BAC Information

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BAC

Clone NameB6Ng01-164J17
Chromosome17 (Build37)10 (Build37)
Map Location 40,418,816 - 40,419,438104,053,602 - 104,054,338
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
Downstream geneCrisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J17.bB6Ng01-164J17.g
ACCDH956887DH956888
length1,107960
definitionDH956887|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J17, 5' end.DH956888|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,418,816 - 40,419,438)(104,053,602 - 104,054,338)
sequence
gaattctcatctgaggaatacggaactacctgaaaaaatgttcagaatcc
ttaatcaacagggaaaagcaaatcaaaataaccctgagattccacctcac
accactcagaatgactaagatcaaaaattcaggtgacagcagatgctggc
aaggatgtggagaaagaggaacactcctccattgttggtgtgattgcaag
cttgtacaaccactcttgaaatcagtctggcagttcttcagaaaattgga
catagtactaccggaggatcccgcaatacctctcctgggcatatttccag
aagatattccaaatgataagaaggacacatcctccactatgttcatagta
gccttacttataatagccagaagctggaaataacccagatgcccctcaac
agatgaatggatacagaaaatgtggtatatttacacaatggagtactact
cagctattaaaaagaatgaatttttgaaatttctagcaaaatggatggac
ctggagggcatcatcctgagtgtggtaacccaaccacaaaagaactcaca
caatatgtcctcactgataagtggatattagcttctgaagcttagaatac
ccaagatataagatacaatttgtgaaacacatgaaactcaagaagaagga
agaccaaagtatggacactttgccccttcttagaattcggaacaaaacct
ccatggaaggagttacagagatagttttcgagctgacaagaggatggacc
atctagagaatgccatatctggacatccatcccataatcaggctccaaac
gctgacagcattgcatacaatagcaagattttgctgaaaggacccagata
tagctgtcccttgtgagactatgctggggcctagcaaacacagaagtgga
tgcttacagtcagctattgcatagatcacagggtccccaatggaggagct
agagaaagtacccaaggagctaaagggatctgcatactaaatacaaattg
attccagaacacatcaaagatatctcttgtgtaatttctgcccagtagcc
tgtataaaaacatacacacttcagtatttatatttataagctatatgcag
aattggg
gaattcttacctgatgaatgacaagtggctgagaagcaccttaaaaaaaa
tgttcaggatccttaatcatgagggaaatgtaaatcaaaacaaccctgag
attccacctcacaccagtcataatggctaagatcaaaaattcaggtgaca
gcagatgctgacgaggatgtggagaaagaggaacactcctccattgatgg
tgggattgcaaggtggtacaaccactctggaaatcagtctggcggttcct
caaaaaattggacattgtactaccagaggatcccgcaatacctctcctgg
gcatatatccagaagatgttccaactggtaagaaggacacatgctccact
atgttcataacagccttatttataatagccagaaactggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctaggc
aaatggatggacctggagggcatcatcctgagtgaggtaacccaatctca
aaagaactcacatgatatgtacttactgataagtggatattagcccagag
acttagaatacccaagatataagatacaatttgcaaaacacatgaaactc
aagaagaacgaagaccaaagtgtggacactttttccctccttagaattgg
gaacaaaacacccatggaaggagttgcagagacaaagtttggagctgaga
caagatggaccatctagagactgtcatattgtataattttaaaatgtgtt
ttattcctcttttttgatccttttttcttttttaaaataatttcattttt
aatttattttttacactccatattccattccctgccccccacccacactc
cattggctccacatcccacactctgccctactccacctcatctcacttgg
atgcccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40418816_40419438
seq2: B6Ng01-164J17.b_532_1147

seq1  TGGATGGACCTGGAGGGCATCATCCTGAGTGTGGTAACCCAACCACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGACCTGGAGGGCATCATCCTGAGTGTGGTAACCCAACCACAAAA  50

seq1  GAACTCACACAATATGTCCTCACTGATAAGTGGATATTAGCTTCTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACACAATATGTCCTCACTGATAAGTGGATATTAGCTTCTGAAGC  100

