BAC Information

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BAC

Clone NameB6Ng01-166O06
Chromosome10 (Build37)
Map Location 63,673,491 - 63,785,350
singlet/doubletdoublet
Overlap geneCtnna3
Upstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Lrrtm3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O06.bB6Ng01-166O06.g
ACCDH958536DH958537
length1,1121,225
definitionDH958536|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O06, 5' end.DH958537|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,784,221 - 63,785,350)(63,673,491 - 63,674,712)
sequence
gaattctaggaaggccagaagaacgtcttgactgcctttggagtctggac
ttacttataggctgctgtaaggtaaagatttttctgaaagatatactttt
attattttaattatgctcatgggggaggtacaggcatgtgtgtgtaggtg
cctgcagaggtcatcgatatcagatgcccctggagatagaattctaggca
ggtctgagccacctgatatgggtgctggaaactgaactcaagtctgcttc
aaaagtagtgttttcttaaccactaagcaacctctcaactcccaataaag
aactttaagatatttttattgggtattgaagaattgatgatgttcaagct
agtagatgcctgaagccttaacatataataacctaggtagcataacatgc
ctcctaatggtaccccagggcacatcagcctctgtttatataataaggaa
tctatgtcttccatggaaacacattctacttagggacaaattccttttat
gtaaagaaacaattgtgaaatggcccatgcactttggttttcttttattc
attgtctattacaagtgttttgttctttcccaaatgcagttagccttgca
cttacttacttacatagcacttcaaaaagaaaaaaaggtggcaaattgtg
gcttctaagtgtcagataatctaggtcctttgatcaggaggggattgtca
cagggacttgcatgtgccttggtaggggctccttctccttcagatcaaac
tcaagaagacagaaaaacaacagcaaagactttatatggatatgggccaa
ccttgaacatagtaataagtttcacgcagagcctatggactgtgtgtctg
catgtcagtgtggcccaggaacagactcccatctgccagaggagatctaa
aatagtttagagatgtcaccaggaacaagtgctgacttggcagttggtag
ctaatgattggaaaggagaatgactctcagaaatgtcagatgagatggaa
gttaggggtccctgccctttggtgatctaaaggttcatgattactgacca
aataatagcagaaagagcactctattactaattatttacctttttaatat
gcattgtgtgta
gaattccattccagttcccttcttctcccagggccactgatctttcacta
tggatgcatgctgttggcttttgaaaaccaacagctttgtgtatgacaat
agggaaagctgaaatggcaaaatctttatttttttattttttggttttgt
tttgttacaacacaggttttcattgttgttgttgtgtgtgttttacccct
ctttagtgctcacaccccagactgctctagacctttggctaatatccaga
gttcagagaaatctagttatgactcttttgctttcattcttctacttgta
taaagaagaaaatcttgagaatcatcactgtactgtttttgtaaaagttg
ttattttgtgttaatatgttgaatatcaattagctgaaagtttgcatgtg
tgcttcctggatatacacatgctcttgtgttaattttccagtgttcttct
tttccttctgaactattaaatgtcttcattattttaatgtataaaaaact
taaaatgccacaggggatcaaacattttctctagaatttcattgtctttg
agaaataatttatattaataaataaatgatgtttgtataaattattcatc
atagcttgaccctaagtgaaattctgaaggcaatttttacttgaaacttt
tcactctcagtcaccttttagcctcttttgtctcaatttcctttaaaaat
ggattttctttctctccctttcccctctaaatattttgatagatataata
ttgcctacactggcaacctctgttcttcctagttattatctatctatcta
tctatctatctatctatctatctatctatcatctatcgtctgtctatgta
tgtatgtatgtatgtatgtatgtatctatctatctatctatctatctatc
tatctatctgtctatctacagattacagaatatctatacttgtttgagat
acttttgagagccaatgttccatatattcagttgcagcaaagactcacat
tcaccaagtttcttggcttggtcatcttacaggcatctgtgatgatttct
tcttccctggtttatcatcatctttgttgaagaatttattttctagggtt
tctgcctacctgacatgccctacatgaagtttcagcggtccattgcttaa
cccagacatgtgccttttctttccagggaagcatttgcctcagtctggtc
aatctggacttctttgtaacttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63784221_63785350
seq2: B6Ng01-166O06.b_47_1158 (reverse)

seq1  TACACACAAATGCATAATTTAAAAATAGGTAAATATATTAAGTAATTAAG  50
      ||||||| ||||||||  ||||||  ||||||||| ||| ||||||  ||
seq2  TACACAC-AATGCATA--TTAAAA--AGGTAAATA-ATT-AGTAAT--AG  41

seq1  AGTGGCTCTTTCTGCTATTAATTTTTGGTTCAGTAATCCATGAAACCTTT  100
      ||| ||||||||||||||||   ||||| |||||||| |||| |||||||
seq2  AGT-GCTCTTTCTGCTATTA---TTTGG-TCAGTAAT-CATG-AACCTTT  84

seq1  AGATCACCAAGGGGCAGGGACCCCTAACCTTCCATCTCATCTGACATTTC  150
      |||||||||| |||||||||||||||| ||||||||||||||||||||| 
seq2  AGATCACCAAAGGGCAGGGACCCCTAA-CTTCCATCTCATCTGACATTT-  132

