BAC Information

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BAC

Clone NameB6Ng01-167D23
Chromosome10 (Build37)
Map Location 61,123,000 - 61,244,637
singlet/doubletdoublet
Overlap genePpa1, Sar1a, Tysnd1, Aifm2, H2afy2
Upstream geneCdh23, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1
Downstream geneLOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167D23.bB6Ng01-167D23.g
ACCDH958795DH958796
length6991,130
definitionDH958795|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D23, 5' end.DH958796|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,243,939 - 61,244,637)(61,123,000 - 61,124,143)
sequence
gaattcagtggcagacagttttaaatggaagagatcaacacccacagaga
ggcccgtgcaaaaattgaattctcataagactgttttgttgttgttgttt
ttgtttgtttggttttttttttttttgtaagaaatggccttaaagttagt
tgccggcttgataagtgcctttgaaaagtgtgtgttgtagagatgagcag
aaaagacatatgatctgctaggggtcagccaggcagcgttcactgagcag
gaagtcttttttttttttttttttttttttttggtttggggttttttttt
tttttttttttttttttccaaacagggtttctctgtgtagctctggctgt
cctggaactcactttgtaaaccaggctggcctccaactcaaaaatccatc
tgcctctgcctcccaagtcctgggattaaaggggtgtgccacccctgccc
agcaagcaggaactcttaaacaaatccaggcaaaaagagcaacatggatt
tgaggaaatcggggctctactctctgtgagcaccccacttccagcctggg
agatgctaaaataaaaatgtagccaacacaggaaaaaaattttatcactt
acttgtgctcctgggaaattgggtaccttctattgcctaggggtatgtgc
ctgtggacaaagactgtgtgcgtggcagttaggcactggtttttacctg
gaattccctatatagaccagactggcctctaccttacagcatctgcctgc
ctctgcctcctgatggatggctgggattaattatggtcgttcaccaccat
gcctagcttccttaggtgttttgtttgtttgtttgtttgtttgtttgttt
gttttaacagtgaccacacttgcatttgctacactctcagatgtttgaat
aactttaactagaaaggaaaactgacgttggataataattattttgtacg
tttcctaaggctcttattgttgtttttaattgcagttatttgtttaataa
tttatatgcgtgtggctgttggtggcgggcagaggtcagcttgcaggcca
tctggggatgaagcccagcagtgctgctctgtggccatcttgccagcaca
gtgcccttcctcggggatgctggtgtttggtccagctcgtcttacttctt
ggttcctggaattagtgaatgttctttttctcttctctatgttgttgtgc
ataacagctgtcggaggagcttttagttcagttttcaccatgtcagggat
gaaacaaatcctgaagttggaataacggaggggggatcatgcctacataa
tttgttttcttggatcctgactccagcagtgttgcacacccatctggcat
ttcatttcagattgctacaaaggaccctttaaacccaatcaagcaagatg
tgaaaaaggggaagctccgctatgtggcgaatctgttcccttataaaggg
tatatttggaactacggcgccatccctcaggtacgtgtccaagagcctcc
ttactcgctaaaaatgtacttttttttttcttttagcttagtaaaaatta
actcacttttgatcaaacgtttaaatgcagaaaatactggctatcacaga
gcagaaaagcactggatgggataattttattttaaacattttaatgactt
atttccaaggtaactagaagggatatgtctatgtttaagctcagattttc
taaaatgttccgttttctatggactcatttagactcccgactgacatttc
tcacagactagtattggtagtgaaagagagcttggtactaagcctggtct
tagccagcttagggcacatcctggttagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61243939_61244637
seq2: B6Ng01-167D23.b_45_743 (reverse)

seq1  CACGTAAAAACCAGTGCCTAACTGCCACGCACACAGTCTTTGTCCACAGG  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAAACCAGTGCCTAACTGCCACGCACACAGTCTTTGTCCACAGG  50

