BAC Information

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BAC

Clone NameB6Ng01-165I01
Chromosome10 (Build37)
Map Location 63,687,430 - 63,844,824
singlet/doubletdoublet
Overlap geneCtnna3
Upstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Lrrtm3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165I01.bB6Ng01-165I01.g
ACCDH957544DH957545
length1,0861,065
definitionDH957544|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I01, 5' end.DH957545|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,687,430 - 63,688,515)(63,843,744 - 63,844,824)
sequence
gaattcacttcatgtatagcatgaagggaaaatacgtcggtgtgttccaa
gggataagattgaacagagttgggagacatggcctctgccttcaaaggaa
aggtagatttctggaaaggaatagaactcattgtagtttcagaaattcca
agtgagagctttgtacttggagaaggtagaaaggacattacaacctgaca
attcatgagaggacgcctttgcgaatttacaagtggttaatgttggtaga
gtataaaatagagttagagggaaggcaaaaaagactcaaaaccagagcaa
aattaaaacaagttaatagtaaccctgcctggaaaagacatgaattatat
attgaagcaatatgcaaatgaatataacacacctacaatttaaaatatga
tgatttatattaaatagagagatcctaaatcttatagtttaatatatatc
acacatggtacttgccaaatttgaaggttcatataaatgcaaaagtcttc
ttttcattcatcaatctagttttgagagtcttctatgctagcacatacat
caatcatccaagcctttgagttagtgaaaagtagtgtacttttgaatgaa
gatgctacaagttgtcacagttatattggtacatctttaaattattttta
atttagtggcattaacattaaaataactatgggtaattaaaaatattttg
atacatattaatgtcattatactcatttcactttatatgtattagttgaa
attatcaggttatagatagagatttaatatttaattgataggtttttttg
ttttttgttttttttcttttattggatagtttatttatttacattttaaa
ttttatcccctttcccagtttcccctccagaaatgccatatcccctcccc
cttcctgtggttctatgagagtgctcccctaaccacccatccattccttg
cctcctgctctgacattcccctacactggggcattgagcctttacaggac
caagggtctctccttcccactgatgcctggcaaagccatcctctgctaca
aatttgaactgggagcagggtctctccatggtactc
gaattccaatcccatttttaaaaatgaatatatgaatagcacctaaagag
ctaagtgatattttatgtgatcagtagtggagatcattgacaattaggac
attgcagatcattctagagacatccaagaaattgattggagaaaggcaaa
gatgagttcaggaagccagcaaatgttacataagtatcatttattgggaa
gtgaccagggaaattgctgaaagatggcagggtagttaaaaacctctgtt
cccttctaggcacactgactgcaggttttgcatgtaacacagcaggaaat
atacagattgaaatttcaagagggagtgatttcaaatgccattatgcatt
catatctatattcatgtagctaagtgtttaaaatcaaatgactaggatga
gaatagcctgcaggggcttggggaatatgtagaatctctttaaaagatgc
taaggaagaattgaagggaccactaggatatgcaatagaaaagcatccag
aaaacaaattgatgggaaatggctggccaagaaaatataataccagcaga
ctatggcatatggataccaagaggaaagagtgattaaggaaggagtattc
aaacaacaggtgcagttgtcgcaagagatgcagcagagcacagaacataa
ctctgatcattgtgtatccaggagcagatgcagacacagaggaaccaaga
cagaaaaggctcttaaatgtgtcatgttgggatttctctcactcatcctg
tgtcagtgttcaatttcagcaatggcttgtgcacaagtaaacatttgccc
ttccctagagctgaggaaaccagatgagaaactacagcactgagtgtaca
ggtgaactaggaactggcagtgtgaaaggttcacagtatctatgttctct
ccaccaaactcagtgtctcagatggaggagaaatgctgtccaacatcaag
agtagagagaaatttggtgtttcagactttgtctgacccaagtctcataa
aagccaccctaaagctcaggctcttgggtgcttagcttctgagtacatcc
aatcaactgatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63687430_63688515
seq2: B6Ng01-165I01.b_45_1130

seq1  GAATTCACTTCATGTATAGCATGAAGGGAAAATACGTCGGTGTGTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATGTATAGCATGAAGGGAAAATACGTCGGTGTGTTCCAA  50

seq1  GGGATAAGATTGAACAGAGTTGGGAGACATGGCCTCTGCCTTCAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGATTGAACAGAGTTGGGAGACATGGCCTCTGCCTTCAAAGGAA  100

seq1  AGGTAGATTTCTGGAAAGGAATAGAACTCATTGTAGTTTCAGAAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATTTCTGGAAAGGAATAGAACTCATTGTAGTTTCAGAAATTCCA  150