seq1  CTGAGAGTCATTCTCCTTTCCAATCATTAGCTACCAACTGCCAAGTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCATTCTCCTTTCCAATCATTAGCTACCAACTGCCAAGTCAGC  182

seq1  ACTTGTTCCTGGTGACATCTCTAAACTATTTTAGATCTCCTCTGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCCTGGTGACATCTCTAAACTATTTTAGATCTCCTCTGGCAGAT  232

seq1  GGGAGTCTGTTCCTGGGCCACACTGACATGCAGACACACAGTCCATAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTGTTCCTGGGCCACACTGACATGCAGACACACAGTCCATAGGC  282

seq1  TCTGCCTGAAACTTATTACTATGTTCAAGGTTGGCCCATATCCATATAAA  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGAAACTTATTACTATGTTCAAGGTTGGCCCATATCCATATAAA  332

seq1  GTCTTTGCTGTTGTTTTTCTGTCTTCTTGAGTTTGATCTGAAGGAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTGTTGTTTTTCTGTCTTCTTGAGTTTGATCTGAAGGAGAAGG  382

seq1  AGCCCCTACCAAGGCACATGCAAGTCCCTGTGACAATCCCCTCCTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTACCAAGGCACATGCAAGTCCCTGTGACAATCCCCTCCTGATCA  432

seq1  AAGGACCTAGATTATCTGACACTTAGAAGCCACAATTTGCCACCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTAGATTATCTGACACTTAGAAGCCACAATTTGCCACCTTTTTT  482

seq1  TCTTTTTGAAGTGCTATGTAAGTAAGTAAGTGCAAGGCTAACTGCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGAAGTGCTATGTAAGTAAGTAAGTGCAAGGCTAACTGCATTTG  532

seq1  GGAAAGAACAAAACACTTGTAATAGACAATGAATAAAAGAAAACCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACAAAACACTTGTAATAGACAATGAATAAAAGAAAACCAAAGT  582

seq1  GCATGGGCCATTTCACAATTGTTTCTTTACATAAAAGGAATTTGTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCCATTTCACAATTGTTTCTTTACATAAAAGGAATTTGTCCCTA  632

seq1  AGTAGAATGTGTTTCCATGGAAGACATAGATTCCTTATTATATAAACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATGTGTTTCCATGGAAGACATAGATTCCTTATTATATAAACAGA  682

seq1  GGCTGATGTGCCCTGGGGTACCATTAGGAGGCATGTTATGCTACCTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGTGCCCTGGGGTACCATTAGGAGGCATGTTATGCTACCTAGGT  732

seq1  TATTATATGTTAAGGCTTCAGGCATCTACTAGCTTGAACATCATCAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTTAAGGCTTCAGGCATCTACTAGCTTGAACATCATCAATTC  782

seq1  TTCAATACCCAATAAAAATATCTTAAAGTTCTTTATTGGGAGTTGAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACCCAATAAAAATATCTTAAAGTTCTTTATTGGGAGTTGAGAGG  832

seq1  TTGCTTAGTGGTTAAGAAAACACTACTTTTGAAGCAGACTTGAGTTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGTGGTTAAGAAAACACTACTTTTGAAGCAGACTTGAGTTCAGT  882

seq1  TTCCAGCACCCATATCAGGTGGCTCAGACCTGCCTAGAATTCTATCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACCCATATCAGGTGGCTCAGACCTGCCTAGAATTCTATCTCCA  932

seq1  GGGGCATCTGATATCGATGACCTCTGCAGGCACCTACACACACATGCCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATCTGATATCGATGACCTCTGCAGGCACCTACACACACATGCCTG  982

seq1  TACCTCCCCCATGAGCATAATTAAAATAATAAAAGTATATCTTTCAGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCCCATGAGCATAATTAAAATAATAAAAGTATATCTTTCAGAAA  1032

seq1  AATCTTTACCTTACAGCAGCCTATAAGTAAGTCCAGACTCCAAAGGCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTACCTTACAGCAGCCTATAAGTAAGTCCAGACTCCAAAGGCAGT  1082

seq1  CAAGACGTTCTTCTGGCCTTCCTAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  CAAGACGTTCTTCTGGCCTTCCTAGAATTC  1112

seq1: chr10_63673491_63674712
seq2: B6Ng01-166O06.g_67_1291

seq1  GAATTCCATTCCAGTTCCCTTCTTCTCCCAGGGCCACTGATCTTTCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCAGTTCCCTTCTTCTCCCAGGGCCACTGATCTTTCACTA  50

seq1  TGGATGCATGCTGTTGGCTTTTGAAAACCAACAGCTTTGTGTATGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCATGCTGTTGGCTTTTGAAAACCAACAGCTTTGTGTATGACAAT  100

seq1  AGGGAAAGCTGAAATGGCAAAATCTTTATTTTTTTATTTTTTGGTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCTGAAATGGCAAAATCTTTATTTTTTTATTTTTTGGTTTTGT  150

