BAC Information

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BAC

Clone NameB6Ng01-166L18
Chromosome10 (Build37)
Map Location 72,889,723 - 72,987,429
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L18.bB6Ng01-166L18.g
ACCDH958426DH958427
length1,086395
definitionDH958426|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L18, 5' end.DH958427|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,889,723 - 72,890,809)(72,987,029 - 72,987,429)
sequence
gaattctgaactacaaaaacacttgcccattgtcccttcaaacatgactg
ccatagggaagttttttgtttagttttgtagtttcagtataaagctgatg
aatgctctaattgtaaaaactgtttgggataagtagaaactgagattcac
aatatctttttctctcaccaatcataaaatgtcattgggggtagggtgat
ggatgatcaggccaagctctgggtcatgtgatattgaatacattggcatg
attttcatttttctgaaatgattcttggggaatttattgatattcacatg
tattaattgctagagtcttcagtatttttgaaaattcttaagtaaccaaa
cattgacatatattctaaataatttatttttaaaaatgtattcaaggcct
tataatcttggaatttcttggggttttaggctttagactttaatgtaatt
gtgaaagtacattttcttaaattgaggtgaaaataaaattccagaaatat
gcatataaacatcaaatgtgattagagcatcccaaatgtaattaagaata
ctaaatcaaagattaaagttaaaacatagttttaattcttttctcaatac
atatgcaaccaagggctttgcatatgccagatgaaagtcagtctccctcc
ctccctccctctcattccctctctctcccacacattcagaccttttattt
tattttatatttacaatttcttgtgatttccatgtataattttttataaa
tttatttgtaattcttgattaaatgaatgtaagactcttacattctcaaa
catcatagcctgtattctaggtggagacaagaggtgagaaattatcttta
acttgttttctgtaaggaaattgatgtgctaacttctccttttatgtgat
acacatcatgatacactctaaagactgattgattttttttttcgatacac
agttttgtggtttaaactcacgtaaaaccatttcgatttccagctcctgc
ctgagtaacttgccaaatctgatcagttttcaagagtgaagaatttcaaa
gaaagggggttcacgatgaaaaaaccccagaaatag
ttctgtttggttcttctgtcttctacaattgagtgactccttcatttaca
gaagcttccttagtttcctttttagagtctcagttgcttcgtttaacttt
tcttcatgctgtttgttctgccttccaaattggctatttatctattttgt
ctgggttcttaatagattttcttctttcactcatctacttacttgggtcc
tttaggtggtcattgatcctttttaaatattgcaatctgaatttccttct
ggcattttgcctatatcacctttggtttgtggtttcaaggagtagtgcct
tttatagggatcagcatactggtctgttgtttcctttcttgtctcttcat
tctattgttctcttctctcctctcctctcctctcctctcctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72889723_72890809
seq2: B6Ng01-166L18.b_44_1129

seq1  GAATTCTGAACTACAAAAACACTTGCCCATTGTCCCTTCAAACATGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTACAAAAACACTTGCCCATTGTCCCTTCAAACATGACTG  50

seq1  CCATAGGGAAGTTTTTTGTTTAGTTTTGTAGTTTCAGTATAAAGCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGAAGTTTTTTGTTTAGTTTTGTAGTTTCAGTATAAAGCTGATG  100

seq1  AATGCTCTAATTGTAAAAACTGTTTGGGATAAGTAGAAACTGAGATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTAATTGTAAAAACTGTTTGGGATAAGTAGAAACTGAGATTCAC  150

seq1  AATATCTTTTTCTCTCACCAATCATAAAATGTCATTGGGGGTAGGGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTTTCTCTCACCAATCATAAAATGTCATTGGGGGTAGGGTGAT  200

seq1  GGATGATCAGGCCAAGCTCTGGGTCATGTGATATTGAATACATTGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATCAGGCCAAGCTCTGGGTCATGTGATATTGAATACATTGGCATG  250

seq1  ATTTTCATTTTTCTGAAATGATTCTTGGGGAATTTATTGATATTCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTTCTGAAATGATTCTTGGGGAATTTATTGATATTCACATG  300

seq1  TATTAATTGCTAGAGTCTTCAGTATTTTTGAAAATTCTTAAGTAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTGCTAGAGTCTTCAGTATTTTTGAAAATTCTTAAGTAACCAAA  350

seq1  CATTGACATATATTCTAAATAATTTATTTTTAAAAATGTATTCAAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACATATATTCTAAATAATTTATTTTTAAAAATGTATTCAAGGCCT  400

seq1  TATAATCTTGGAATTTCTTGGGGTTTTAGGCTTTAGACTTTAATGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTTGGAATTTCTTGGGGTTTTAGGCTTTAGACTTTAATGTAATT  450

