BAC Information

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BAC

Clone NameB6Ng01-165O01
Chromosome10 (Build37)
Map Location 21,413,800 - 21,578,046
singlet/doubletdoublet
Overlap geneLOC100039936, LOC628133
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O01.bB6Ng01-165O01.g
ACCDH957816DH957817
length1,240992
definitionDH957816|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O01, 5' end.DH957817|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,576,801 - 21,578,046)(21,413,800 - 21,414,786)
sequence
gaattcactgggcctggtctccggagagcttcctgccaatgaaaactgct
ccaatcaagatggaaacagtaatgttaaactcaaaagaaacgtccacacc
attgagctgcacaccagattggaggcattatttcaaacagattgcaggta
ggcactctgcacagggtaagaaaagttgatacttcatagctgtgcagcgt
gttgtcccagagcaagcactaaagttatagtgcacaggctgtgggcagtg
tgccgggtttatgcaaggctatgtccagaaccaacaggcctcacactgtg
ccaaaggcccgggacaagctcagtggtgtcagagcttctggtccctgggg
actgcagcggagcctggaaggggctgagcatcctgccgctgtcccaagct
ggtggtgcctgccctgccctttcctggctgggtgcagacgtgctggcctc
tgtgcgctcagggcaggcgccagggcggagcacgagaggacttcttggat
gcctcctccctcagaaacaaattccagtgcctgactgcagattgcatgaa
tcctcacaaagtactgtacctattcagccttaggaaaaagttcttgtttg
atatcagaagctaaggggggtcaggcctgatacttagatggggaaatggt
tgagaactctgggagcaaaagatgcatacaaggcctgcaatgctttcctt
tctggctagtagccagatgctcaggtgtgtgctatcaggagggttgtctg
tggtaatagccctgaaaaggagacactgggatacttctttccccacccca
cccccaaactgtgtgaattattgactgcactgaaaggcaaatgatgtatg
gcaaaatcattttttaaagttagaatttgataggaaacccgttatcgaca
ggctgtttaaaaggtgccttctagtattcaagcagaggataggttcctca
aagatgattacaatctttagtatatttgagcaaagacttgttgactagcc
aaagcaccatgctcatcctgaagtgggcataaaatgcttgtgaaagggtc
tgccttgtccctcaaataaccttgagatgattccagtcaaggctggtaga
agcagcaaacaattgctcctcaaaagaaataatgttagccagccattcat
tgcgtcaccataagtaatccaagggccagcctgggctctctatggaaccc
tcatccacacaaattcaaccttaaatactgaagggaagag
gaattccttattttggctttaaataatacttctattgttttatcagcaat
gcttgtaggaggaaggcattcatatatgcatacgttttgtgtaagtgttc
acatatgtgtgtaagtgttcacatatgtgtatatgtgcacaggaagacca
ggcatcaatgttcagcaccttcctctactgatctccaccttacgccttga
ggcagggtttcatcctgagcccagaactcacttatttcacaggaagagga
gcctgcaggctctggggttctcgggctgctacatccccaacactaggacc
acaagtgtgtctcacaaggtctctcttttcacatttgcatttgaacgcat
gttcctatcttgtcctggcaagctctttaccaattgggccttccctccct
gcatgtatcccccagccccctcccaccccaccccacccccaccagcaatg
gcagcatgcctttgggagctcactggagatgcactgttgaatggccaact
acaggcttgcagggaaagttgacataacgagtctagcagagaggatttga
ggccagaagggttgatgtgaaaatgatggagagacactgtgggttcttaa
ttccgagcctgtatggtagttggttttctgttgctgtgacaagaaaccca
aggaaaacaagttaaacaaggaaacatctttcagtctcctgctttcagag
atcctactatgtgttaactcagctccatcgcttccaggcaatgaagaatt
cagaatgaataaacctgagaaaaggaggcatccctcaataatccacaccc
cccccccaacccaacccctgccaagctgggccccaactaagtttctgcca
ctcttctcatagtccctcaaatgattaaacctatctgttgatcaactgag
ataagttcagagcccttcagacccagtcattccctaagccctgttgaacc
cgggggcaggaggccttttggaatgcctttctgagcaaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21576801_21578046
seq2: B6Ng01-165O01.b_48_1287 (reverse)

seq1  CTCTTCCCTTCAGTATATTTATAGTTTGATTTTGTTGTTGTTTGAAATGG  50
      |||||||||||||  |||||| || |||| |||||   ||  |||   ||
seq2  CTCTTCCCTTCAG--TATTTA-AGGTTGAATTTGT--GTGGATGA---GG  42

seq1  GTTTCACTATGGAGCCCAGGCTGGCCTTGGGATGACTTAT-GTGA-GCCA  98
      ||| || ||  ||||||||||||||| | |||| |||||| |||| || |
seq2  GTTCCA-TAGAGAGCCCAGGCTGGCCCTTGGATTACTTATGGTGACGCAA  91