seq1  CACATACCCCTAGGCAATAGAAGGTACCCAATTTCCCAGGAGCACAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCCCTAGGCAATAGAAGGTACCCAATTTCCCAGGAGCACAAGTA  100

seq1  AGTGATAAAATTTTTTTCCTGTGTTGGCTACATTTTTATTTTAGCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAAATTTTTTTCCTGTGTTGGCTACATTTTTATTTTAGCATCTC  150

seq1  CCAGGCTGGAAGTGGGGTGCTCACAGAGAGTAGAGCCCCGATTTCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGAAGTGGGGTGCTCACAGAGAGTAGAGCCCCGATTTCCTCAA  200

seq1  ATCCATGTTGCTCTCTCTGCCTGGATCTGTTTAAGAGTTCCTGCTTGCTG  250
      |||||||||||||| | ||||||||| |||||||||||||||||||||||
seq2  ATCCATGTTGCTCTTTTTGCCTGGATTTGTTTAAGAGTTCCTGCTTGCTG  250

seq1  GGCAGTGGTGGCACACACCTTTAATCCCAGGACTTGGGAGGCAGAGGCAG  300
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCAGGGGTGGCACACCCCTTTAATCCCAGGACTTGGGAGGCAGAGGCAG  300

seq1  ATGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  350
      |||||||| |||||| |||||||||||||| |||||||||||||||||||
seq2  ATGGATTTTTGAGTTGGAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGA  350

seq1  CAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAA  400
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  CAGCCAGAGCTACACAGAGAAACCCTGTTTGGAAAAAAAAAAAAAAAAAA  400

seq1  AAAAAAAACACCAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTCC  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCCAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTCC  450

seq1  TGCTCAGTGAACGCTGCCTGGCTGACCCCTAGCAGATCATATGTCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGAACGCTGCCTGGCTGACCCCTAGCAGATCATATGTCTTTTC  500

seq1  TGCTCATCTCTACAACACACACTTTTCAAAGGCACTTATCAAGCCGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCTCTACAACACACACTTTTCAAAGGCACTTATCAAGCCGGCAA  550

seq1  CTAACTTTAAGGCCATTTCTTACAAAAAAAAAAAAAACCAAACAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTAAGGCCATTTCTTACAAAAAAAAAAAAAACCAAACAAACAAA  600

seq1  AACAACAACAACAAAACAGTCTTATGAGAATTCAATTTTTGCACGGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAACAGTCTTATGAGAATTCAATTTTTGCACGGGCCT  650

seq1  CTCTGTGGGTGTTGATCTCTTCCATTTAAAACTGTCTGCCACTGAATTC  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGTGTTGATCTCTTCCATTTAAAACTGTCTGCCACTGAATTC  699

seq1: chr10_61123000_61124143
seq2: B6Ng01-167D23.g_63_1192

seq1  GAATTCCCTATATAGACCAGACTGGCCTCTACCTTACAGCATCTGCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATATAGACCAGACTGGCCTCTACCTTACAGCATCTGCCTGC  50

seq1  CTCTGCCTCCTGATGGATGGCTGGGATTAATTATGGTCGTTCACCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTGATGGATGGCTGGGATTAATTATGGTCGTTCACCACCAT  100

seq1  GCCTAGCTTCCTTAGGTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTTCCTTAGGTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT  150

seq1  GTTTTAACAGTGACCACACTTGCATTTGCTACACTCTCAGATGTTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACAGTGACCACACTTGCATTTGCTACACTCTCAGATGTTTGAAT  200

seq1  AACTTTAACTAGAAAGGAAAACTGACGTTGGATAATAATTATTTTGTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACTAGAAAGGAAAACTGACGTTGGATAATAATTATTTTGTACG  250

seq1  TTTCCTAAGGCTCTTATTGTTGTTTTTAATTGCAGTTATTTGTTTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAGGCTCTTATTGTTGTTTTTAATTGCAGTTATTTGTTTAATAA  300

seq1  TTTATATGCGTGTGGCTGTTGGTGGCGGGCAGAGGTCAGCTTGCAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCGTGTGGCTGTTGGTGGCGGGCAGAGGTCAGCTTGCAGGCCA  350

