BAC Information

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BAC

Clone NameB6Ng01-166G08
Chromosome10 (Build37)
Map Location 115,216,849 - 115,332,265
singlet/doubletdoublet
Overlap geneTspan8
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073
Downstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166G08.bB6Ng01-166G08.g
ACCDH958191DH958192
length1,078973
definitionDH958191|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G08, 5' end.DH958192|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,216,849 - 115,218,028)(115,331,631 - 115,332,265)
sequence
gaattcatatttttaggttttaattttccatagaaaatggtcccaggtag
gaaacaaatagcacacccgtaattcatcagcggatggaagaatgctctag
tgaacacagacactctaagcgctttgggcagggagcaacacttacgctgc
agccccttcagtgccaaaggttgtacgtcatttgtccatggtcagtgttg
tgcttggtgcataaatacggcacagcagcatttacagggctttctctcca
tttgtgtaactggtctttatggcaatgcatttgggtttaagtgttttcta
gttggtgtcaacctggctgaagccataccatttaaaggcatgcttcccct
tacccccttattaaaaattaatcccgggatactgaggaatttgagcacac
ccacacagtcccttacctagtcttctttataaccagtaacaattagtttt
gggatagccagagtctgtgtctttggcaaggcgtgtgagaacaagctgac
ctgtgtaggctcggaggtgttgcctcattgaccctgaaaggtcactgccc
tttctccttccgggatggcctagaagtgacccactttagagcccaggatg
ttgtagctgaagctactctttaactagctgagtcattcactgagtcactg
tcccttatcaccgggatgttctgcacctgctgagcacacaggaaagaatg
tgcagggcatcctggaggggactttccagtgcgcccacacctgtgcactc
acacacacgcactcacacacgcactcatacacaccaatacacacatccat
acacatgcatacacgcacacacacatgcacatacatacacatccatacac
atacacacacacacacacacacacacacacgcgcactcatacacaccaat
acacacatccatacacacacacacatgcacatacatacacagccatacac
atacacacacacacacacacacacatgcacatcatacacatccatacaca
tacacacacacacacacacacgcactcatacccaccaatacacacatcca
taccacccaacacatgccatacatacac
gaattcctgacggtggacaccagagctccttgagatacttttctttattt
agtccaattcaaaatgaaggaatcaacatgcttatatcagagtcaatttt
ttcaggaaagcctcaaagtaagacagagatgccctatgaaatggcatcct
gggacctggatctgttgtgtagcaatgctgaaacattccatgctgcagga
gaactctttaatgcagggaaacttaaacaattcaaatagctacaggaagt
tcccaaaactgatgaggttcaccagtgccctcccacacaagactatataa
gcagtgaagactgctgagagtcagtttaaaacaaggttagctgacctaaa
gaaatagagaccagttaactgcctccagcctattgagctccctggaggtg
tacagtgttccaggttcccagatgttgtgagctgtcatccatgcaggggt
gatctttgctgatgcagctgtcctttgagtcatttctgcttctgtaagta
acccctcacccatacttctgtaaggaacaccaataaaactcattggttct
ctgagttggactttggtggtattcatcctttggtctgcatcagctcccta
tctgaggtgaatagatgttggtacatgtctcctcaggaatagtgtctcat
aacgaggctgttctgtgtttccattaatctcacaaagacaggaaaactaa
aacaaaatctaagtacagtcgatttcacccacctcatagtagatgagtag
ctgtacctaaactgcagacagggtcagctgcccctcacctggtctctggg
ctgcatttgcccgagtctcactgaagtttctaacctgctggggatgacag
caggatttgatagtgcttggtttttataagcatggtgtctaaagctaagc
cacttatctcatctgagctcatcctatgaaacgctgacccaaccttcacc
catgtaaacaaagaacccattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115216849_115218028
seq2: B6Ng01-166G08.b_46_1123

