33,080,605)
sequence
gaattcaggaacataggggaagcagtagtgaattaaagagagagagagag
agagagagagagagagagagagagagaatatttgagggtaaatagtgggg
ctgactcattgaccttggcattcttctttccagatctcagtcagtagtgg
accctacagcactgaaacgaatggataaaagtgaagaagaaaacatgcag
cctttacttgctctggactgagaacttctccacccctacaccatggatta
aaaatgggaggtcctggctttcagcaacagggacaacactgtgggattga
cctgctggaaaactttactcatgttcatgtagcataatgcacacgacatc
tggctttcacatttgcctaaaccatgggtgccctgagctagattttaaaa
agtcaataatttattctgtaagtgccaagttctttgtaaatacaatattg
tggtcacatctagtttgtaaattttgttagtaatttagtttgggaaagat
tgactcacatgtttgagccagtgatatggactacaataagaagcttaagg
acatgtaacctataaaatttaattaaatgtatccctgtttcctatgaagc
catatatctgctatcatagtgattatttcaatattttcctacaaaacact
gtcattattcaaatatacttgggtcacagaaggttaattatctcctggaa
attgttattattaatgttttcctgcttagtaatttttgtttcagaggaac
ttttctggaaccatcactggctgcattctgaagaaagaaaatggctgatg
agctggaaaactgaaccaaatggcaaatcgtctccgttgtgtgatttaga
gttttttttttcagaaaatgttttttcccaattaagatgaggaattctaa
aaagaatgggttttttgtttttgttcgtttgttttgtctaaatgattgtc
ttaacaatgttcctttacttaagttgcatgtaacccctattgataaactt
taggattatattttcacccaaagtaatgagagttagttctgaatcattga
catttgccataaatttgtacttgaagatgagg
gaattctctgttaaaatttataccctatttttaattgaactgatttgttt
gttgatgtctggctttttgagctctttacgtattttggatattagtcatc
tataagatgtggaattggtgaaaatcctttttcattctgcacggtgccat
ttaataggatatatatttttatcatgttcattccctctccttccagattt
aatcataaatacatataacaattgataagtattttgttttcttttactga
aaatgttttatacaatgtattttgattgtcattttctcttcccttactct
tctcagatcttgcaactctctattctatcattatcaatacattttctgag
aaaaaaaaacagacatctaaggaataattaaactaaactaaactacaata
aaataaaataaataaaataaaatacaaaaaagaaaaacaaatcaggatgg
gataaaaccatgaaacaagggccaaacaggggagaagggcaataaacact
tacagactcatggtagaccactgaaccattcgcatcatggattatcagtg
ttgtctctgatactaggagattttttttcttttctttttttttttttttt
ttttttttaagatttatttatttatttattatatgtaaatacattgtagc
tgtcttcagactctccagaagagggggtcagatcttgttacggatggttg
tgagccaccatgtggttgctgggatttgaactctggaccttcggaagagc
agtcgggtgctctaacccactgagccatctcaccagacccagagattttt
tttcaatcagcattatttatagctgaattggagagccagctacagatacc
ataatgcttgttagagaagcttgtccctatactctattcttctaaagcca
ttcacgatgtatcatccataattggtgcaggagtttctacaaaagagaac
tatgaaatatgcatgtcataatggagattcactagagtagttattggtag
gacctgggagttcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33232190_33233285
seq2: B6Ng01-164I01.b_44_1125 (reverse)

seq1  CCTCATCTTCAAGTGACAAATTTTATGTGCAAAATTGTCAAAATGATTCA  50
      |||||||||||||| ||||| |||||| |||||  ||||  |||||||||
seq2  CCTCATCTTCAAGT-ACAAA-TTTATG-GCAAA--TGTC--AATGATTCA  43

seq1  GGAACTAACTCTCATTTACTTTGGGTGAAAATAT-ATTCTAAAGTATATC  99
       ||||||||||||| ||||||||||||||||||| || ||||||| ||||
seq2  -GAACTAACTCTCA-TTACTTTGGGTGAAAATATAATCCTAAAGTTTATC  91

seq1  AGATAGGGGTTACAATGGCAACTTAAGTAAAGGAACATTGTTAAGACAAT  149
      | ||||||||||||   |||||||||||||||||||||||||||||||||
seq2  A-ATAGGGGTTACA--TGCAACTTAAGTAAAGGAACATTGTTAAGACAAT  138

