BAC Information

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BAC

Clone NameB6Ng01-167A14
Chromosome10 (Build37)
Map Location 21,708,515 - 21,790,372
singlet/doubletdoublet
Overlap geneSgk, LOC667254, LOC665523, 4930444G20Rik
Upstream geneAhi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133
Downstream geneLOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A14.bB6Ng01-167A14.g
ACCDH958642DH958643
length1,1571,053
definitionDH958642|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A14, 5' end.DH958643|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,789,192 - 21,790,372)(21,708,515 - 21,709,588)
sequence
gaattctctagattaggcccgggctatttcaagctaaaggattatatggg
caaaacctaccaagtaacaattttgtgaagccaaagtaactcatatcttc
tcccagagcaggctaggcttgcttagtgacatgtccagcagatgccccag
acatgcaagcaagcaggcagtttataaaaagcggaacttaaccattagcc
tgtgtaatcttgtgtaacccatcactttagaggaatagctgaggcactga
aatattttgcaacattcagcaattttttttgaagagtagctcaattggta
ccaagaggtggtccatctcagcctacctgacagggttcattcaagataga
ggaatttcttcagggcttacacaacttaaaaacaattttgttttgataag
cctagcacaataaatgtatcctctaaacacaatgttcactatcacaaagg
cagccctgctaggttattcagagatgtaagactaatgtggtagtttcaag
tttttttcttggtatgggaacaaatccctccatggtgtaattagaaagaa
gagaaagaggcctggtacaaacaaaatgatacctgaaaaaatagcaatca
caagaaattcaaaccttttacagaaaaaaaagtacattttttccttacag
taaaacattgctataaatacatgtgcacattttgttaatattttcagtgg
aaaaaaagaaacattttgtgtctcaactctcatctcacatttttgtaaaa
atatctccacacctttgagagtagatcaaagagatgctcaaagtgtgtgt
gggtgtgtgtgtgtttgtgtgaaatggaccagagggtaaagtacttactg
tttaataatggtggctggagttcagattccaggacccatagaaaatacac
acctctgtaactacagctacaattgaattctgcctactgttttctaggga
ggatgtcagggattgtgttattgctaggattgtaactgaagtagtgatgt
atctttctcatggatactatggacatggagagattttatttatctctttg
ggatgatccttgttgatgttccagttctcagttctcatatgaaacactga
catacaactcgtcgctatgaaggagctctatcaggcagagcaactcaaag
aatctaa
gaattcctaccacccaggctgttgaggatggagatatgcaaatggttaat
cccaacacacctgtgtactaactgggttcgaggcctttgttttctctaag
tagctctgactgtctgagctggagtctacctgtagaccaggctggcctgg
gcagacagaacttatagggggtctgcctgcctctgtcctcggagtgctgg
gttaaaagtgtgggccaccttgcctccttgtttgaggctttttatatgaa
gttgtaaggtgtgtgtatcaccaacagatatagtcatgttttccatatga
aagtccatcttgaaagaggcatataatttctttatgttcattatttttca
caatttatgggatgaaaatatcagtagccccactctacagagatgacaag
aaattcttgcagatagcaggcctcacttagagctaagtgtttgaccaggc
attcgttcaccatctgtattcactgtgtctcctgagcttgtgtgagggac
ataaaaaatatggtcaagatgaaagaccattaatgtacaagaaaagacac
caagcaattctccagcccctgccccccactactactatcacgttgtcttt
tctttctgtcatctgtgggcagggtttgtaggacactgtagcctaggggt
ggcctcaactgctctagcttcctcatagaacaattacagggtcaggatgg
gaaagatttcaggagagacttggaatgtgagccaaggaaggcttttagct
tttaccctagtttgacagatctgtcagaaattgggagttgttttctttct
atgagcactttgtaaaatagggagggttgaaagagagcgccttaaccgtc
tccatcttggatctaattttcataatctcaagtcatggatctgcaaagaa
ataccaggttctgtgttaatgatgatcagacaggatttgagatttctgga
atgtgggcttcatgagtagattcaccctgagcatgaagctgagagagagt
ggctctcacccagtcactgtctgatagttgtatgcatggtaagggcttta
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21789192_21790372
seq2: B6Ng01-167A14.b_50_1206 (reverse)

seq1  TTAGATCTTTTGAGTTGCCTTCCTGCCTGAT-GAGCTTCCTTTCATAGCG  49
      ||||||  ||||||||||    ||||||||| |||||  | |||||||||
seq2  TTAGATTCTTTGAGTTGC---TCTGCCTGATAGAGCT--CCTTCATAGCG  45

seq1  AACGAAGGGTGGTATGGTTCAGTGTTTCAATATTGGAGGAAACTTGAGAA  99
       ||||   || |||||  |||||||||| ||||  |||  ||| |||| |
seq2  -ACGA---GTTGTATG--TCAGTGTTTC-ATAT--GAG--AAC-TGAG-A  82