seq1  TTAGAATACCCAAGATATAAGATACAATTTGTGAAACACATGAAACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATACCCAAGATATAAGATACAATTTGTGAAACACATGAAACTCAA  150

seq1  GAAGAAGGAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTCGGA  200

seq1  ACAAAACCTCCATGGAAGGAGTTACAGAGATAGTTTTCGAGCTGACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTCCATGGAAGGAGTTACAGAGATAGTTTTCGAGCTGACAAGA  250

seq1  GGATGGACCATCTAGAGAATGCCATATCTGGACATCCATCCCATAATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACCATCTAGAGAATGCCATATCTGGACATCCATCCCATAATCAG  300

seq1  GCTCCAAACGCTGACAGCATTGCATACAATAGCAAGATTTTGCTGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACGCTGACAGCATTGCATACAATAGCAAGATTTTGCTGAAAGG  350

seq1  ACCCAGATATAGCTGTCCCTTGTGAGACTATGCTGGGGCCTAGCAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATATAGCTGTCCCTTGTGAGACTATGCTGGGGCCTAGCAAACAC  400

seq1  AGAAGTGGATGCTTACAGTCAGCTATTGCATAGATCACAGGGCCCCCAAT  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAAGTGGATGCTTACAGTCAGCTATTGCATAGATCACAGGGTCCCCAAT  450

seq1  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATACTAA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGC-ATACTAA  499

seq1  ATACAAATTGATTCCAAGAACACATCAAAGATATCTCTTGTGGTAATTTC  550
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  ATACAAATTGATTCC-AGAACACATCAAAGATATCTCTTGT-GTAATTTC  547

seq1  TTGCCCAAGTAAGCCTGTATAAAAACATACACAACTCAGTTATTATATTT  600
       ||||| ||| ||||||||||||||||||||||  |||||  ||||||||
seq2  -TGCCC-AGT-AGCCTGTATAAAAACATACACACTTCAGTATTTATATTT  594

seq1  ATAAGCTATATGCCTAGATTGGG  623
      |||||||||||||  | ||||||
seq2  ATAAGCTATATGCAGA-ATTGGG  616

seq1: chr10_104053602_104054338
seq2: B6Ng01-164J17.g_88_614 (reverse)

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  50
      |||| |||||||||||| ||||||||||||| | ||||||||||||||||
seq2  TTTGAGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCAT  50

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  100
      ||||||||||||||||||||||||||||||||||||||            
seq2  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGC------------  88

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  150
                                                        
seq2  --------------------------------------------------  88

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  200
                                                        
seq2  --------------------------------------------------  88

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  250
                                                        
seq2  --------------------------------------------------  88

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  300
        | ||||                             |||          
seq2  --TGAGTA-----------------------------GTA----------  97

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCT  350
               |||||||||||||||||||||||||||||||||| ||||||
seq2  ---------CTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCT  138

seq1  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAG  400
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  CTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGGCTATTATAAATAAG  188

seq1  GCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATC  450
      |||| |||||| |||||||||||||||||||||||||| |||||  ||||
seq2  GCTGTTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGAACATC  238

seq1  TTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTA  500
      |||||||||||||||||| ||||||||||| |||||||| |||||||| |
seq2  TTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCTGGTAGTACAA  288

seq1  TGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACA  550
      ||||||||||| ||| |||||||||||| |||||||||||||||||||| 
seq2  TGTCCAATTTTTTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACC  338

seq1  AGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  600
      | | ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCTTGCAATCCCACCATCAATGGAGGAGTGTTCCTCTTTCTCCACATCC  388

seq1  TCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTG  650
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCGTCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTATGACTG  438

seq1  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATT  700
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTACATTTCCCTCATGATT  488

seq1  AAGGATGTTGAACA--TTTTTTCAGGTGCTTCTCTGCCA  737
      ||||||  ||||||  |||||| ||||||||||| ||||
seq2  AAGGATCCTGAACATTTTTTTTAAGGTGCTTCTCAGCCA  527