seq1  GAATTCATATTTTTAGGTTTTAATTTTCCATAGAAAATGGTCCCAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTTTAGGTTTTAATTTTCCATAGAAAATGGTCCCAGGTAG  50

seq1  GAAACAAATAGCACACCCGTAATTCATCAGCGGATGGAAGAATGCTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATAGCACACCCGTAATTCATCAGCGGATGGAAGAATGCTCTAG  100

seq1  TGAACACAGACACTCTAAGCGCTTTGGGCAGGGAGCAACACTTACGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGACACTCTAAGCGCTTTGGGCAGGGAGCAACACTTACGCTGC  150

seq1  AGCCCCTTCAGTGCCAAAGGTTGTACGTCATTTGTCCATGGTCAGTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTCAGTGCCAAAGGTTGTACGTCATTTGTCCATGGTCAGTGTTG  200

seq1  TGCTTGGTGCATAAATACGGCACAGCAGCATTTACAGGGCTTTCTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTGCATAAATACGGCACAGCAGCATTTACAGGGCTTTCTCTCCA  250

seq1  TTTGTGTAACTGGTCTTTATGGCAATGCATTTGGGTTTAAGTGTTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAACTGGTCTTTATGGCAATGCATTTGGGTTTAAGTGTTTTCTA  300

seq1  GTTGGTGTCAACCTGGCTGAAGCCATACCATTTAAAGGCATGCTTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTCAACCTGGCTGAAGCCATACCATTTAAAGGCATGCTTCCCCT  350

seq1  TACCCCCTTATTAAAAATTAATCCCGGGATACTGAGGAATTTGAGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTTATTAAAAATTAATCCCGGGATACTGAGGAATTTGAGCACAC  400

seq1  CCACACAGTCCCTTACCTAGTCTTCTTTATAACCAGTAACAATTAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTCCCTTACCTAGTCTTCTTTATAACCAGTAACAATTAGTTTT  450

seq1  GGGATAGCCAGAGTCTGTGTCTTTGGCAAGGCGTGTGAGAACAAGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCCAGAGTCTGTGTCTTTGGCAAGGCGTGTGAGAACAAGCTGAC  500

seq1  CTGTGTAGGCTCGGAGGTGTTGCCTCATTGACCCTGAAAGGTCACTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGGCTCGGAGGTGTTGCCTCATTGACCCTGAAAGGTCACTGCCC  550

seq1  TTTCTCCTTCCGGGATGGCCTAGAAGTGACCCACTTTAGAGCCCAGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTCCGGGATGGCCTAGAAGTGACCCACTTTAGAGCCCAGGATG  600

seq1  TTGTAGCTGAAGCTACTCTTTAACTAGCTGAGTCATTCACTGAGTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTGAAGCTACTCTTTAACTAGCTGAGTCATTCACTGAGTCACTG  650

seq1  TCCCTTATCACCGGGATGTTCTGCACCTGCTGAGCACACAGGAAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATCACCGGGATGTTCTGCACCTGCTGAGCACACAGGAAAGAATG  700

seq1  TGCAGGGCATCCTGGAGGGGACTTTCCAGTGCGCCCACACCTGTGCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCATCCTGGAGGGGACTTTCCAGTGCGCCCACACCTGTGCACTC  750

seq1  ACACACACGCACTCACACACGCACTCATACACACCAATACACACATCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCACTCACACACGCACTCATACACACCAATACACACATCCAT  800

seq1  ACACATGCATACACGCACACACACATGCACATACATACACATCCATACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATACACGCACACACACATGCACATACATACACATCCATACAC  850

seq1  ATACACACACACACACACACACACACACACGCGCACTCATACACACCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACGCGCACTCATACACACCAAT  900

seq1  ACACACATCCATACACACACACACATGCACATACATACACAGACATACAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACATCCATACACACACACACATGCACATACATACACAGCCATACAC  950