seq1  TTTGTTACAACACAGGTTTTCATTGTTGTTGTTGTGTGTGTTTTACCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACAACACAGGTTTTCATTGTTGTTGTTGTGTGTGTTTTACCCCT  200

seq1  CTTTAGTGCTCACACCCCAGACTGCTCTAGACCTTTGGCTAATATCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGCTCACACCCCAGACTGCTCTAGACCTTTGGCTAATATCCAGA  250

seq1  GTTCAGAGAAATCTAGTTATGACTCTTTTGCTTTCATTCTTCTACTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGAAATCTAGTTATGACTCTTTTGCTTTCATTCTTCTACTTGTA  300

seq1  TAAAGAAGAAAATCTTGAGAATCATCACTGTACTGTTTTTGTAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAAAATCTTGAGAATCATCACTGTACTGTTTTTGTAAAAGTTG  350

seq1  TTATTTTGTGTTAATATGTTGAATATCAATTAGCTGAAAGTTTGCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTGTTAATATGTTGAATATCAATTAGCTGAAAGTTTGCATGTG  400

seq1  TGCTTCCTGGATATACACATGCTCTTGTGTTAATTTTCCAGTGTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGGATATACACATGCTCTTGTGTTAATTTTCCAGTGTTCTTCT  450

seq1  TTTCCTTCTGAACTATTAAATGTCTTCATTATTTTAATGTATAAAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTGAACTATTAAATGTCTTCATTATTTTAATGTATAAAAAACT  500

seq1  TAAAATGCCACAGGGGATCAAACATTTTCTCTAGAATTTCATTGTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCCACAGGGGATCAAACATTTTCTCTAGAATTTCATTGTCTTTG  550

seq1  AGAAATAATTTATATTAATAAATAAATGATGTTTGTATAAATTATTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATTTATATTAATAAATAAATGATGTTTGTATAAATTATTCATC  600

seq1  ATAGCTTGACCCTAAGTGAAATTCTGAAGGCAATTTTTACTTGAAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGACCCTAAGTGAAATTCTGAAGGCAATTTTTACTTGAAACTTT  650

seq1  TCACTCTCAGTCACCTTTTAGCCTCTTTTGTCTCAATTTCCTTTAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCAGTCACCTTTTAGCCTCTTTTGTCTCAATTTCCTTTAAAAAT  700

seq1  GGATTTTCTTTCTCTCCCTTTCCCCTCTAAATATTTTGATAGATATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTTTCTCTCCCTTTCCCCTCTAAATATTTTGATAGATATAATA  750

seq1  TTGCCTACACTGGCAACCTCTGTTCTTCCTAGTTATTATCTATCTATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACACTGGCAACCTCTGTTCTTCCTAGTTATTATCTATCTATCTA  800

seq1  TCTATCTATCTATCTATCTATCTATCTATCATCTATCGTCTGTCTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCATCTATCGTCTGTCTATGTA  850

seq1  TGTATGTATGTATGTATGTATGTATCTATCTATCTATCTATCTATCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTATGTATCTATCTATCTATCTATCTATCTATC  900

seq1  TATCTATCTGTCTATCTACAGATTACAGAATATCTATACTTGTTTGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTGTCTATCTACAGATTACAGAATATCTATACTTGTTTGAGAT  950

seq1  AACTTTTGAGAGCCAATGTTCCATATATTCAGTTGCAGCAAAGACTCCAC  1000
       ||||||||||||||||||||||||||||||||||||||||||||||   
seq2  -ACTTTTGAGAGCCAATGTTCCATATATTCAGTTGCAGCAAAGACTC--A  997

seq1  CATTCACCAAGTTTCTTGGCTTGGTCATCTTACAAGGCATCTGTGATGA-  1049
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CATTCACCAAGTTTCTTGGCTTGGTCATCTTAC-AGGCATCTGTGATGAT  1046

seq1  TTCTTCTTCCCTGGTTTATCATCCATC-TTGTTGAGTA--TTATTTTCTA  1096
      |||||||||||||||||||||| |||| |||||||  |  ||||||||||
seq2  TTCTTCTTCCCTGGTTTATCAT-CATCTTTGTTGAAGAATTTATTTTCTA  1095

seq1  GGGTTTCTG-CTACCTGACATG-CCTACATG-AGTTTCAGCTGTCATTGG  1143
      ||||||||| |||||||||||| |||||||| ||||||||| |||  | |
seq2  GGGTTTCTGCCTACCTGACATGCCCTACATGAAGTTTCAGCGGTCCATTG  1145

seq1  CTTAACCCAG-CA--TGCC--TTCCTTCCAGGGGAAAGCATTTGCCTCAA  1188
      |||||||||| ||  ||||  ||| ||||||||  |||||||||||||| 
seq2  CTTAACCCAGACATGTGCCTTTTCTTTCCAGGG--AAGCATTTGCCTCA-  1192

seq1  TGCCTTGTCATTCTGGACTTCTTGTGT-ACTTCCC  1222
       | || |||| |||||||||||| ||| |||||||
seq2  -GTCTGGTCAATCTGGACTTCTT-TGTAACTTCCC  1225