seq1  CATTTAGACAAAAACAAACGAACAAAAACAAAAAACCCATTCTTTTTTAG  199
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  CATTTAGAC-AAAACAAACGAACAAAAACAAAAAACCCATTC-TTTTTAG  186

seq1  AATTCCTCATCTTAATTGGGAAAAAACATTTTCTTGAAAAAAAAAACTCT  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTCCTCATCTTAATTGGGAAAAAACATTTTC-TGAAAAAAAAAACTCT  235

seq1  AAATCACACAACGGAGACGATTTGCCATTTGGTTCAGTTTTCCAGCTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACAACGGAGACGATTTGCCATTTGGTTCAGTTTTCCAGCTCAT  285

seq1  CAGCCATTTTCTTTCTTCAGAATGCAGCCAGTGATGGTTCCAGAAAAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTTTCTTTCTTCAGAATGCAGCCAGTGATGGTTCCAGAAAAGTT  335

seq1  CCTCTGAAACAAAAATTACTAAGCAGGAAAACATTAATAATAACAATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAACAAAAATTACTAAGCAGGAAAACATTAATAATAACAATTTC  385

seq1  CAGGAGATAATTAACCTTCTGTGACCCAAGTATATTTGAATAATGACAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATAATTAACCTTCTGTGACCCAAGTATATTTGAATAATGACAGT  435

seq1  GTTTTGTAGGAAAATATTGAAATAATCACTATGATAGCAGATATATGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTAGGAAAATATTGAAATAATCACTATGATAGCAGATATATGGCT  485

seq1  TCATAGGAAACAGGGATACATTTAATTAAATTTTATAGGTTACATGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAAACAGGGATACATTTAATTAAATTTTATAGGTTACATGTCCT  535

seq1  TAAGCTTCTTATTGTAGTCCATATCACTGGCTCAAACATGTGAGTCAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCTTATTGTAGTCCATATCACTGGCTCAAACATGTGAGTCAATC  585

seq1  TTTCCCAAACTAAATTACTAACAAAATTTACAAACTAGATGTGACCACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAACTAAATTACTAACAAAATTTACAAACTAGATGTGACCACAA  635

seq1  TATTGTATTTACAAAGAACTTGGCACTTACAGAATAAATTATTGACTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTTACAAAGAACTTGGCACTTACAGAATAAATTATTGACTTTT  685

seq1  TAAAATCTAGCTCAGGGCACCCATGGTTTAGGCAAATGTGAAAGCCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTAGCTCAGGGCACCCATGGTTTAGGCAAATGTGAAAGCCAGAT  735

seq1  GTCGTGTGCATTATGCTACATGAACATGAGTAAAGTTTTCCAGCAGGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGCATTATGCTACATGAACATGAGTAAAGTTTTCCAGCAGGTCA  785

seq1  ATCCCACAGTGTTGTCCCTGTTGCTGAAAGCCAGGACCTCCCATTTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGTGTTGTCCCTGTTGCTGAAAGCCAGGACCTCCCATTTTTAA  835

seq1  TCCATGGTGTAGGGGTGGAGAAGTTCTCAGTCCAGAGCAAGTAAAGGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTGTAGGGGTGGAGAAGTTCTCAGTCCAGAGCAAGTAAAGGCTG  885

seq1  CATGTTTTCTTCTTCACTTTTATCCATTCGTTTCAGTGCTGTAGGGTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCTTCTTCACTTTTATCCATTCGTTTCAGTGCTGTAGGGTCCA  935

seq1  CTACTGACTGAGATCTGGAAAGAAGAATGCCAAGGTCAATGAGTCAGCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACTGAGATCTGGAAAGAAGAATGCCAAGGTCAATGAGTCAGCCC  985

seq1  CACTATTTACCCTCAAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTACCCTCAAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1035

seq1  TCTCTCTCTCTTTAATTCACTACTGCTTCCCCTATGTTCCTGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTAATTCACTACTGCTTCCCCTATGTTCCTGAATTC  1082

seq1: chr10_33079581_33080605
seq2: B6Ng01-164I01.g_67_1083

seq1  GAATTCTCTGTTAAAATTTATACCCTATTTTTAATTGAACTGATTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTAAAATTTATACCCTATTTTTAATTGAACTGATTTGTTT  50