seq1  TCTGGGGATGAAGCCCAGCAGTGCTGCTCTGTGGCCATCTTGCCAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATGAAGCCCAGCAGTGCTGCTCTGTGGCCATCTTGCCAGCACA  400

seq1  GTGCCCTTCCTCGGGGATGCTGGTGTTTGGTCCAGCTCGTCTTACTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTCCTCGGGGATGCTGGTGTTTGGTCCAGCTCGTCTTACTTCTT  450

seq1  GGTTCCTGGAATTAGTGAATGTTCTTTTTCTCTTCTCTATGTTGTTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGGAATTAGTGAATGTTCTTTTTCTCTTCTCTATGTTGTTGTGC  500

seq1  ATAACAGCTGTCGGAGGAGCTTTTAGTTCAGTTTTCACCATGTCAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCTGTCGGAGGAGCTTTTAGTTCAGTTTTCACCATGTCAGGGAT  550

seq1  GAAACAAATCCTGAAGTTGGAATAACGGAGGGGGGATCATGCCTACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATCCTGAAGTTGGAATAACGGAGGGGGGATCATGCCTACATAA  600

seq1  TTTGTTTTCTTGGATCCTGACTCCAGCAGTGTTGCACACCCATCTGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTTGGATCCTGACTCCAGCAGTGTTGCACACCCATCTGGCAT  650

seq1  TTCATTTCAGATTGCTACAAAGGACCCTTTAAACCCAATCAAGCAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAGATTGCTACAAAGGACCCTTTAAACCCAATCAAGCAAGATG  700

seq1  TGAAAAAGGGGAAGCTCCGCTATGTGGCGAATCTGTTCCCTTATAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGGGGAAGCTCCGCTATGTGGCGAATCTGTTCCCTTATAAAGGG  750

seq1  TATATTTGGAACTACGGCGCCATCCCTCAGGTACGTGTCCAAGAGCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGGAACTACGGCGCCATCCCTCAGGTACGTGTCCAAGAGCCTCC  800

seq1  TTACTCGCTAAAAATGTAC-TTTTTTTTTCTTTTAGCTTAGTAAAAATTA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTACTCGCTAAAAATGTACTTTTTTTTTTCTTTTAGCTTAGTAAAAATTA  850

seq1  ACTCACTTTTGATCAAACGTTTAAATGCAGAAAATACTGGCTATCACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTTGATCAAACGTTTAAATGCAGAAAATACTGGCTATCACAGA  900

seq1  GCAGAAAAGCACTGGATGGGATAATTTTATTTTAAACATTTTAATGACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGCACTGGATGGGATAATTTTATTTTAAACATTTTAATGACTT  950

seq1  ATTTCCAAGGTTAACTAGAAGGAATATGTCTATGTTTAAGCTCAGATTTT  999
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATTTCCAAGG-TAACTAGAAGGGATATGTCTATGTTTAAGCTCAGATTTT  999

seq1  CTAAAATGTTCCGTTTTCTATGGACTCATTTTAGACTCCCGACTGTACAT  1049
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CTAAAATGTTCCGTTTTCTATGGACTCA-TTTAGACTCCCGACTG-ACAT  1047

seq1  TCTTCACAGACTTAGTATTGTGTAGTGAGAAGAGGGAGCCTTGGTACTTA  1099
      |  |||||||| |||||||| ||||||| ||||| |   |||||||||  
seq2  TTCTCACAGAC-TAGTATTG-GTAGTGA-AAGAGAG---CTTGGTACT--  1089

seq1  AAGCCTTGGTTCTTAGCCAAGCTTAGGGGCACACTCCT-GTTAGCC  1144
      ||||||  | |||||||| |||||| ||||||| |||| |||||||
seq2  AAGCCT--GGTCTTAGCC-AGCTTA-GGGCACA-TCCTGGTTAGCC  1130