seq1  AGTGAGAGCTTTGTACTTGGAGAAGGTAGAAAGGACATTACAACCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGCTTTGTACTTGGAGAAGGTAGAAAGGACATTACAACCTGACA  200

seq1  ATTCATGAGAGGACGCCTTTGCGAATTTACAAGTGGTTAATGTTGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAGAGGACGCCTTTGCGAATTTACAAGTGGTTAATGTTGGTAGA  250

seq1  GTATAAAATAGAGTTAGAGGGAAGGCAAAAAAGACTCAAAACCAGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATAGAGTTAGAGGGAAGGCAAAAAAGACTCAAAACCAGAGCAA  300

seq1  AATTAAAACAAGTTAATAGTAACCCTGCCTGGAAAAGACATGAATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACAAGTTAATAGTAACCCTGCCTGGAAAAGACATGAATTATAT  350

seq1  ATTGAAGCAATATGCAAATGAATATAACACACCTACAATTTAAAATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCAATATGCAAATGAATATAACACACCTACAATTTAAAATATGA  400

seq1  TGATTTATATTAAATAGAGAGATCCTAAATCTTATAGTTTAATATATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATATTAAATAGAGAGATCCTAAATCTTATAGTTTAATATATATC  450

seq1  ACACATGGTACTTGCCAAATTTGAAGGTTCATATAAATGCAAAAGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTACTTGCCAAATTTGAAGGTTCATATAAATGCAAAAGTCTTC  500

seq1  TTTTCATTCATCAATCTAGTTTTGAGAGTCTTCTATGCTAGCACATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCATCAATCTAGTTTTGAGAGTCTTCTATGCTAGCACATACAT  550

seq1  CAATCATCCAAGCCTTTGAGTTAGTGAAAAGTAGTGTACTTTTGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCCAAGCCTTTGAGTTAGTGAAAAGTAGTGTACTTTTGAATGAA  600

seq1  GATGCTACAAGTTGTCACAGTTATATTGGTACATCTTTAAATTATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACAAGTTGTCACAGTTATATTGGTACATCTTTAAATTATTTTTA  650

seq1  ATTTAGTGGCATTAACATTAAAATAACTATGGGTAATTAAAAATATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGGCATTAACATTAAAATAACTATGGGTAATTAAAAATATTTTG  700

seq1  ATACATATTAATGTCATTATACTCATTTCACTTTATATGTATTAGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTAATGTCATTATACTCATTTCACTTTATATGTATTAGTTGAA  750

seq1  ATTATCAGGTTATAGATAGAGATTTAATATTTAATTGATAGGTTTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGGTTATAGATAGAGATTTAATATTTAATTGATAGGTTTTTTTG  800

seq1  TTTTTTGTTTTTTTTCTTTTATTGGATAGTTTATTTATTTACATTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTTCTTTTATTGGATAGTTTATTTATTTACATTTTAAA  850

seq1  TTTTATCCCCTTTCCCAGTTTCCCCTCCAGAAATGCCATATCCCCTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCCCTTTCCCAGTTTCCCCTCCAGAAATGCCATATCCCCTCCCC  900

seq1  CTTCCTGTGGTTCTATGAGAGTGCTCCCCTAACCACCCATCCATTCC-TG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCCTGTGGTTCTATGAGAGTGCTCCCCTAACCACCCATCCATTCCTTG  950

seq1  CCTCCCTGCTCTGACATTCCCCTACACTGGGGCATTGAGCCTTTACAGGA  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-CCTGCTCTGACATTCCCCTACACTGGGGCATTGAGCCTTTACAGGA  999

seq1  CCAAGGGTCTCTCC-TCCCACTGATGCCTGGCAAGGCCATCCTCTGCTAC  1048
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CCAAGGGTCTCTCCTTCCCACTGATGCCTGGCAAAGCCATCCTCTGCTAC  1049

seq1  ATATGTG-ACT-GGAGCCGTGGGTCTCTCCATGTGTACTC  1086
      | || || ||| |||||   ||||||||||||| ||||||
seq2  AAATTTGAACTGGGAGC--AGGGTCTCTCCATG-GTACTC  1086

seq1: chr10_63843744_63844824
seq2: B6Ng01-165I01.g_67_1131 (reverse)

seq1  TAAGATCAGTTTGGGATTGGGATGAACTCAGAAGCTAAGCACCCCAGGAG  50
      |||||||||||   |||| ||||| ||||||||||||||||||| ||   
seq2  TAAGATCAGTT---GATT-GGATGTACTCAGAAGCTAAGCACCCAAG--A  44