seq1  GTTGATGTCTGGCTTTTTGAGCTCTTTACGTATTTTGGATATTAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTCTGGCTTTTTGAGCTCTTTACGTATTTTGGATATTAGTCATC  100

seq1  TATAAGATGTGGAATTGGTGAAAATCCTTTTTCATTCTGCACGGTGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATGTGGAATTGGTGAAAATCCTTTTTCATTCTGCACGGTGCCAT  150

seq1  TTAATAGGATATATATTTTTATCATGTTCATTCCCTCTCCTTCCAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGATATATATTTTTATCATGTTCATTCCCTCTCCTTCCAGATTT  200

seq1  AATCATAAATACATATAACAATTGATAAGTATTTTGTTTTCTTTTACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAATACATATAACAATTGATAAGTATTTTGTTTTCTTTTACTGA  250

seq1  AAATGTTTTATACAATGTATTTTGATTGTCATTTTCTCTTCCCTTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTATACAATGTATTTTGATTGTCATTTTCTCTTCCCTTACTCT  300

seq1  TCTCAGATCTTGCAACTCTCTATTCTATCATTATCAATACATTTTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATCTTGCAACTCTCTATTCTATCATTATCAATACATTTTCTGAG  350

seq1  AAAAAAAAACAGACATCTAAGGAATAATTAAACTAAACTAAACTACAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAGACATCTAAGGAATAATTAAACTAAACTAAACTACAATA  400

seq1  AAATAAAATAAATAAAATAAAATACAAAAAAGAAAAACAAATCAGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAATAAAATAAAATACAAAAAAGAAAAACAAATCAGGATGG  450

seq1  GATAAAACCATGAAACAAGGGCCAAACAGGGGAGAAGGGCAATAAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACCATGAAACAAGGGCCAAACAGGGGAGAAGGGCAATAAACACT  500

seq1  TACAGACTCATGGTAGACCACTGAACCATTCGCATCATGGATTATCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTCATGGTAGACCACTGAACCATTCGCATCATGGATTATCAGTG  550

seq1  TTGTCTCTGATACTAGGAGATTTTTTTTCTTTTCTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGATACTAGGAGATTTTTTTTCTTTTCTTTTTTTTTTTTTTTT  600

seq1  TTTTTTTTAAGATTTATTTATTTATTTATTATATGTAAATACATTGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTTATTTATTTATTTATTATATGTAAATACATTGTAGC  650

seq1  TGTCTTCAGACTCTCCAGAAGAGGGGGTCAGATCTTGTTACGGATGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACTCTCCAGAAGAGGGGGTCAGATCTTGTTACGGATGGTTG  700

seq1  TGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGC  750

seq1  AGTCGGGTGCTCTAACCCACTGAGCCATCTCACCAGACCCAGAGATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGGTGCTCTAACCCACTGAGCCATCTCACCAGACCCAGAGATTTTT  800

seq1  TTTCAATCAGCATTATTTATAGCTGAATTGGAGAGCCAGCTACAGATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCAGCATTATTTATAGCTGAATTGGAGAGCCAGCTACAGATACC  850

seq1  ATAATGCTTGTTAGAGAAGCTTGTCCCTATAACTCTATTCTTCTAAAGCC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAATGCTTGTTAGAGAAGCTTGTCCCTAT-ACTCTATTCTTCTAAAGCC  899

seq1  ATTCACGATGTATCAATCCATA--TTGTGCAGGAGTTTCTACAGAAAGAG  948
      |||||||||||||| |||||||  | ||||||||||||||||| ||||||
seq2  ATTCACGATGTATC-ATCCATAATTGGTGCAGGAGTTTCTACA-AAAGAG  947

seq1  AACCAATTGAAAATATGCATGTCATTAATGGAGATTCACTAGAGTAGGTT  998
      ||| |  || |||||||||||||| ||||||||||||||||||||| |||
seq2  AACTA--TG-AAATATGCATGTCA-TAATGGAGATTCACTAGAGTA-GTT  992

seq1  ATATGGTAGGGACTGGGGAGTTCAACA  1025
      || ||||| ||||  ||||||||||||
seq2  AT-TGGTA-GGACCTGGGAGTTCAACA  1017