seq1  TG-ATAGCTGGCTAACATTTATTC-TTTGA-GAGCATTTGTTTGCTGCCT  145
      || || |||||||||||||  ||| ||||| ||||| |||||||||| ||
seq2  TGAATGGCTGGCTAACATTATTTCTTTTGAGGAGCAATTGTTTGCTG-CT  140

seq1  TCTACCAGCCTGACCTGGAATCACTTCAGGGATACTCTGA-GGACAAGCC  194
      |||||||||||   |||||||||  ||| || || | ||| ||||||| |
seq2  TCTACCAGCCTTGACTGGAATCATCTCAAGGTTA-TTTGAGGGACAAGGC  189

seq1  AGACCCCTTCACAAGCA-TCTATGCCCACTTCAGGATGAGCATGGTGCTT  243
      |||||| |||||||||| | ||||||||||||||||||||||||||||||
seq2  AGACCCTTTCACAAGCATTTTATGCCCACTTCAGGATGAGCATGGTGCTT  239

seq1  TGGCTAGTCAACAAGTCTTTGCTCAAATATACTAAAGATTGTAATCATCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGCTAGTCAACAAGTCTTTGCTCAAATATACTAAAGATTGTAATCATC-  288

seq1  TTTGAGGAACCTATCCTCTGCTTGAATACTAGAAGGCACCTTTTAAACAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAACCTATCCTCTGCTTGAATACTAGAAGGCACCTTTTAAACAG  338

seq1  CCTGTCGATAACGGGTTTCCTATCAAATTCTAACTTTAAAAAATGATTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGATAACGGGTTTCCTATCAAATTCTAACTTTAAAAAATGATTTT  388

seq1  GCCATACATCATTTGCCTTTCAGTGCAGTCAATAAATTCACACAGTTTGG  443
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCATACATCATTTGCCTTTCAGTGCAGTCAAT-AATTCACACAGTTTGG  437

seq1  GGGTGGGGTGGGGAAAGAAGTATCCCAGTGTCTCCTTTTCAGGGCTATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTGGGGAAAGAAGTATCCCAGTGTCTCCTTTTCAGGGCTATTA  487

seq1  CCACAGACAACCCTCCTGATAGCACACACCTGAGCATCTGGCTACTAGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACAACCCTCCTGATAGCACACACCTGAGCATCTGGCTACTAGCC  537

seq1  AGAAAGGAAAGCATTGCAGGCCTTGTATGCATCTTTTGCTCCCAGAGTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAGCATTGCAGGCCTTGTATGCATCTTTTGCTCCCAGAGTTC  587

seq1  TCAACCATTTCCCCATCTAAGTATCAGGCCTGACCCCCCTTAGCTTCTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATTTCCCCATCTAAGTATCAGGCCTGACCCCCCTTAGCTTCTGA  637

seq1  TATCAAACAAGAACTTTTTCCTAAGGCTGAATAGGTACAGTACTTTGTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACAAGAACTTTTTCCTAAGGCTGAATAGGTACAGTACTTTGTGA  687

seq1  GGATTCATGCAATCTGCAGTCAGGCACTGGAATTTGTTTCTGAGGGAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATGCAATCTGCAGTCAGGCACTGGAATTTGTTTCTGAGGGAGGA  737

seq1  GGCATCCAAGAAGTCCTCTCGTGCTCCGCCCTGGCGCCTGCCCTGAGCGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAAGAAGTCCTCTCGTGCTCCGCCCTGGCGCCTGCCCTGAGCGC  787

seq1  ACAGAGGCCAGCACGTCTGCACCCAGCCAGGAAAGGGCAGGGCAGGCACC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCCAGCACGTCTGCACCCAGCCAGGAAAGGGCAGGGCAGGCACC  837

seq1  ACCAGCTTGGGACAGCGGCAGGATGCTCAGCCCCTTCCAGGCTCCGCTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTGGGACAGCGGCAGGATGCTCAGCCCCTTCCAGGCTCCGCTGC  887

seq1  AGTCCCCAGGGACCAGAAGCTCTGACACCACTGAGCTTGTCCCGGGCCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAGGGACCAGAAGCTCTGACACCACTGAGCTTGTCCCGGGCCTT  937

seq1  TGGCACAGTGTGAGGCCTGTTGGTTCTGGACATAGCCTTGCATAAACCCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGTGTGAGGCCTGTTGGTTCTGGACATAGCCTTGCATAAACCCG  987

seq1  GCACACTGCCCACAGCCTGTGCACTATAACTTTAGTGCTTGCTCTGGGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCCCACAGCCTGTGCACTATAACTTTAGTGCTTGCTCTGGGAC  1037

seq1  AACACGCTGCACAGCTATGAAGTATCAACTTTTCTTACCCTGTGCAGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGCTGCACAGCTATGAAGTATCAACTTTTCTTACCCTGTGCAGAGT  1087

seq1  GCCTACCTGCAATCTGTTTGAAATAATGCCTCCAATCTGGTGTGCAGCTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTGCAATCTGTTTGAAATAATGCCTCCAATCTGGTGTGCAGCTC  1137

seq1  AATGGTGTGGACGTTTCTTTTGAGTTTAACATTACTGTTTCCATCTTGAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTGGACGTTTCTTTTGAGTTTAACATTACTGTTTCCATCTTGAT  1187

