BAC Information

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BAC

Clone NameB6Ng01-164J19
Chromosome12 (Build37)10 (Build37)
Map Location 75,356,631 - 75,357,027104,054,150 - 104,054,642
singlet/doubletsingletsinglet
Overlap geneSyt16
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream gene1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J19.bB6Ng01-164J19.g
ACCDH956891DH956892
length392733
definitionDH956891|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J19, 5' end.DH956892|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,356,631 - 75,357,027)(104,054,150 - 104,054,642)
sequence
tatatgctgtaagcatcagcttttcctatattagtttatatttacagtat
agctctagtacaaattccaacagtttttaaaattcttacattatatttta
actgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtagggt
catgtatagagtataacttgagggaatttgttccctccttcaccatgtgg
gttttgggaaattaaaatcatgtcaggattggtagcaagcacctgcatct
acttatcctcctctttgttctctaaccatacatatatttttttaacttga
caggatgattttgaaattcatgtgcaattaaataattaaaataatctaaa
actttaaactaacaaaaaatcattattttaaagatgaatagg
gaattctggcttcttgaaaaacacagaaatattatgtgaatatgtttctg
ttttaatcccaagtatgggacatgggggctgctttagagtgtccacagca
gctgactatgatttgtcccgtgctgtggcaggggcatgattttgccagct
gaaggtagtatacatttggaagtccggggattcttgagaggtataagaag
atatgggcacaggggaaaattcctgaatagaacagtaatggcttgtgctg
taagatcaagaatcgacaaatgggacctcagaaaattgcaaagcttctgt
aaggcaaaagatatcttcaataagacaaaaaggccaccaacagattggga
aaggatcgttaccaatcctaaataagataggggactaatatccaatatat
atatatatatatatatatatatatatatatatatatatatatatatataa
ctatagaaggtggactccagaaaatcaaataacctcattaaaaatggggt
tcagagctaaacaaagaattctcaactgaggaatactgaatggctgagaa
gcacatgaaaagaatgttcagcatccttaatcatcagggaaatgcaaatc
aaaacaaccctgagattccatctcacaccagtcagaatggctaagatcaa
aaaattcaggtgacagcagattgctggcgtggatgtggagaaagaggaac
actcctccattgttggtggggattgcaggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75356631_75357027
seq2: B6Ng01-164J19.b_48_445

seq1  GAATTCTATATGCTGTAAGCATCAGCTTTTCCTATATTAGTTTATATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATGCTGTAAGCATCAGCTTTTCCTATATTAGTTTATATTTA  50

seq1  CAGTATAGCTCTAGTACAAATTCCAACAGTTTTTAAAATTCTTACATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGCTCTAGTACAAATTCCAACAGTTTTTAAAATTCTTACATTAT  100

seq1  ATTTTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  150

seq1  TAGGGTCATGTATAGAGTATAACTTGAGGGAATTTGTTCCCTCCTTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCATGTATAGAGTATAACTTGAGGGAATTTGTTCCCTCCTTCACC  200

seq1  ATGTGGGTTTTGGGAAATTAAAATCATGTCAGGATTGGTAGCAAGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTTTTGGGAAATTAAAATCATGTCAGGATTGGTAGCAAGCACCT  250

seq1  GCATCTACTGAGCCACCTCTTTGTCCTCTAACCATACATATATTTTTTTA  300
      ||||||||| | || ||||||||| |||||||||||||||||||||||||
seq2  GCATCTACTTATCCTCCTCTTTGTTCTCTAACCATACATATATTTTTTTA  300

seq1  ACTTGACAGGATGATTTTGAAATTCATGTGCAATTAAATAATTAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACAGGATGATTTTGAAATTCATGTGCAATTAAATAATTAAAATAA  350

seq1  GCTAAAACTTTAAACTAAAAAAAAATCA-CATTTTAAAGATGAATAGG  397
       ||||||||||||||||| |||||||||  ||||||||||||||||||
seq2  TCTAAAACTTTAAACTAACAAAAAATCATTATTTTAAAGATGAATAGG  398

seq1: chr10_104054150_104054642
seq2: B6Ng01-164J19.g_264_800 (reverse)

seq1  CAAGCCTGCAAT-CCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACA  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCAATCCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACA  50

seq1  TCCTCGCCAGC-ATCTGCTGTCACCTGAA-TTTTTGATCTTAGCCATTCT  97
      ||| ||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TCCACGCCAGCAATCTGCTGTCACCTGAATTTTTTGATCTTAGCCATTCT  100

seq1  GACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGA  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGA  150

seq1  TGATTAAGGATGTTGAACATT-TTTTCAGGTGCTTCTCTGCCATTCGGTA  196
      |||||||||||| |||||||| |||||| ||||||||| ||||||| |||
seq2  TGATTAAGGATGCTGAACATTCTTTTCATGTGCTTCTCAGCCATTCAGTA  200

seq1  TTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATAG  246
      |||||||| ||||||||||||||| || ||||| ||||| ||||||||  
seq2  TTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGAACCCCA-TTTTTAATGA  249

seq1  GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT---------------  281
      ||||||||||||||||| ||||||||||||  |||               
seq2  GGTTATTTGATTTTCTGGAGTCCACCTTCTATAGTTATATATATATATAT  299

seq1  ---------------------------TCTTTATATATGTTGGATATTAG  304
                                 | | ||||||| |||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATTGGATATTAG  349

seq1  TCCCCTATCTGAATTAGGATAGGTAAAGATCCTTTCTCAATCTGTTGGTG  354
      |||||||||| | ||||||| ||||| ||||||||| |||||||||||||
seq2  TCCCCTATCTTATTTAGGATTGGTAACGATCCTTTCCCAATCTGTTGGTG  399

seq1  GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAAT  404
      | |||||||||||||||| | | ||||||||||| |||||||||||||||
seq2  GCCTTTTTGTCTTATTGAAGATATCTTTTGCCTTACAGAAGCTTTGCAAT  449

seq1  TTTATGAGGTCCCATTTATCAACTCTCTATCTTACAGCACAAGCCATTGC  454
      ||| ||||||||||||| || | |||  |||||||||||||||||||| |
seq2  TTTCTGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTAC  499

seq1  TGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTC  493
      ||||||||||||||| ||||||||||| |||||||||||
seq2  TGTTCTATTCAGGAA-TTTTCCCCTGTGCCCATATCTTC  537