seq1  ATACACACACACACACACACACATCCATACACATGCATACACACACATAC  1000
      ||||||||||||                                    ||
seq2  ATACACACACAC------------------------------------AC  964

seq1  ACACACACACATGCATATACATACACACTCATACACACATACACATCCAT  1050
      ||||||||||||||| ||                   |||||||||||||
seq2  ACACACACACATGCACAT-------------------CATACACATCCAT  995

seq1  ACACATACACACACACACACACACACACACACACACACACTCATGCACAT  1100
      |||||||||||||||||||||||||| |||                    
seq2  ACACATACACACACACACACACACACGCAC--------------------  1025

seq1  ACATACACACTCATACACACATACACATCCATACACACCCATACACACAT  1150
       ||||| |||  ||||      |||||||||||| ||||||   ||||||
seq2  TCATACCCACCAATAC------ACACATCCATAC-CACCCA---ACACAT  1065

seq1  -CCATACACACACACATGCACATACATACAC  1180
       ||||||| ||||                  
seq2  GCCATACATACAC------------------  1078

seq1: chr10_115331631_115332265
seq2: B6Ng01-166G08.g_67_701 (reverse)

seq1  TGAGGAGACATGTACCAACATCTATTCACCTCAGATAGGGAGCTGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACATGTACCAACATCTATTCACCTCAGATAGGGAGCTGATGCA  50

seq1  GACCAAAGGATGAATACCACCAAAGTCCAACTCAGAGAACCAATGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGGATGAATACCACCAAAGTCCAACTCAGAGAACCAATGAGTTT  100

seq1  TATTGGTGTTCCTTACAGAAGTATGGGTGAGGGGTTACTTACAGAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGTTCCTTACAGAAGTATGGGTGAGGGGTTACTTACAGAAGCAG  150

seq1  AAATGACTCAAAGGACAGCTGCATCAGCAAAGATCACCCCTGCATGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTCAAAGGACAGCTGCATCAGCAAAGATCACCCCTGCATGGATG  200

seq1  ACAGCTCACAACATCTGGGAACCTGGAACACTGTACACCTCCAGGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCACAACATCTGGGAACCTGGAACACTGTACACCTCCAGGGAGCT  250

seq1  CAATAGGCTGGAGGCAGTTAACTGGTCTCTATTTCTTTAGGTCAGCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGCTGGAGGCAGTTAACTGGTCTCTATTTCTTTAGGTCAGCTAAC  300

seq1  CTTGTTTTAAACTGACTCTCAGCAGTCTTCACTGCTTATATAGTCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTAAACTGACTCTCAGCAGTCTTCACTGCTTATATAGTCTTGTG  350

seq1  TGGGAGGGCACTGGTGAACCTCATCAGTTTTGGGAACTTCCTGTAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGCACTGGTGAACCTCATCAGTTTTGGGAACTTCCTGTAGCTAT  400

seq1  TTGAATTGTTTAAGTTTCCCTGCATTAAAGAGTTCTCCTGCAGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGTTTAAGTTTCCCTGCATTAAAGAGTTCTCCTGCAGCATGGAA  450

seq1  TGTTTCAGCATTGCTACACAACAGATCCAGGTCCCAGGATGCCATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGCATTGCTACACAACAGATCCAGGTCCCAGGATGCCATTTCAT  500

seq1  AGGGCATCTCTGTCTTACTTTGAGGCTTTCCTGAAAAAATTGACTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCTCTGTCTTACTTTGAGGCTTTCCTGAAAAAATTGACTCTGAT  550

seq1  ATAAGCATGTTGATTCCTTCATTTTGAATTGGACTAAATAAAGAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATGTTGATTCCTTCATTTTGAATTGGACTAAATAAAGAAAAGTA  600

seq1  TCTCAAGGAGCTCTGGTGTCCACCGTCAGGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGAGCTCTGGTGTCCACCGTCAGGAATTC  635