seq1  TGGAGCAGTTTTCATTGGCAGGAAGCTCTCCGGAGACCAGGCCCAGTGAA  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGTTTTCATTGGCAGGAAGCTCTCCGGAGACCAGGCCCAGTGAA  1237

seq1  TTC  1246
      |||
seq2  TTC  1240

seq1: chr10_21413800_21414786
seq2: B6Ng01-165O01.g_69_1059

seq1  GAATTCCTTATTTTGGCTTTAAATAATACTTCTATTGTTTTATCAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTTGGCTTTAAATAATACTTCTATTGTTTTATCAGCAAT  50

seq1  GCTTGTAGGAGGAAGGCATTCATATATGCATACGTTTTGTGTAAGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGGAGGAAGGCATTCATATATGCATACGTTTTGTGTAAGTGTTC  100

seq1  ACATATGTGTGTAAGTGTTCACATATGTGTATATGTGCACAGGAAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTGTAAGTGTTCACATATGTGTATATGTGCACAGGAAGACCA  150

seq1  GGCATCAATGTTCAGCACCTTCCTCTACTGATCTCCACCTTACGCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAATGTTCAGCACCTTCCTCTACTGATCTCCACCTTACGCCTTGA  200

seq1  GGCAGGGTTTCATCCTGAGCCCAGAACTCACTTATTTCACAGGAAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTTTCATCCTGAGCCCAGAACTCACTTATTTCACAGGAAGAGGA  250

seq1  GCCTGCAGGCTCTGGGGTTCTCGGGCTGCTACATCCCCAACACTAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGGCTCTGGGGTTCTCGGGCTGCTACATCCCCAACACTAGGACC  300

seq1  ACAAGTGTGTCTCACAAGGTCTCTCTTTTCACATTTGCATTTGAACGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGTCTCACAAGGTCTCTCTTTTCACATTTGCATTTGAACGCAT  350

seq1  GTTCCTATCTTGTCCTGGCAAGCTCTTTACCAATTGGGCCTTCCCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATCTTGTCCTGGCAAGCTCTTTACCAATTGGGCCTTCCCTCCCT  400

seq1  GCATGTATCCCCCAGCCCCCTCCCACCCCACCCCACCCCCACCAGCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATCCCCCAGCCCCCTCCCACCCCACCCCACCCCCACCAGCAATG  450

seq1  GCAGCATGCCTTTGGGAGCTCACTGGAGATGCACTGTTGAATGGCCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGCCTTTGGGAGCTCACTGGAGATGCACTGTTGAATGGCCAACT  500

seq1  ACAGGCTTGCAGGGAAAGTTGACATAACGAGTCTAGCAGAGAGGATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTGCAGGGAAAGTTGACATAACGAGTCTAGCAGAGAGGATTTGA  550

seq1  GGCCAGAAGGGTTGATGTGAAAATGATGGAGAGACACTGTGGGTTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGGGTTGATGTGAAAATGATGGAGAGACACTGTGGGTTCTTAA  600

seq1  TTCCGAGCCTGTATGGTAGTTGGTTTTCTGTTGCTGTGACAAGAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGCCTGTATGGTAGTTGGTTTTCTGTTGCTGTGACAAGAAACCCA  650

seq1  AGGAAAACAAGTTAAACAAGGAAACATCTTTCAGTCTCCTGCTTTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAAGTTAAACAAGGAAACATCTTTCAGTCTCCTGCTTTCAGAG  700

seq1  ATCCTACTATGTGTTAACTCAGCTCCATCGCTTCCAGGCAATGAAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTATGTGTTAACTCAGCTCCATCGCTTCCAGGCAATGAAGAATT  750

seq1  CAGAATGAATAAACCTGAGAAAAGGAGGCATCCCTCAATAATCCACACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAATAAACCTGAGAAAAGGAGGCATCCCTCAATAATCCACACCC  800

seq1  CCCCCCCAACCCAACCCCTGCCAAGCTGGGCCCCAACTAAGTTTCTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAACCCAACCCCTGCCAAGCTGGGCCCCAACTAAGTTTCTGCCA  850

seq1  CTC-TCTCATAGTCCCTCAAATGA-TAAACCTATCTGTTGATCAACTGAG  898
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCTTCTCATAGTCCCTCAAATGATTAAACCTATCTGTTGATCAACTGAG  900

seq1  ATAAG-TCAGAGCCC-TCAGAACCCAGTCATTTCCCTAAGCCCTG-TGAA  945
      ||||| ||||||||| |||| ||||||||| |||||||||||||| ||||
seq2  ATAAGTTCAGAGCCCTTCAG-ACCCAGTCA-TTCCCTAAGCCCTGTTGAA  948

seq1  CCCTGGTGCAGGA-GCCTTTTGG-ATGCATTTCTGAGCTAAACC  987
      ||| || |||||| ||||||||| |||| ||||||||| |||||
seq2  CCCGGGGGCAGGAGGCCTTTTGGAATGCCTTTCTGAGC-AAACC  991