seq1  ACTGGGACCAATTCACCAAGGATCAATCCCAAAGAGAATAAATAAAATCT  149
      ||||| ||    ||| |||||||| ||||||||||| |||||||||||||
seq2  ACTGGAAC---ATCAACAAGGATC-ATCCCAAAGAG-ATAAATAAAATCT  127

seq1  CTCCATTGTCCATAGTATCCATTGAGAAAGATACATCACTACTTCAGTTA  199
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCA-TGTCCATAGTATCCA-TGAGAAAGATACATCACTACTTCAGTTA  175

seq1  CAATCCTAGCAATAACACAATCCCTGACATCCTCCCTAGAAAACAGTAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAGCAATAACACAATCCCTGACATCCTCCCTAGAAAACAGTAGG  225

seq1  CAGAATTCAATTGTAGCTGTAGTTACAGAGGTGTGTATTTTCTATGGGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAATTGTAGCTGTAGTTACAGAGGTGTGTATTTTCTATGGGTC  275

seq1  CTGGAATCTGAACTCCAGCCACCATTATTAAACAGTAAGTACTTTACCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCTGAACTCCAGCCACCATTATTAAACAGTAAGTACTTTACCCT  325

seq1  CTGGTCCATTTCACACAAACACACACACACCCACACACACTTTGAGCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCATTTCACACAAACACACACACACCCACACACACTTTGAGCATC  375

seq1  TCTTTGATCTACTCTCAAAGGTGTGGAGATATTTTTACAAAAATGTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATCTACTCTCAAAGGTGTGGAGATATTTTTACAAAAATGTGAGA  425

seq1  TGAGAGTTGAGACACAAAATGTTTCTTTTTTTCCACTGAAAATATTAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGAGACACAAAATGTTTCTTTTTTTCCACTGAAAATATTAACA  475

seq1  AAATGTGCACATGTATTTATAGCAATGTTTTACTGTAAGGAAAAAATGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCACATGTATTTATAGCAATGTTTTACTGTAAGGAAAAAATGTA  525

seq1  CTTTTTTTTCTGTAAAAGGTTTGAATTTCTTGTGATTGCTATTTTTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTCTGTAAAAGGTTTGAATTTCTTGTGATTGCTATTTTTTCAG  575

seq1  GTATCATTTTGTTTGTACCAGGCCTCTTTCTCTTCTTTCTAATTACACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTTTGTTTGTACCAGGCCTCTTTCTCTTCTTTCTAATTACACCA  625

seq1  TGGAGGGATTTGTTCCCATACCAAGAAAAAAACTTGAAACTACCACATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGATTTGTTCCCATACCAAGAAAAAAACTTGAAACTACCACATTA  675

seq1  GTCTTACATCTCTGAATAACCTAGCAGGGCTGCCTTTGTGATAGTGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATCTCTGAATAACCTAGCAGGGCTGCCTTTGTGATAGTGAACA  725

seq1  TTGTGTTTAGAGGATACATTTATTGTGCTAGGCTTATCAAAACAAAATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAGAGGATACATTTATTGTGCTAGGCTTATCAAAACAAAATTG  775

seq1  TTTTTAAGTTGTGTAAGCCCTGAAGAAATTCCTCTATCTTGAATGAACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTTGTGTAAGCCCTGAAGAAATTCCTCTATCTTGAATGAACCC  825

seq1  TGTCAGGTAGGCTGAGATGGACCACCTCTTGGTACCAATTGAGCTACTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTAGGCTGAGATGGACCACCTCTTGGTACCAATTGAGCTACTCT  875

seq1  TCAAAAAAAATTGCTGAATGTTGCAAAATATTTCAGTGCCTCAGCTATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAATTGCTGAATGTTGCAAAATATTTCAGTGCCTCAGCTATTC  925

seq1  CTCTAAAGTGATGGGTTACACAAGATTACACAGGCTAATGGTTAAGTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGTGATGGGTTACACAAGATTACACAGGCTAATGGTTAAGTTCC  975

seq1  GCTTTTTATAAACTGCCTGCTTGCTTGCATGTCTGGGGCATCTGCTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATAAACTGCCTGCTTGCTTGCATGTCTGGGGCATCTGCTGGAC  1025

seq1  ATGTCACTAAGCAAGCCTAGCCTGCTCTGGGAGAAGATATGAGTTACTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTAAGCAAGCCTAGCCTGCTCTGGGAGAAGATATGAGTTACTTT  1075

seq1  GGCTTCACAAAATTGTTACTTGGTAGGTTTTGCCCATATAATCCTTTAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACAAAATTGTTACTTGGTAGGTTTTGCCCATATAATCCTTTAGC  1125

seq1  TTGAAATAGCCCGGGCCTAATCTAGAGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  TTGAAATAGCCCGGGCCTAATCTAGAGAATTC  1157

seq1: chr10_21708515_21709588
seq2: B6Ng01-167A14.g_67_1119

seq1  GAATTCCTACCACCCAGGCTGTTGAGGATGGAGATATGCAAATGGTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCACCCAGGCTGTTGAGGATGGAGATATGCAAATGGTTAAT  50

