BAC Information

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BAC

Clone NameB6Ng01-166A02
Chromosome10 (Build37)
Map Location 45,269,498 - 45,428,870
singlet/doubletdoublet
Overlap geneLOC100042364, Hace1
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
Downstream geneLOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A02.bB6Ng01-166A02.g
ACCDH957907DH957908
length878886
definitionDH957907|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A02, 5' end.DH957908|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,428,321 - 45,428,870)(45,269,498 - 45,270,381)
sequence
gaattctttgctgtggaagtgtaatcaaaaaccttttccccctcctagtt
atataaggtcatggtgatttgtcacagcaataaaaaccctaagacaactg
tgtgcctctctattaaagtaggattcttgaacatgtcctattttacgttt
gtaacactgggatgtctatccttgggattagcaaaaccacttgacaacta
cagctgttaaatgtttgttgaataaatagacagtggttgttacagtgggg
ataccctccataaactcatgtgtttgaatacttggcccctgtatggtccc
tgttttggagggttgtaaaacctttaggacagtggttctcaacctgtggg
tcaacatccttttggggggggggggtcaaatgaccttttaacaggggtca
cctaagaccactggaaaacatagatatttacattatgattcataatagta
gcaaaattacagttatgaagtagcagcaatgaaaattgtgtatttagggg
tcactacaatatgagggactgtattaaagggttgcagcattaaggaaggt
tgagaacctctgttaggaggtggagcctcactgagtatgtcaatgagggt
cagtcatgatggttataacctggccttccttcctgctcctgttcaagtaa
tgcctgtgtgctgccatgcacaccatgatggatgtcatctgccctggaac
tgtgagacactatacagcctttctccttgtgtgtttgtaatccaatcatt
tcgttctttgtgaaaatttcttggcagaaacccttttttctctattttgt
tcttcagtgagaaaacaacaatgagcagtatttacccgtatctttcgggg
atttggagatagaaacatttcggctgtg
gaattctaggccagccaaggttctaggccaaagatcatacagtgagatct
tctttttaaaaataagaaaacagctaggtgtggtggtgcatgcctttaat
ccaccacccaggatgcagggacaagtggatctcgatgagtttgagtacag
cctgatctacaaatcaagttctaggagagccaggactacacagtgagacc
tggtcttgaaacaaatcatagcaaaacaagacaactggggtgatggtagg
ggagatgggtcaacagttaaaacacttgctgctcttacagaggacctggg
tttggttctgagaaaccacatggtggatcacaataatttgtaaatccagt
tccaggggacctaacagcatattctgacctctactggtaccaggcataca
ccgtggcacacaaacacacatgcaagcaaaataccataaacataaaattt
aagttttttgtttgctttttgaaacaaggtttttctgtgtagtcttagct
ctcctggaactttctctgtagaccagacgggccttgaactcatagagatc
catctgcctctacctccaaagtgctgggattaaaggtgcatatcacttta
aattaattttttaaaaacaaacaaacaagaaaacaaacctggtttagttt
gatttctaatgaacactaaccaaaaaacaacttgaggaggaaaagatagg
tttggcttatgtgtttctgctcgtaatccatcatatccatcatcaaaggc
agccataggcaggaactgaatcagagactgtggaggggagctgataatat
ttgttctatgtgctgggcaattttaaatcaacttgatacaaactaaagtc
tcctaagaggaatgaactttaattgaggaaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_45428321_45428870
seq2: B6Ng01-166A02.b_371_920 (reverse)

seq1  CACAGACGAAATGTTTGCTATTCTCCATAT-CCCGAAAGATACGGGTAAA  49
      ||||| |||||||||| ||| |||||| || |||||||||||||||||||
seq2  CACAGCCGAAATGTTT-CTA-TCTCCAAATCCCCGAAAGATACGGGTAAA  48

seq1  TACTGCTCATTGTTGTTTTCTCACTGAAGAACAAAATAGAGAAAAAAGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCATTGTTGTTTTCTCACTGAAGAACAAAATAGAGAAAAAAGGG  98

seq1  TTTCTGCCAAGAAATTTTCACAAAGAACGAAATGATTGGATTAC-AACAC  148
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTGCCAAGAAATTTTCACAAAGAACGAAATGATTGGATTACAAACAC  148

seq1  ACAAGGAGAAAGGCTGTATAGTGTCTCACAGTTCCAGGGCAGATGACATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGAAAGGCTGTATAGTGTCTCACAGTTCCAGGGCAGATGACATC  198

seq1  CATCATGGTGTGCATGGCAGCACACAGGCATTACTTGAACAGGAGCAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGTGTGCATGGCAGCACACAGGCATTACTTGAACAGGAGCAGGA  248

seq1  AGGAAGGCCAGGTTATAACCATCATGACTGACCCTCATTGACATACTCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCCAGGTTATAACCATCATGACTGACCCTCATTGACATACTCAG  298

seq1  TGAGGCTCCACCTCCTAACAGAGGTTCTCAACCTTCCTTAATGCTGCAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCCACCTCCTAACAGAGGTTCTCAACCTTCCTTAATGCTGCAAC  348

