BAC Information

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BAC

Clone NameB6Ng01-167F16
Chromosome10 (Build37)
Map Location 53,169,847 - 53,340,663
singlet/doubletdoublet
Overlap geneEG432460, Mcm9, Asf1a, LOC100042554
Upstream geneEG629689, Zfa, Slc35f1, Pln
Downstream gene4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167F16.bB6Ng01-167F16.g
ACCDH958876DH958877
length1,108346
definitionDH958876|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F16, 5' end.DH958877|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,169,847 - 53,171,001)(53,340,324 - 53,340,663)
sequence
gaattcattctgcaatttgattaatgacagccgagataaaattaagtatt
ctcatacaaaaaagggagacatatgtagtttaggacaaagaaaaatataa
gaccttccttatatacctagtctttaaaatcttatacaatatcaggccag
ctgagcatttctactttaaaaatattctttggaagatgattctattattc
ctcctacctttatcaagatagccagaatgtcttgcctggactactttgcc
agcttctaaacaattcactttgctctgccacttctatctctttgttcggt
ttccatcacagcaggcttttctttttgaccagagaaatcatataacccct
cctttgctcaaatgaatgtttcattcacactatatgggaataaagtccca
agctgtagaagaggctccaaggtctccgtgccctactgatgtgttctacc
tcacatgctactccaacaccaccaccactctgaactccatgctattcttt
gaatttcctgagtaatttcctacatgaaaccaggcagtgggggcacatgc
ctttaatctcagcatttgggaggcagaggcaggtggatctctgagtttga
ggccagcatggtctacaaagtgagttccaggacagccatggctacacaga
gaaaccctgtcttggaaaaaaaaaaacaatcaatcaaacaaacaaacaaa
caaaaaaattaaaaacaaaaacaaaaaaaggctgggcatggtggcgcatg
cctttaatcccagcaatcgggaggcagaggcaggtggatttctgagttcg
aggccagcctggtctacagagtgagttccaggacagccagggctacagaa
aaactctgtctcgaaaacccaaaaaagagagaagagagagagatgatgag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagaaagaaacaaagaagaatgtttttaaaaattactacatgaagcc
ttgcagccactgttccctctgctaaatggatgtcaccagctaattctgca
aatatctcagttgtcataaataaaaatataagtcatttaatagaatggga
gcctcagt
gaattcttggtttgtagttttatttgtgtgtatgtgcatgtataagaatc
tctgtgtatggatgcccagaggtcagagggtggcgggtcaggtggagctg
gaatagcaggtggtgtgaaactggtcatctggaagttcaggaagagctta
taactgctgagacatctctctagtgcctagtattagtgaatattcattca
tattctctctctccctctctctctctctcttcctctttctctctctttct
ctctctctctctctccctccctccctccctccctccctctctctctttct
ttctctctttctctccttctttctttctttctttctctccttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53169847_53171001
seq2: B6Ng01-167F16.b_48_1155

seq1  GAATTCATTCTGCAATTTGATTAATGACAGCCGAGATAAAATTAAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGCAATTTGATTAATGACAGCCGAGATAAAATTAAGTATT  50

seq1  CTCATACAAAAAAGGGAGACATATGTAGTTTAGGACAAAGAAAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAAAAAAGGGAGACATATGTAGTTTAGGACAAAGAAAAATATAA  100

seq1  GACCTTCCTTATATACCTAGTCTTTAAAATCTTATACAATATCAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCTTATATACCTAGTCTTTAAAATCTTATACAATATCAGGCCAG  150

seq1  CTGAGCATTTCTACTTTAAAAATATTCTTTGGAAGATGATTCTATTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATTTCTACTTTAAAAATATTCTTTGGAAGATGATTCTATTATTC  200

seq1  CTCCTACCTTTATCAAGATAGCCAGAATGTCTTGCCTGGACTACTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCTTTATCAAGATAGCCAGAATGTCTTGCCTGGACTACTTTGCC  250

seq1  AGCTTCTAAACAATTCACTTTGCTCTGCCACTTCTATCTCTTTGTTCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAAACAATTCACTTTGCTCTGCCACTTCTATCTCTTTGTTCGGT  300

seq1  TTCCATCACAGCAGGCTTTTCTTTTTGACCAGAGAAATCATATAACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACAGCAGGCTTTTCTTTTTGACCAGAGAAATCATATAACCCCT  350

seq1  CCTTTGCTCAAATGAATGTTTCATTCACACTATATGGGAATAAAGTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCAAATGAATGTTTCATTCACACTATATGGGAATAAAGTCCCA  400