seq1  CCCAACACACCTGTGTACTAACTGGGTTCGAGGCCTTTGTTTTCTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACCTGTGTACTAACTGGGTTCGAGGCCTTTGTTTTCTCTAAG  100

seq1  TAGCTCTGACTGTCTGAGCTGGAGTCTACCTGTAGACCAGGCTGGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGACTGTCTGAGCTGGAGTCTACCTGTAGACCAGGCTGGCCTGG  150

seq1  GCAGACAGAACTTATAGGGGGTCTGCCTGCCTCTGTCCTCGGAGTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGAACTTATAGGGGGTCTGCCTGCCTCTGTCCTCGGAGTGCTGG  200

seq1  GTTAAAAGTGTGGGCCACCTTGCCTCCTTGTTTGAGGCTTTTTATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTGTGGGCCACCTTGCCTCCTTGTTTGAGGCTTTTTATATGAA  250

seq1  GTTGTAAGGTGTGTGTATCACCAACAGATATAGTCATGTTTTCCATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGGTGTGTGTATCACCAACAGATATAGTCATGTTTTCCATATGA  300

seq1  AAGTCCATCTTGAAAGAGGCATATAATTTCTTTATGTTCATTATTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATCTTGAAAGAGGCATATAATTTCTTTATGTTCATTATTTTTCA  350

seq1  CAATTTATGGGATGAAAATATCAGTAGCCCCACTCTACAGAGATGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATGGGATGAAAATATCAGTAGCCCCACTCTACAGAGATGACAAG  400

seq1  AAATTCTTGCAGATAGCAGGCCTCACTTAGAGCTAAGTGTTTGACCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGCAGATAGCAGGCCTCACTTAGAGCTAAGTGTTTGACCAGGC  450

seq1  ATTCGTTCACCATCTGTATTCACTGTGTCTCCTGAGCTTGTGTGAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCACCATCTGTATTCACTGTGTCTCCTGAGCTTGTGTGAGGGAC  500

seq1  ATAAAAAATATGGTCAAGATGAAAGACCATTAATGTACAAGAAAAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATATGGTCAAGATGAAAGACCATTAATGTACAAGAAAAGACAC  550

seq1  CAAGCAATTCTCCAGCCCCTGCCCCCCACTACTACTATCACGTTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATTCTCCAGCCCCTGCCCCCCACTACTACTATCACGTTGTCTTT  600

seq1  TCTTTCTGTCATCTGTGGGCAGGGTTTGTAGGACACTGTAGCCTAGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCATCTGTGGGCAGGGTTTGTAGGACACTGTAGCCTAGGGGT  650

seq1  GGCCTCAACTGCTCTAGCTTCCTCATAGAACAATTACAGGGTCAGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACTGCTCTAGCTTCCTCATAGAACAATTACAGGGTCAGGATGG  700

seq1  GAAAGATTTCAGGAGAGACTTGGAATGTGAGCCAAGGAAGGCTTTTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTCAGGAGAGACTTGGAATGTGAGCCAAGGAAGGCTTTTAGCT  750

seq1  TTTACCCTAGTTTGACAGATCTGTCAGAAATTGGGAGTTGTTTTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTAGTTTGACAGATCTGTCAGAAATTGGGAGTTGTTTTCTTTCT  800

seq1  ATGAGCACTTTGTAAAATAGGGAGGGTTGAAAGAGAGCGCCTTAACCGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTTTGTAAAATAGGGAGGGTTGAAAGAGAGCGCCTTAACCGTC  850

seq1  TCCATCTTGGATCTAATTTTCATAATCTCAAGTCATGGATCTGCAAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGGATCTAATTTTCATAATCTCAAGTCATGGATCTGCAAAGAA  900

seq1  ATACCAGGTTCTGTGTTAATGATGATCAAGACAAGGATTTGAGATTTCCT  950
      ||||||||||||||||||||||||||| |||| |||||||||||||| ||
seq2  ATACCAGGTTCTGTGTTAATGATGATC-AGAC-AGGATTTGAGATTT-CT  947

seq1  GGAATGTGGGCTTCATGAGTAGATTCACCCTGGAGCAATTGAAGCTGGAG  1000
      ||||||||||||||||||||||||||||||| |||||  |||||||    
seq2  GGAATGTGGGCTTCATGAGTAGATTCACCCT-GAGCA--TGAAGCT----  990

seq1  GAGGAAGAGTGGGCTCCTCAACCCAGTTCACTGTCTGGATTAGTTTGTAT  1050
      |||  ||||| |||| ||| |||||| ||||||||||   ||| ||||||
seq2  GAGAGAGAGT-GGCT-CTC-ACCCAG-TCACTGTCTG--ATAG-TTGTAT  1033

seq1  GCAATGGTAAGGGGCCTTTTAGAA  1074
      || ||||||||||    |||||||
seq2  GC-ATGGTAAGGG---CTTTAGAA  1053