seq1  CCTTTAATACAGTCCCTCATATTGTAGTGACCCCTAAATACACAATTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATACAGTCCCTCATATTGTAGTGACCCCTAAATACACAATTTTC  398

seq1  ATTGCTGCTACTTCATAACTGTAATTTTGCTACTATTATGAATCATAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCTACTTCATAACTGTAATTTTGCTACTATTATGAATCATAATG  448

seq1  TAAATATCTATGTTTTCCAGTGGTCTTAGGTGACCCCTGTTAAAAGGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTATGTTTTCCAGTGGTCTTAGGTGACCCCTGTTAAAAGGTCA  498

seq1  TTTGACCCCCCCCCCCCAAAAGGATGTTGACCCACAGGTTGAGAACCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCCCCCCCCCCCAAAAGGATGTTGACCCACAGGTTGAGAACCACT  548

seq1  GT  550
      ||
seq2  GT  550

seq1: chr10_45269498_45270381
seq2: B6Ng01-166A02.g_65_950

seq1  GAATTCTAGGCCAGCCAAGGTTCTAGGCCAAAGATCATACAGTGAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCCAAGGTTCTAGGCCAAAGATCATACAGTGAGATCT  50

seq1  TCTTTTTAAAAATAAGAAAACAGCTAGGTGTGGTGGTGCATGCCTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAAAATAAGAAAACAGCTAGGTGTGGTGGTGCATGCCTTTAAT  100

seq1  CCACCACCCAGGATGCAGGGACAAGTGGATCTCGATGAGTTTGAGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCAGGATGCAGGGACAAGTGGATCTCGATGAGTTTGAGTACAG  150

seq1  CCTGATCTACAAATCAAGTTCTAGGAGAGCCAGGACTACACAGTGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTACAAATCAAGTTCTAGGAGAGCCAGGACTACACAGTGAGACC  200

seq1  TGGTCTTGAAACAAATCATAGCAAAACAAGACAACTGGGGTGATGGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGAAACAAATCATAGCAAAACAAGACAACTGGGGTGATGGTAGG  250

seq1  GGAGATGGGTCAACAGTTAAAACACTTGCTGCTCTTACAGAGGACCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGTCAACAGTTAAAACACTTGCTGCTCTTACAGAGGACCTGGG  300

seq1  TTTGGTTCTGAGAAACCACATGGTGGATCACAATAATTTGTAAATCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTGAGAAACCACATGGTGGATCACAATAATTTGTAAATCCAGT  350

seq1  TCCAGGGGACCTAACAGCATATTCTGACCTCTACTGGTACCAGGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGACCTAACAGCATATTCTGACCTCTACTGGTACCAGGCATACA  400

seq1  CCGTGGCACACAAACACACATGCAAGCAAAATACCATAAACATAAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGCACACAAACACACATGCAAGCAAAATACCATAAACATAAAATTT  450

seq1  AAGTTTTTTGTTTGCTTTTTGAAACAAGGTTTTTCTGTGTAGTCTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTGTTTGCTTTTTGAAACAAGGTTTTTCTGTGTAGTCTTAGCT  500

seq1  CTCCTGGAACTTTCTCTGTAGACCAGACGGGCCTTGAACTCATAGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACTTTCTCTGTAGACCAGACGGGCCTTGAACTCATAGAGATC  550

seq1  CATCTGCCTCTACCTCCAAAGTGCTGGGATTAAAGGTGCATATCACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTCTACCTCCAAAGTGCTGGGATTAAAGGTGCATATCACTTTA  600

seq1  AATTAATTTTTTAAAAACAAACAAACAAGAAAACAAACCTGGTTTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTTTAAAAACAAACAAACAAGAAAACAAACCTGGTTTAGTTT  650

seq1  GATTTCTAATGAACACTAACC-AAAAACAACTTGAGGAGGAAAAGATAGG  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATTTCTAATGAACACTAACCAAAAAACAACTTGAGGAGGAAAAGATAGG  700

seq1  TTTGGCTTATGTG-TTCTGCTCGTAATCCATCATATCCATCATCAAAGGC  748
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTATGTGTTTCTGCTCGTAATCCATCATATCCATCATCAAAGGC  750

seq1  AG-CAAAGGCAGGAACTGAATCAGAGACTGTGGAGGGGTGCTGATTAATA  797
      || || |||||||||||||||||||||||||||||||| ||||| |||||
seq2  AGCCATAGGCAGGAACTGAATCAGAGACTGTGGAGGGGAGCTGA-TAATA  799

seq1  TTTGTTCTATGTGCTGGCTAATTTTATATCAACTTGATACAAACTAAAGT  847
      |||||||||||||||||  ||||||| |||||||||||||||||||||||
seq2  TTTGTTCTATGTGCTGGGCAATTTTAAATCAACTTGATACAAACTAAAGT  849

seq1  CATCTGAGAGGAAGGAACTTCAATTGAGAAAATGTAT  884
      |  || ||||||| |||||| ||||||| ||||||||
seq2  CTCCTAAGAGGAATGAACTTTAATTGAGGAAATGTAT  886