seq1  AGCTGTAGAAGAGGCTCCAAGGTCTCCGTGCCCTACTGATGTGTTCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGAAGAGGCTCCAAGGTCTCCGTGCCCTACTGATGTGTTCTACC  450

seq1  TCACATGCTACTCCAACACCACCACCACTCTGAACTCCATGCTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCTACTCCAACACCACCACCACTCTGAACTCCATGCTATTCTTT  500

seq1  GAATTTCCTGAGTAATTTCCTACATGAAACCAGGCAGTGGGGGCACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTGAGTAATTTCCTACATGAAACCAGGCAGTGGGGGCACATGC  550

seq1  CTTTAATCTCAGCATTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTCAGCATTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGA  600

seq1  GGCCAGCATGGTCTACAAAGTGAGTTCCAGGACAGCCATGGCTACACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATGGTCTACAAAGTGAGTTCCAGGACAGCCATGGCTACACAGA  650

seq1  GAAACCCTGTCTTGGAAAAAAAAAAACAATCAATCAAACAAACAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTTGGAAAAAAAAAAACAATCAATCAAACAAACAAACAAA  700

seq1  CAAAAAAATTAAAAACAAAAACAAAAAAAGGCTGGGCATGGTGGCGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATTAAAAACAAAAACAAAAAAAGGCTGGGCATGGTGGCGCATG  750

seq1  CCTTTAATCCCAGCAATCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCAATCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCG  800

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAA  850

seq1  AAACCCTGTCTCGAAAAACCAAAAAAAAGAAGAAGAAGAAGAAGAAGAAG  900
      |||| |||||||||||| |||||||| ||                     
seq2  AAACTCTGTCTCGAAAACCCAAAAAAGAG---------------------  879

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAA  950
          ||||| |||   ||| || ||  ||||   |||   |||   ||| 
seq2  ----AGAAG-AGAGAGAGATGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  924

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAAAGAAAAC  1000
        |||   |||   |||   |||  ||| |||  |||||  ||||||   
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAG-AGAGAAAGAAACAAAGAA---  970

seq1  AAAAAGAAAGAAATGTTTTTTTAAAAAATTTACTACATGAAGCCTTTGCA  1050
                 |||||||||    |||| ||||||||||||||| |||||
seq2  ----------GAATGTTTTT----AAAAATTACTACATGAAGCC-TTGCA  1005

seq1  GCCACTGTTCCCTCTGCTTAAATGGATGTCAACCAGCTTATTCTGCAAAT  1100
      ||||||||||||||||| |||||||||||| ||||||| |||||||||| 
seq2  GCCACTGTTCCCTCTGC-TAAATGGATGTC-ACCAGCTAATTCTGCAAA-  1052

seq1  TATCTCAGTTGTCATAA--TAAAATAT-AGTCATTTAATTTAAGAAT-GG  1146
      |||||||||||||||||   ||||||| |||||||||||   ||||| ||
seq2  TATCTCAGTTGTCATAAATAAAAATATAAGTCATTTAAT---AGAATGGG  1099

seq1  AGCCTCAGT  1155
      |||||||||
seq2  AGCCTCAGT  1108

seq1: chr10_53340324_53340663
seq2: B6Ng01-167F16.g_70_378 (reverse)

seq1  AAGAGAGAAAGACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAG  50
                                ||||||| ||| |||||||     
seq2  -------------------------AAGAGAGAAAGAAAGAGAGA-----  20

seq1  GGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAAAGAGAG  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAAAGAGAG  69

seq1  AGAAAGAGGAAGAGAGAGAGAGAGAGGGAGAGAGAGAATATGAATGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAAGAGAGAGAGAGAGAGGGAGAGAGAGAATATGAATGAATA  119

seq1  TTCACTAATACTAGGCACTAGAGAGATGTCTCAGCAGTTATAAGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATACTAGGCACTAGAGAGATGTCTCAGCAGTTATAAGCTCTTC  169

seq1  CTGAACTTCCAGATGACCAGTTTCACACCACCTGCTATTCCAGCTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCCAGATGACCAGTTTCACACCACCTGCTATTCCAGCTCCACC  219

seq1  TGACCCGCCACCCTCTGACCTCTGGGCATCCATACACAGAGATTCTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCGCCACCCTCTGACCTCTGGGCATCCATACACAGAGATTCTTATA  269

seq1  CATGCACATACACACAAATAAAACTACAAACCAAGAATTC  340
      ||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACATACACACAAATAAAACTACAAACCAAGAATTC  309