seq1  GCCTGGAGCCTTAGCGTGGCTTTTACTGAGACTTGGGGTCCAAGACAAAG  100
      |||| |||| |||| |||||||||| |||||||| |||||  ||||||||
seq2  GCCT-GAGCTTTAGGGTGGCTTTTA-TGAGACTT-GGGTC--AGACAAAG  89

seq1  TCTGAAACACATATTTTCCTCTCTACTCCTTGGTGTTGGACAGCATTTCT  150
      ||||||||||  | ||| ||||||||| |||| |||||||||||||||||
seq2  TCTGAAACACCAAATTT-CTCTCTACT-CTTGATGTTGGACAGCATTTCT  137

seq1  CCTCCATCCTGAGACACCTGAGTTTGGTGGAGAGAACATAGATACTGTGA  200
      ||||||| |||||||| |||||||||||||||||||||||||||||||| 
seq2  CCTCCAT-CTGAGACA-CTGAGTTTGGTGGAGAGAACATAGATACTGTG-  184

seq1  AACCTTTCACACTGCCAGTTCCTAGTTCACCTGTACACTCAGTGCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCACACTGCCAGTTCCTAGTTCACCTGTACACTCAGTGCTGTAG  234

seq1  TTTCTCATCTGGTTTCCTCAGCTCTAGGGAAGGGCAAATGTTTACTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTGGTTTCCTCAGCTCTAGGGAAGGGCAAATGTTTACTTGTG  284

seq1  CACAAGCCATTGCTGAAATTGAACACTGACACAGGATGAGTGAGAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCATTGCTGAAATTGAACACTGACACAGGATGAGTGAGAGAAAT  334

seq1  CCCAACATGACACATTTAAGAGCCTTTTCTGTCTTGGTTCCTCTGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATGACACATTTAAGAGCCTTTTCTGTCTTGGTTCCTCTGTGTCT  384

seq1  GCATCTGCTCCTGGATACACAATGATCAGAGTTATGTTCTGTGCTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTCCTGGATACACAATGATCAGAGTTATGTTCTGTGCTCTGCT  434

seq1  GCATCTCTTGCGACAACTGCACCTGTTGTTTGAATACTCCTTCCTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTTGCGACAACTGCACCTGTTGTTTGAATACTCCTTCCTTAATC  484

seq1  ACTCTTTCCTCTTGGTATCCATATGCCATAGTCTGCTGGTATTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCTCTTGGTATCCATATGCCATAGTCTGCTGGTATTATATTTT  534

seq1  CTTGGCCAGCCATTTCCCATCAATTTGTTTTCTGGATGCTTTTCTATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCAGCCATTTCCCATCAATTTGTTTTCTGGATGCTTTTCTATTGC  584

seq1  ATATCCTAGTGGTCCCTTCAATTCTTCCTTAGCATCTTTTAAAGAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTAGTGGTCCCTTCAATTCTTCCTTAGCATCTTTTAAAGAGATTC  634

seq1  TACATATTCCCCAAGCCCCTGCAGGCTATTCTCATCCTAGTCATTTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTCCCCAAGCCCCTGCAGGCTATTCTCATCCTAGTCATTTGATT  684

seq1  TTAAACACTTAGCTACATGAATATAGATATGAATGCATAATGGCATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACTTAGCTACATGAATATAGATATGAATGCATAATGGCATTTGA  734

seq1  AATCACTCCCTCTTGAAATTTCAATCTGTATATTTCCTGCTGTGTTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCCCTCTTGAAATTTCAATCTGTATATTTCCTGCTGTGTTACAT  784

seq1  GCAAAACCTGCAGTCAGTGTGCCTAGAAGGGAACAGAGGTTTTTAACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCTGCAGTCAGTGTGCCTAGAAGGGAACAGAGGTTTTTAACTAC  834

seq1  CCTGCCATCTTTCAGCAATTTCCCTGGTCACTTCCCAATAAATGATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATCTTTCAGCAATTTCCCTGGTCACTTCCCAATAAATGATACTT  884

seq1  ATGTAACATTTGCTGGCTTCCTGAACTCATCTTTGCCTTTCTCCAATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACATTTGCTGGCTTCCTGAACTCATCTTTGCCTTTCTCCAATCAA  934

seq1  TTTCTTGGATGTCTCTAGAATGATCTGCAATGTCCTAATTGTCAATGATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGATGTCTCTAGAATGATCTGCAATGTCCTAATTGTCAATGATC  984

seq1  TCCACTACTGATCACATAAAATATCACTTAGCTCTTTAGGTGCTATTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTACTGATCACATAAAATATCACTTAGCTCTTTAGGTGCTATTCAT  1034

seq1  ATATTCATTTTTAAAAATGGGATTGGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  ATATTCATTTTTAAAAATGGGATTGGAATTC  1065