seq1  GTGAAAGTACATTTTCTTAAATTGAGGTGAAAATAAAATTCCAGAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTACATTTTCTTAAATTGAGGTGAAAATAAAATTCCAGAAATAT  500

seq1  GCATATAAACATCAAATGTGATTAGAGCATCCCAAATGTAATTAAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAACATCAAATGTGATTAGAGCATCCCAAATGTAATTAAGAATA  550

seq1  CTAAATCAAAGATTAAAGTTAAAACATAGTTTTAATTCTTTTCTCAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAAAGATTAAAGTTAAAACATAGTTTTAATTCTTTTCTCAATAC  600

seq1  ATATGCAACCAAGGGCTTTGCATATGCCAGATGAAAGTCAGTCTCCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAACCAAGGGCTTTGCATATGCCAGATGAAAGTCAGTCTCCCTCC  650

seq1  CTCCCTCCCTCTCATTCCCTCTCTCTCCCACACATTCAGACCTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCTCATTCCCTCTCTCTCCCACACATTCAGACCTTTTATTT  700

seq1  TATTTTATATTTACAATTTCTTGTGATTTCCATGTATAATTTTTTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTTACAATTTCTTGTGATTTCCATGTATAATTTTTTATAAA  750

seq1  TTTATTTGTAATTCTTGATTAAATGAATGTAAGACTCTTACATTCTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTAATTCTTGATTAAATGAATGTAAGACTCTTACATTCTCAAA  800

seq1  CATCATAGCCTGTATTCTAGGTGGAGACAAGAGGTGAGAATTTATCTTTA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCATAGCCTGTATTCTAGGTGGAGACAAGAGGTGAGAAATTATCTTTA  850

seq1  ACTTGTTTTCTGTAAGGAAATTGATGTGCTAACTTCTCCTTTTATGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTCTGTAAGGAAATTGATGTGCTAACTTCTCCTTTTATGTGAT  900

seq1  ACACATCATGATACACTCTAAAGACTGATTGATTTTTTTTTTCGATACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATGATACACTCTAAAGACTGATTGATTTTTTTTTTCGATACAC  950

seq1  AGTTTTGTGGTTTAAACTCACGTAAAACCATTTCGATTTCCAGCTCCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGGTTTAAACTCACGTAAAACCATTTCGATTTCCAGCTCCTGC  1000

seq1  CTGAGTAACTTGCCAAATCTGATCAGTTTTCAAAGAGTGAAGAATTTCAA  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAGTAACTTGCCAAATCTGATCAGTTTTC-AAGAGTGAAGAATTTCAA  1049

seq1  AGAAAGGGGGTTTACAGATGAAAAAA-CACAGAAATAG  1087
      |||||||||||| || |||||||||| | |||||||||
seq2  AGAAAGGGGGTTCAC-GATGAAAAAACCCCAGAAATAG  1086

seq1: chr10_72987029_72987429
seq2: B6Ng01-166L18.g_70_470 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAAGAGAACAATAGAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAAGAGAACAATAGAATGAA  50

seq1  GAGACAAGAAAGGAAACAACAGACCAGTATGCTGATCCCTATAAAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGAAAGGAAACAACAGACCAGTATGCTGATCCCTATAAAAGGCA  100

seq1  CTACTCCTTGAAACCACAAACCAAAGGTGATATAGGCAAAATGCCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTGAAACCACAAACCAAAGGTGATATAGGCAAAATGCCAGAAG  150

seq1  GAAATTCAGATTGCAATATTTAAAAAGGATCAATGACCACCTAAAGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAGATTGCAATATTTAAAAAGGATCAATGACCACCTAAAGGACC  200

seq1  CAAGTAAGTAGATGAGTGAAAGAAGAAAATCTATTAAGAACCCAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGTAGATGAGTGAAAGAAGAAAATCTATTAAGAACCCAGACAAA  250

seq1  ATAGATAAATAGCCAATTTGGAAGGCAGAACAAACAGCATGAAGAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAATAGCCAATTTGGAAGGCAGAACAAACAGCATGAAGAAAAGT  300

seq1  TAAACGAAGCAACTGAGACTCTAAAAAGGAAACTAAGGAAGCTTCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGAAGCAACTGAGACTCTAAAAAGGAAACTAAGGAAGCTTCTGTAA  350

seq1  ATGAAGGAGTCACTCAATTGTAGAAGACAGAAGAACCAAACAGAAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGTCACTCAATTGTAGAAGACAGAAGAACCAAACAGAAGAATT  400

seq1  C  401
      |
seq2  C  401